MD15G1363900.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0003160
Physical Location & Seq
Reverse (-)
44118218 .. 44119900
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1363900.v1.1.491

Sequence Viewer

Length: 483 bp
ATGTCGTTGGGGAAGAGACCAAGGCTTCCGATGAAGAGGACCACAAGCATGTCAGAAATCACCTTTGATCCGAACACCATCAGTACTGAGGCACCTCACTCTCAACCGTCCGATCCCAACAACCCTTATCAGCCTCTGGCCTTATGGGGCGGTGGTGGTAGTGGTGGAGGTGATGGTGGTGGGCTTGATGGGTTGGATCAACGGCTCATGATGAAGTTTCCCTCACCATCATCAGCATCGCCAAGAAACCACAGAAAAAATTCTGCTGATTTTGGAGAAACTGCCCACTTCTTGAAGGCTTGTGGTCTCTGTAAACGCCGCCTTATTCCCGGCCGCGATATTTACATGTACAGAGGTGACACAGCTTTCTGCAGTCTAGAGTGCCGGCAGCAACAGATAAACCTTGATGAGAGGAAAGACAAGTGTTCTTCCACCGCCGGACACCAAGTCTCTGCCAAAGGTGAAACCGTGTCTGCCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

161

Amino Acids

17.34

Weight (kDa)

9.08

Isoelectric Point (pI)

59.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 90 - 139 2.8e-26 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccII CGCG 1 cut(s) 336
AciI CCGC 4 cut(s) 150, 319, 334, 435
AclWI GGATC 3 cut(s) 62, 107, 204
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 2 cut(s) 85, 350
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 1 cut(s) 295
AhdI GACNNNNNGTC 1 cut(s) 446
AluBI AGCT 1 cut(s) 365
AluI AGCT 1 cut(s) 365
Alw26I GTCTC 3 cut(s) 10, 311, 454
AlwI GGATC 3 cut(s) 62, 107, 204
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 2 cut(s) 138, 331
ApeKI GCWGC 1 cut(s) 388
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 330
AsuHPI GGTGA 5 cut(s) 52, 182, 216, 368, 473
AvaII GGWCC 1 cut(s) 39
BanI GGYRCC 1 cut(s) 91
BbvI GCAGC 1 cut(s) 400
BccI CCATC 4 cut(s) 86, 167, 182, 235
BceAI ACGGC 1 cut(s) 218
BcnI CCSGG 1 cut(s) 330
BcoDI GTCTC 3 cut(s) 10, 311, 454
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 370
BisI GCNGC 3 cut(s) 319, 334, 389
BlsI GCNGC 3 cut(s) 320, 335, 390
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 39
BmeRI GACNNNNNGTC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 330
BsaI GGTCTC 2 cut(s) 10, 311
BsaJI CCNNGG 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 20
BseMII CTCAG 1 cut(s) 78
BseX3I CGGCCG 1 cut(s) 331
BseXI GCAGC 1 cut(s) 400
Bsh1236I CGCG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 2 cut(s) 140, 333
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 334
BsiSI CCGG 3 cut(s) 330, 385, 438
BsmAI GTCTC 3 cut(s) 10, 311, 454
BsnI GGCC 2 cut(s) 140, 333
Bso31I GGTCTC 2 cut(s) 10, 311
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 3 cut(s) 67, 112, 196
BspACI CCGC 4 cut(s) 150, 319, 334, 435
BspANI GGCC 2 cut(s) 140, 333
BspCNI CTCAG 1 cut(s) 79
BspFNI CGCG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 207
BspLI GGNNCC 1 cut(s) 93
BspMAI CTGCAG 1 cut(s) 374
BspPI GGATC 3 cut(s) 62, 107, 204
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 2 cut(s) 10, 311
BsrFI RCCGGY 1 cut(s) 384
BsrGI TGTACA 1 cut(s) 348
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 67, 112, 196
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 2 cut(s) 108, 469
Bst6I CTCTTC 2 cut(s) 8, 29
BstAUI TGTACA 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 386
BstDEI CTNAG 1 cut(s) 87
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 3 cut(s) 70, 115, 199
BstMAI GTCTC 3 cut(s) 10, 311, 454
BstMBI GATC 3 cut(s) 67, 112, 196
BstMCI CGRYCG 1 cut(s) 334
BstNSI RCATGY 2 cut(s) 52, 349
BstSCI CCNGG 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 370
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 400
BstZI CGGCCG 1 cut(s) 331
BsuRI GGCC 2 cut(s) 140, 333
BtgZI GCGATG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 386
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 207
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 84, 349
CviAII CATG 3 cut(s) 49, 208, 346
CviJI RGCY 8 cut(s) 25, 133, 140, 184, 205, 299, 333, 365
CviKI_1 RGCY 8 cut(s) 25, 133, 140, 184, 205, 299, 333, 365
CviQI GTAC 2 cut(s) 84, 349
DdeI CTNAG 1 cut(s) 87
DpnI GATC 3 cut(s) 69, 114, 198
DpnII GATC 3 cut(s) 67, 112, 196
DriI GACNNNNNGTC 1 cut(s) 446
EaeI YGGCCR 1 cut(s) 331
EagI CGGCCG 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 8, 29
Eam1105I GACNNNNNGTC 1 cut(s) 446
EarI CTCTTC 2 cut(s) 8, 29
EclXI CGGCCG 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 20
Eco31I GGTCTC 2 cut(s) 10, 311
Eco47I GGWCC 1 cut(s) 39
Eco52I CGGCCG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 52, 211, 349
FaiI YATR 4 cut(s) 50, 145, 209, 347
FatI CATG 3 cut(s) 48, 207, 345
Fnu4HI GCNGC 3 cut(s) 319, 334, 389
Fsp4HI GCNGC 3 cut(s) 319, 334, 389
FspBI CTAG 1 cut(s) 377
GluI GCNGC 3 cut(s) 319, 334, 389
HaeIII GGCC 2 cut(s) 140, 333
HapII CCGG 3 cut(s) 330, 385, 438
Hin1II CATG 3 cut(s) 52, 211, 349
HpaII CCGG 3 cut(s) 330, 385, 438
HphI GGTGA 5 cut(s) 52, 182, 216, 368, 473
Hpy166II GTNNAC 1 cut(s) 314
Hpy188I TCNGA 4 cut(s) 30, 55, 72, 112
Hpy188III TCNNGA 3 cut(s) 208, 292, 377
Hpy8I GTNNAC 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 2 cut(s) 108, 469
HpyCH4V TGCA 1 cut(s) 372
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 3 cut(s) 52, 211, 349
KroI GCCGGC 1 cut(s) 384
KroNI GCCGGC 1 cut(s) 386
Kzo9I GATC 3 cut(s) 67, 112, 196
LpnPI CCDG 4 cut(s) 122, 343, 398, 451
Lsp1109I GCAGC 1 cut(s) 400
LweI GCATC 1 cut(s) 245
MaeI CTAG 1 cut(s) 377
MaeIII GTNAC 1 cut(s) 356
MalI GATC 3 cut(s) 69, 114, 198
MboI GATC 3 cut(s) 67, 112, 196
MboII GAAGA 3 cut(s) 25, 46, 420
MluCI AATT 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 8 cut(s) 30, 82, 105, 144, 161, 232, 347, 405
MroNI GCCGGC 1 cut(s) 384
MroXI GAANNNNTTC 1 cut(s) 259
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 3 cut(s) 330, 385, 438
MspR9I CCNGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 336
NaeI GCCGGC 1 cut(s) 386
NciI CCSGG 1 cut(s) 330
NdeII GATC 3 cut(s) 67, 112, 196
NgoMIV GCCGGC 1 cut(s) 384
NlaIII CATG 3 cut(s) 52, 211, 349
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 356
NspI RCATGY 2 cut(s) 52, 349
PagI TCATGA 1 cut(s) 207
PciI ACATGT 1 cut(s) 345
PdiI GCCGGC 1 cut(s) 386
PdmI GAANNNNTTC 1 cut(s) 259
PkrI GCNGC 3 cut(s) 320, 335, 390
PscI ACATGT 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 39
PstI CTGCAG 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 85, 350
RsaNI GTAC 2 cut(s) 84, 349
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 3 cut(s) 319, 334, 389
Sau3AI GATC 3 cut(s) 67, 112, 196
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 330
SetI ASST 7 cut(s) 65, 97, 172, 358, 367, 405, 463
SfaNI GCATC 1 cut(s) 245
SfcI CTRYAG 1 cut(s) 370
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 259
SsiI CCGC 4 cut(s) 150, 319, 334, 435
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 2 cut(s) 108, 469
TasI AATT 1 cut(s) 259
TatI WGTACW 2 cut(s) 83, 348
TauI GCSGC 2 cut(s) 321, 336
TseFI GTSAC 1 cut(s) 356
TseI GCWGC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 47, 227
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 259
XbaI TCTAGA 1 cut(s) 376
XceI RCATGY 2 cut(s) 52, 349
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 1 cut(s) 377
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.