Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002784.1

Orthogroup ID

OG0003160

Physical Location & Seq

Genomic Coordinates Forward (+)

276932 .. 278057

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002784.1_g000062.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atgttgttagggaagcgtcctcgcccaccgattcggagaacgacaagcatgaccgggatcaccgtcgatctgaacaacgtggaagaccaggagccgactgaaaaccctagcatgatggatgtgcatgcatcatcgacggtggtgggccctgatgggcctgttaattataatcagagccctaacagcttggggtatcatgaacagcaccgtttcttggccatgttgtcacccagaaccaacagcagcaaccacagaagaaactcggcctccgacctagtcgaaaccgctcacttcctccgcacgtgcggcctctgcaaacggagcttggcttccggccgcgacctctatatgtataggggagatacagctttttgcagcctggaatgcagagagcagcagatgaagcaagacgagagagtagagaagtgtaagggggtggcctcgaagaaagaggaccgccatgcaactcgaccgagttccaaggcctctggtaaaacccagactgtggccgctgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

172

Amino Acids

19.12

Weight (kDa)

9.22

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22160 AT1G78020
fragaria_vesca	FvH4_1g21440 FvH4_5g37970 FvH4_5g37970
malus_domestica	MD00G1073400.v1.1 MD01G1025300.v1.1 MD08G1178500.v1.1 MD15G1363900.v1.1
prunus_persica	Prupe.1G512200_v2.0.a1 Prupe.6G180700_v2.0.a1
pyrus_communis	pycom01g05330 pycom08g15280 pycom15g29830 pycom15g32690
rosa_chinensis	RchiOBHm_Chr2g0115261 RchiOBHm_Chr7g0239911
rosa_laevigata	RLG00000000719 RLG00000018170
rosa_multiflora	Rmu_co8373487.1_g000001 Rmu_sc0000540.1_g000047 Rmu_sc0001626.1_g000049 Rmu_sc0002784.1_g000062
rosa_roxburghii	Rroxscaffold_2G00130800 Rroxscaffold_3G00220690
rosa_rugosa	Rorug02G0195400 Rorug07G0331100
rosa_samantha	Rh2AG253300 Rh2BG263500 Rh2CG258200 Rh2DG261500 Rh7AG484500 Rh7BG457700 Rh7CG502000 Rh7DG470200
rosa_wichuraiana	Rw2G019800 Rw7G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccBSI	CCGCTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	339
AciI	CCGC	6 cut(s)	285, 298, 306, 337, 457, 510
AclWI	GGATC	1 cut(s)	65
AcoI	YGGCCR	3 cut(s)	216, 334, 507
AcvI	CACGTG	1 cut(s)	303
AfiI	CCNNNNNNNGG	2 cut(s)	214, 505
AjnI	CCWGG	2 cut(s)	87, 378
AluBI	AGCT	3 cut(s)	186, 324, 368
AluI	AGCT	3 cut(s)	186, 324, 368
AlwI	GGATC	1 cut(s)	65
AoxI	GGCC	9 cut(s)	145, 155, 216, 264, 307, 334, 438, 483, 507
ApaI	GGGCCC	1 cut(s)	149
ApeKI	GCWGC	4 cut(s)	243, 375, 394, 512
AspS9I	GGNCC	4 cut(s)	145, 146, 155, 454
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	52, 219
AvaII	GGWCC	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	149
BalI	TGGCCA	1 cut(s)	218
BanII	GRGCYC	2 cut(s)	149, 179
BbrPI	CACGTG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	90
BbvI	GCAGC	4 cut(s)	255, 387, 406, 499
BccI	CCATC	2 cut(s)	109, 146
BciT130I	CCWGG	2 cut(s)	89, 380
BcnI	CCSGG	1 cut(s)	55
BfaI	CTAG	2 cut(s)	108, 275
BisI	GCNGC	7 cut(s)	244, 307, 337, 376, 395, 510, 513
BlsI	GCNGC	7 cut(s)	245, 308, 338, 377, 396, 511, 514
Bme1390I	CCNGG	3 cut(s)	55, 89, 380
Bme18I	GGWCC	1 cut(s)	454
BmgT120I	GGNCC	4 cut(s)	145, 146, 155, 454
BmiI	GGNNCC	2 cut(s)	93, 147
BmrFI	CCNGG	3 cut(s)	55, 89, 380
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	480
BsaXI	ACNNNNNCTCC	2 cut(s)	251, 281
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 505
BseBI	CCWGG	2 cut(s)	89, 380
BseDI	CCNNGG	1 cut(s)	480
BseGI	GGATG	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	214, 505
BseSI	GKGCMC	1 cut(s)	149
BseX3I	CGGCCG	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	255, 387, 406, 499
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	2 cut(s)	337, 473
BshFI	GGCC	9 cut(s)	147, 157, 218, 266, 309, 336, 440, 485, 509
BsiEI	CGRYCG	2 cut(s)	337, 473
BsiSI	CCGG	2 cut(s)	54, 333
BslI	CCNNNNNNNGG	2 cut(s)	214, 505
BsmI	GAATGC	1 cut(s)	389
BsnI	GGCC	9 cut(s)	147, 157, 218, 266, 309, 336, 440, 485, 509
Bsp120I	GGGCCC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	149, 179
Bsp143I	GATC	2 cut(s)	57, 67
BspACI	CCGC	6 cut(s)	285, 298, 306, 337, 457, 510
BspANI	GGCC	9 cut(s)	147, 157, 218, 266, 309, 336, 440, 485, 509
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	93, 147
BspPI	GGATC	1 cut(s)	65
BsrBI	CCGCTC	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	2 cut(s)	57, 67
BssT1I	CCWWGG	1 cut(s)	480
Bst2UI	CCWGG	2 cut(s)	89, 380
Bst4CI	ACNGT	4 cut(s)	64, 139, 209, 505
BstBAI	YACGTR	1 cut(s)	303
BstC8I	GCNNGC	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	124
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	2 cut(s)	60, 70
BstMBI	GATC	2 cut(s)	57, 67
BstMCI	CGRYCG	2 cut(s)	337, 473
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 306, 312, 321, 384, 403
BstNI	CCWGG	2 cut(s)	89, 380
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	53, 87, 378
BstSLI	GKGCMC	1 cut(s)	149
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	4 cut(s)	255, 387, 406, 499
BstV2I	GAAGAC	1 cut(s)	90
BstZI	CGGCCG	1 cut(s)	334
BsuRI	GGCC	9 cut(s)	147, 157, 218, 266, 309, 336, 440, 485, 509
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	126
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	4 cut(s)	145, 146, 155, 454
CseI	GACGC	1 cut(s)	5
CviAII	CATG	6 cut(s)	49, 112, 125, 197, 220, 461
DpnI	GATC	2 cut(s)	59, 69
DpnII	GATC	2 cut(s)	57, 67
EaeI	YGGCCR	3 cut(s)	216, 334, 507
EagI	CGGCCG	1 cut(s)	334
EclXI	CGGCCG	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	485
Eco24I	GRGCYC	2 cut(s)	149, 179
Eco47I	GGWCC	1 cut(s)	454
Eco52I	CGGCCG	1 cut(s)	334
Eco72I	CACGTG	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	87, 378
EcoT14I	CCWWGG	1 cut(s)	480
EcoT22I	ATGCAT	1 cut(s)	130
EcoT38I	GRGCYC	2 cut(s)	149, 179
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	6 cut(s)	52, 115, 128, 200, 223, 464
FatI	CATG	6 cut(s)	48, 111, 124, 196, 219, 460
Fnu4HI	GCNGC	7 cut(s)	244, 307, 337, 376, 395, 510, 513
FokI	GGATG	1 cut(s)	131
FriOI	GRGCYC	2 cut(s)	149, 179
Fsp4HI	GCNGC	7 cut(s)	244, 307, 337, 376, 395, 510, 513
FspBI	CTAG	2 cut(s)	108, 275
GluI	GCNGC	7 cut(s)	244, 307, 337, 376, 395, 510, 513
HaeIII	GGCC	9 cut(s)	147, 157, 218, 266, 309, 336, 440, 485, 509
HapII	CCGG	2 cut(s)	54, 333
HgaI	GACGC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	52, 115, 128, 200, 223, 464
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	54, 333
HphI	GGTGA	2 cut(s)	52, 219
Hpy188I	TCNGA	4 cut(s)	36, 72, 174, 271
Hpy188III	TCNNGA	1 cut(s)	197
Hpy99I	CGWCG	2 cut(s)	68, 139
HpyCH4III	ACNGT	4 cut(s)	64, 139, 209, 505
HpyCH4IV	ACGT	2 cut(s)	78, 302
HpyCH4V	TGCA	6 cut(s)	124, 128, 315, 375, 387, 464
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 306, 312, 321, 384, 403
HpySE526I	ACGT	2 cut(s)	78, 302
Hsp92II	CATG	6 cut(s)	52, 115, 128, 200, 223, 464
Kzo9I	GATC	2 cut(s)	57, 67
LmnI	GCTCC	2 cut(s)	91, 321
Lsp1109I	GCAGC	4 cut(s)	255, 387, 406, 499
LweI	GCATC	1 cut(s)	137
MaeI	CTAG	2 cut(s)	108, 275
MaeII	ACGT	2 cut(s)	78, 302
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	2 cut(s)	59, 69
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	2 cut(s)	57, 67
MboII	GAAGA	3 cut(s)	95, 267, 457
MhlI	GDGCHC	2 cut(s)	149, 179
MlsI	TGGCCA	1 cut(s)	218
MluCI	AATT	1 cut(s)	163
MluNI	TGGCCA	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	8 cut(s)	30, 277, 305, 320, 353, 445, 451, 496
Mox20I	TGGCCA	1 cut(s)	218
Mph1103I	ATGCAT	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	218
MseI	TTAA	2 cut(s)	162, 517
Msp20I	TGGCCA	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	512
MspI	CCGG	2 cut(s)	54, 333
MspR9I	CCNGG	3 cut(s)	55, 89, 380
Mva1269I	GAATGC	1 cut(s)	389
MvaI	CCWGG	2 cut(s)	89, 380
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	6 cut(s)	183, 306, 312, 321, 384, 403
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	2 cut(s)	57, 67
NlaIII	CATG	6 cut(s)	52, 115, 128, 200, 223, 464
NlaIV	GGNNCC	2 cut(s)	93, 147
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	225
NsiI	ATGCAT	1 cut(s)	130
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	485
PctI	GAATGC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	275
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	7 cut(s)	245, 308, 338, 377, 396, 511, 514
PmaCI	CACGTG	1 cut(s)	303
PmlI	CACGTG	1 cut(s)	303
Ppu21I	YACGTR	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	87, 378
PspCI	CACGTG	1 cut(s)	303
PspGI	CCWGG	2 cut(s)	87, 378
PspN4I	GGNNCC	2 cut(s)	93, 147
PspOMI	GGGCCC	1 cut(s)	145
PspPI	GGNCC	4 cut(s)	145, 146, 155, 454
PsyI	GACNNNGTC	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	162, 517
SatI	GCNGC	7 cut(s)	244, 307, 337, 376, 395, 510, 513
Sau3AI	GATC	2 cut(s)	57, 67
Sau96I	GGNCC	4 cut(s)	145, 146, 155, 454
ScrFI	CCNGG	3 cut(s)	55, 89, 380
SduI	GDGCHC	2 cut(s)	149, 179
SetI	ASST	7 cut(s)	81, 188, 276, 305, 326, 345, 370
SfaNI	GCATC	1 cut(s)	137
SinI	GGWCC	1 cut(s)	454
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	1 cut(s)	163
SseBI	AGGCCT	1 cut(s)	485
SsiI	CCGC	6 cut(s)	285, 298, 306, 337, 457, 510
SspMI	CTAG	2 cut(s)	108, 275
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	3 cut(s)	53, 87, 378
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	4 cut(s)	64, 139, 209, 505
TaiI	ACGT	2 cut(s)	81, 305
TaqI	TCGA	5 cut(s)	66, 134, 279, 443, 469
TaqII	GACCGA	1 cut(s)	487
TasI	AATT	1 cut(s)	163
TauI	GCSGC	3 cut(s)	309, 339, 512
TfiI	GAWTC	1 cut(s)	31
Tru1I	TTAA	2 cut(s)	162, 517
Tru9I	TTAA	2 cut(s)	162, 517
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	4 cut(s)	243, 375, 394, 512
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	2 cut(s)	213, 416
TspGWI	ACGGA	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	275
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	454
XceI	RCATGY	1 cut(s)	128
XspI	CTAG	2 cut(s)	108, 275
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.