Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003160

Physical Location & Seq

Genomic Coordinates Reverse (-)

42170370 .. 42172059

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G512200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGTTGTTGGGGAAGAGACCAAGGCCTCCAATGAAGAGGACCACAAGCATGTCAGAGATCACCTTTGATCTGAACACCATCAGTACTGAGGCAGCTCAATCTCAACCGTCCGATCCTAACAACCCTTTTAACCCTTTGGCTTTCTGGGGTGGTGGCGGTGGTGGAGGTGGGCTTGATGGGTTGGATCAAAGGCTCATGATGAAGATGGCCTCACCATCACCATCATCACCATCACCAGGAAGCCACAGAAGGAACTCGGCTGATTTTGTAGAGACTGCCCACTTCTTGAGGGCTTGTGGGCTCTGCAAACGCCGCCTTGTTCCTGGCCGTGATATTTACATGTACAGAGGTGACACTGCTTTCTGCAGCCTAGAGTGCCGGCAGCAACAGATGAACCTTGACGAGAGGAATGACAAGTGTTCTTCCACCGCCGGACGCCAAGTCTCCACCAAAGGCGAAACCGTCGCCGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

159

Amino Acids

17.19

Weight (kDa)

9.16

Isoelectric Point (pI)

76.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22160 AT1G78020
fragaria_vesca	FvH4_1g21440 FvH4_5g37970 FvH4_5g37970
malus_domestica	MD00G1073400.v1.1 MD01G1025300.v1.1 MD08G1178500.v1.1 MD15G1363900.v1.1
prunus_persica	Prupe.1G512200_v2.0.a1 Prupe.6G180700_v2.0.a1
pyrus_communis	pycom01g05330 pycom08g15280 pycom15g29830 pycom15g32690
rosa_chinensis	RchiOBHm_Chr2g0115261 RchiOBHm_Chr7g0239911
rosa_laevigata	RLG00000000719 RLG00000018170
rosa_multiflora	Rmu_co8373487.1_g000001 Rmu_sc0000540.1_g000047 Rmu_sc0001626.1_g000049 Rmu_sc0002784.1_g000062
rosa_roxburghii	Rroxscaffold_2G00130800 Rroxscaffold_3G00220690
rosa_rugosa	Rorug02G0195400 Rorug07G0331100
rosa_samantha	Rh2AG253300 Rh2BG263500 Rh2CG258200 Rh2DG261500 Rh7AG484500 Rh7BG457700 Rh7CG502000 Rh7DG470200
rosa_wichuraiana	Rw2G019800 Rw7G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	156, 313, 429, 468
AclWI	GGATC	2 cut(s)	107, 192
AcoI	YGGCCR	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	2 cut(s)	85, 344
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	339
AhdI	GACNNNNNGTC	1 cut(s)	440
AjnI	CCWGG	2 cut(s)	235, 322
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	3 cut(s)	10, 266, 448
AlwI	GGATC	2 cut(s)	107, 192
AoxI	GGCC	3 cut(s)	23, 207, 325
ApeKI	GCWGC	3 cut(s)	92, 366, 382
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	6 cut(s)	52, 204, 210, 219, 225, 362
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	104, 378, 394
BccI	CCATC	6 cut(s)	86, 170, 199, 223, 229, 238
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	237, 324
BcoDI	GTCTC	3 cut(s)	10, 266, 448
BfaI	CTAG	1 cut(s)	371
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	5 cut(s)	93, 313, 367, 383, 468
BlsI	GCNGC	5 cut(s)	94, 314, 368, 384, 469
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	237, 324
Bme18I	GGWCC	1 cut(s)	39
BmeRI	GACNNNNNGTC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	237, 324
BpuEI	CTTGAG	1 cut(s)	307
BsaHI	GRCGYC	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse118I	RCCGGY	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	237, 324
BseDI	CCNNGG	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	3 cut(s)	104, 378, 394
BshFI	GGCC	3 cut(s)	25, 209, 327
BsiSI	CCGG	2 cut(s)	379, 432
BslI	CCNNNNNNNGG	1 cut(s)	236
BsmAI	GTCTC	3 cut(s)	10, 266, 448
BsnI	GGCC	3 cut(s)	25, 209, 327
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	57, 67, 112, 184
BspACI	CCGC	4 cut(s)	156, 313, 429, 468
BspANI	GGCC	3 cut(s)	25, 209, 327
BspCNI	CTCAG	1 cut(s)	79
BspHI	TCATGA	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	368
BspPI	GGATC	2 cut(s)	107, 192
BspTNI	GGTCTC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	378
BsrGI	TGTACA	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	4 cut(s)	57, 67, 112, 184
BssNI	GRCGYC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	2 cut(s)	237, 324
Bst4CI	ACNGT	2 cut(s)	108, 463
Bst6I	CTCTTC	2 cut(s)	8, 29
BstACI	GRCGYC	1 cut(s)	436
BstAUI	TGTACA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	60, 70, 115, 187
BstMAI	GTCTC	3 cut(s)	10, 266, 448
BstMBI	GATC	4 cut(s)	57, 67, 112, 184
BstMWI	GCNNNNNNNGC	2 cut(s)	312, 375
BstNI	CCWGG	2 cut(s)	237, 324
BstNSI	RCATGY	2 cut(s)	52, 343
BstSCI	CCNGG	2 cut(s)	235, 322
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	3 cut(s)	104, 378, 394
BsuRI	GGCC	3 cut(s)	25, 209, 327
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	380
CciI	TCATGA	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	39
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	84, 343
CviAII	CATG	3 cut(s)	49, 196, 340
CviQI	GTAC	2 cut(s)	84, 343
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	4 cut(s)	59, 69, 114, 186
DpnII	GATC	4 cut(s)	57, 67, 112, 184
DriI	GACNNNNNGTC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	325
Eam1104I	CTCTTC	2 cut(s)	8, 29
Eam1105I	GACNNNNNGTC	1 cut(s)	440
EarI	CTCTTC	2 cut(s)	8, 29
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	25
Eco24I	GRGCYC	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	235, 322
EcoT14I	CCWWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	3 cut(s)	52, 199, 343
FaiI	YATR	3 cut(s)	50, 197, 341
FatI	CATG	3 cut(s)	48, 195, 339
Fnu4HI	GCNGC	5 cut(s)	93, 313, 367, 383, 468
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	5 cut(s)	93, 313, 367, 383, 468
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	5 cut(s)	93, 313, 367, 383, 468
HaeIII	GGCC	3 cut(s)	25, 209, 327
HapII	CCGG	2 cut(s)	379, 432
HgaI	GACGC	1 cut(s)	444
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	3 cut(s)	52, 199, 343
HpaII	CCGG	2 cut(s)	379, 432
HphI	GGTGA	6 cut(s)	52, 204, 210, 219, 225, 362
Hpy188I	TCNGA	3 cut(s)	55, 72, 112
Hpy188III	TCNNGA	2 cut(s)	196, 286
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	108, 463
HpyCH4V	TGCA	2 cut(s)	306, 366
HpyF10VI	GCNNNNNNNGC	2 cut(s)	312, 375
HpyF3I	CTNAG	1 cut(s)	87
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	3 cut(s)	52, 199, 343
KroI	GCCGGC	1 cut(s)	378
KroNI	GCCGGC	1 cut(s)	380
Kzo9I	GATC	4 cut(s)	57, 67, 112, 184
LpnPI	CCDG	7 cut(s)	130, 222, 249, 309, 336, 392, 445
Lsp1109I	GCAGC	3 cut(s)	104, 378, 394
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	4 cut(s)	59, 69, 114, 186
MboI	GATC	4 cut(s)	57, 67, 112, 184
MboII	GAAGA	4 cut(s)	25, 46, 214, 414
MhlI	GDGCHC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	8 cut(s)	30, 36, 82, 158, 220, 282, 341, 399
MroNI	GCCGGC	1 cut(s)	378
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	47
MspI	CCGG	2 cut(s)	379, 432
MspR9I	CCNGG	2 cut(s)	237, 324
MvaI	CCWGG	2 cut(s)	237, 324
MwoI	GCNNNNNNNGC	2 cut(s)	312, 375
NaeI	GCCGGC	1 cut(s)	380
NdeII	GATC	4 cut(s)	57, 67, 112, 184
NgoMIV	GCCGGC	1 cut(s)	378
NlaIII	CATG	3 cut(s)	52, 199, 343
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	2 cut(s)	52, 343
PagI	TCATGA	1 cut(s)	195
PceI	AGGCCT	1 cut(s)	25
PciI	ACATGT	1 cut(s)	339
PdiI	GCCGGC	1 cut(s)	380
PkrI	GCNGC	5 cut(s)	94, 314, 368, 384, 469
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	235, 322
PspGI	CCWGG	2 cut(s)	235, 322
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	85, 344
RsaNI	GTAC	2 cut(s)	84, 343
RseI	CAYNNNNRTG	1 cut(s)	47
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	5 cut(s)	93, 313, 367, 383, 468
Sau3AI	GATC	4 cut(s)	57, 67, 112, 184
Sau96I	GGNCC	1 cut(s)	39
ScaI	AGTACT	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	237, 324
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	65, 97, 169, 352, 399
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	286
SmoI	CTYRAG	1 cut(s)	286
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	4 cut(s)	156, 313, 429, 468
SspMI	CTAG	1 cut(s)	371
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	2 cut(s)	235, 322
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	108, 463
TatI	WGTACW	2 cut(s)	83, 342
TauI	GCSGC	2 cut(s)	315, 470
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	3 cut(s)	92, 366, 382
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	47, 215, 407
TspRI	CASTG	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	39
XceI	RCATGY	2 cut(s)	52, 343
XspI	CTAG	1 cut(s)	371
ZrmI	AGTACT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.