Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000540.1

Orthogroup ID

OG0003160

Physical Location & Seq

Genomic Coordinates Reverse (-)

194599 .. 195358

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000540.1_g000047.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgttgttggggaagagaccaaggcctccaatgaagaggaccacaagcatgtcagagatcacctttgatctgaacactgaagctcaacctcagccctcagatccccacaaccccttcagccctcgggcttttgatggccttgtggtgaagatggcctcctcatcaccctcacctagaaaccacagaaggaactcggctgatttcgttgagactcctcacttcttgagggcttgcggtctctgcaaacgccgccttgttcctggccgtgatatttacatgtacagaggtgatactgctttctgcagtctagagtgccggcagcaacagatgacccttgatgagaggaatgacaagtgttcatcttcggcttcaacagccgtcgtcgccggacaccatgtctcttccaaaggggaaactgtggccgctgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

143

Amino Acids

15.86

Weight (kDa)

9.36

Isoelectric Point (pI)

77.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003160)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22160 AT1G78020
fragaria_vesca	FvH4_1g21440 FvH4_5g37970 FvH4_5g37970
malus_domestica	MD00G1073400.v1.1 MD01G1025300.v1.1 MD08G1178500.v1.1 MD15G1363900.v1.1
prunus_persica	Prupe.1G512200_v2.0.a1 Prupe.6G180700_v2.0.a1
pyrus_communis	pycom01g05330 pycom08g15280 pycom15g29830 pycom15g32690
rosa_chinensis	RchiOBHm_Chr2g0115261 RchiOBHm_Chr7g0239911
rosa_laevigata	RLG00000000719 RLG00000018170
rosa_multiflora	Rmu_co8373487.1_g000001 Rmu_sc0000540.1_g000047 Rmu_sc0001626.1_g000049 Rmu_sc0002784.1_g000062
rosa_roxburghii	Rroxscaffold_2G00130800 Rroxscaffold_3G00220690
rosa_rugosa	Rorug02G0195400 Rorug07G0331100
rosa_samantha	Rh2AG253300 Rh2BG263500 Rh2CG258200 Rh2DG261500 Rh7AG484500 Rh7BG457700 Rh7CG502000 Rh7DG470200
rosa_wichuraiana	Rw2G019800 Rw7G040650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	234, 250, 423
AclWI	GGATC	1 cut(s)	95
AcoI	YGGCCR	2 cut(s)	262, 420
AcuI	CTGAAG	2 cut(s)	99, 100
AfaI	GTAC	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	1 cut(s)	372
AhdI	GACNNNNNGTC	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw26I	GTCTC	4 cut(s)	10, 203, 242, 403
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	5 cut(s)	23, 136, 153, 262, 420
ApeKI	GCWGC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	5 cut(s)	52, 156, 157, 162, 299
AvaI	CYCGRG	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	90
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	2 cut(s)	128, 145
BceAI	ACGGC	2 cut(s)	249, 362
BciT130I	CCWGG	1 cut(s)	261
BcoDI	GTCTC	4 cut(s)	10, 203, 242, 403
BfaI	CTAG	2 cut(s)	174, 308
BfmI	CTRYAG	1 cut(s)	301
BisI	GCNGC	3 cut(s)	250, 320, 423
BlsI	GCNGC	3 cut(s)	251, 321, 424
Bme1390I	CCNGG	1 cut(s)	261
Bme18I	GGWCC	1 cut(s)	39
BmeRI	GACNNNNNGTC	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	90
BpuEI	CTTGAG	1 cut(s)	244
BsaI	GGTCTC	2 cut(s)	10, 242
BsaJI	CCNNGG	2 cut(s)	20, 122
Bse118I	RCCGGY	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	20, 122
BseMII	CTCAG	2 cut(s)	104, 111
BseRI	GAGGAG	2 cut(s)	148, 204
BseXI	GCAGC	1 cut(s)	331
BshFI	GGCC	5 cut(s)	25, 138, 155, 264, 422
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	316, 387
BsmAI	GTCTC	4 cut(s)	10, 203, 242, 403
BsnI	GGCC	5 cut(s)	25, 138, 155, 264, 422
Bso31I	GGTCTC	2 cut(s)	10, 242
BsoBI	CYCGRG	1 cut(s)	123
Bsp1407I	TGTACA	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	57, 67, 100
BspACI	CCGC	3 cut(s)	234, 250, 423
BspANI	GGCC	5 cut(s)	25, 138, 155, 264, 422
BspCNI	CTCAG	2 cut(s)	103, 110
BspMAI	CTGCAG	1 cut(s)	305
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	2 cut(s)	10, 242
BsrFI	RCCGGY	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	20, 122
BssMI	GATC	3 cut(s)	57, 67, 100
BssT1I	CCWWGG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	418
Bst6I	CTCTTC	3 cut(s)	8, 29, 406
BstAUI	TGTACA	1 cut(s)	279
BstC8I	GCNNGC	2 cut(s)	232, 317
BstDEI	CTNAG	2 cut(s)	90, 97
BstKTI	GATC	3 cut(s)	60, 70, 103
BstMAI	GTCTC	4 cut(s)	10, 203, 242, 403
BstMBI	GATC	3 cut(s)	57, 67, 100
BstMWI	GCNNNNNNNGC	4 cut(s)	240, 249, 374, 383
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	2 cut(s)	52, 280
BstSCI	CCNGG	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuRI	GGCC	5 cut(s)	25, 138, 155, 264, 422
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	232, 317
Cfr10I	RCCGGY	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	3 cut(s)	49, 277, 395
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	90, 97
DpnI	GATC	3 cut(s)	59, 69, 102
DpnII	GATC	3 cut(s)	57, 67, 100
DriI	GACNNNNNGTC	1 cut(s)	395
EaeI	YGGCCR	2 cut(s)	262, 420
Eam1104I	CTCTTC	3 cut(s)	8, 29, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	395
EarI	CTCTTC	3 cut(s)	8, 29, 406
Eco130I	CCWWGG	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	25
Eco31I	GGTCTC	2 cut(s)	10, 242
Eco47I	GGWCC	1 cut(s)	39
Eco57I	CTGAAG	2 cut(s)	99, 100
Eco88I	CYCGRG	1 cut(s)	123
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	3 cut(s)	52, 280, 398
FaiI	YATR	3 cut(s)	50, 278, 396
FatI	CATG	3 cut(s)	48, 276, 394
Fnu4HI	GCNGC	3 cut(s)	250, 320, 423
Fsp4HI	GCNGC	3 cut(s)	250, 320, 423
FspBI	CTAG	2 cut(s)	174, 308
GluI	GCNGC	3 cut(s)	250, 320, 423
HaeIII	GGCC	5 cut(s)	25, 138, 155, 264, 422
HapII	CCGG	2 cut(s)	316, 387
Hin1II	CATG	3 cut(s)	52, 280, 398
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	2 cut(s)	316, 387
HphI	GGTGA	5 cut(s)	52, 156, 157, 162, 299
Hpy188I	TCNGA	3 cut(s)	55, 72, 100
Hpy188III	TCNNGA	2 cut(s)	223, 308
Hpy99I	CGWCG	2 cut(s)	383, 386
HpyAV	CCTTC	2 cut(s)	124, 180
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	2 cut(s)	243, 303
HpyF10VI	GCNNNNNNNGC	4 cut(s)	240, 249, 374, 383
HpyF3I	CTNAG	2 cut(s)	90, 97
Hsp92II	CATG	3 cut(s)	52, 280, 398
KroI	GCCGGC	1 cut(s)	315
KroNI	GCCGGC	1 cut(s)	317
Kzo9I	GATC	3 cut(s)	57, 67, 100
LpnPI	CCDG	4 cut(s)	246, 273, 329, 400
Lsp1109I	GCAGC	1 cut(s)	331
MaeI	CTAG	2 cut(s)	174, 308
MalI	GATC	3 cut(s)	59, 69, 102
MboI	GATC	3 cut(s)	57, 67, 100
MboII	GAAGA	5 cut(s)	25, 46, 160, 354, 393
MflI	RGATCY	1 cut(s)	100
MlyI	GAGTC	1 cut(s)	205
MroNI	GCCGGC	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	316, 387
MspR9I	CCNGG	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	261
MwoI	GCNNNNNNNGC	4 cut(s)	240, 249, 374, 383
NaeI	GCCGGC	1 cut(s)	317
NdeII	GATC	3 cut(s)	57, 67, 100
NgoMIV	GCCGGC	1 cut(s)	315
NlaIII	CATG	3 cut(s)	52, 280, 398
NmeAIII	GCCGAG	1 cut(s)	173
NspI	RCATGY	2 cut(s)	52, 280
PceI	AGGCCT	1 cut(s)	25
PciI	ACATGT	1 cut(s)	276
PdiI	GCCGGC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	251, 321, 424
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	100
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	47
SatI	GCNGC	3 cut(s)	250, 320, 423
Sau3AI	GATC	3 cut(s)	57, 67, 100
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	261
SetI	ASST	5 cut(s)	65, 85, 91, 175, 289
SfcI	CTRYAG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	25
SsiI	CCGC	3 cut(s)	234, 250, 423
SspMI	CTAG	2 cut(s)	174, 308
StuI	AGGCCT	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	259
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	418
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	2 cut(s)	252, 425
TscAI	CASTG	1 cut(s)	82
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	47, 348
TspRI	CASTG	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	39
XbaI	TCTAGA	1 cut(s)	307
XceI	RCATGY	2 cut(s)	52, 280
XspI	CTAG	2 cut(s)	174, 308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.