Rh7AG484500

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0003160
Physical Location & Seq
Forward (+)
68337804 .. 68339643
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG484500.1

Sequence Viewer

Length: 705 bp
ATGACGATTGGAGGGCTGACGTGGATTTCCTATATAATGCTAACAAGTCTCACAGTCTCTGTCTTTAATTCAATCAAACGGTCCAGATTCGCTCCTCAGTTTCTGGCCCTCCTCTTTATCTTCCCCTCCTTCTCTTCAGCCTTTACCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGATTTAGATTTAGAGAGAACAGCAGTTGTAGCAGTATTAATAGTTGTAGCAGAAGAGAGAAACAAAGAAGGAAGAGGAGCAAAAATGTTGTTGGGGAAGAGACCAAGGCCTCCAATGAAGAGGACCACAAGCATGTCAGAGATCACCTTTGATCTGAACACTGAAGCTCAACCTCAGCCCTCAGATCCCCACAACCCCTTCAGCCCTCTGGCGTTTGATGGCCTTATGGTGAAGATGGCCTCCTCATCACCCTCACCTAGAAACCACAGAAGGAACTCGGCTGATTTCGTTGAGACTCCTCACTTCTTGAGGGCTTGCGGTCTCTGCAAACGCCGCCTTGTTCCTGGCCGTGATATTTACATGTACAGAGGTGATACTGCTTTCTGCAGTCTAGAGTGCCGGCAGCAACAGATGACCCTTGATGAGAGGAATGACAAGTGTTCATCTTCGGCTTCCACAGCCGTCGTCGCCGGACACCATGTCTCTTCCAAAGGGGAAACTGTGGCCGCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

234

Amino Acids

25.79

Weight (kDa)

9.4

Isoelectric Point (pI)

65.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 158 - 206 1.7e-26 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 507, 523, 696
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 2 cut(s) 535, 693
AcuI CTGAAG 3 cut(s) 120, 372, 373
AfaI GTAC 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 549
AgsI TTSAA 1 cut(s) 72
AhdI GACNNNNNGTC 1 cut(s) 668
AjiI CACGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 532
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 6 cut(s) 53, 61, 283, 476, 515, 676
AlwI GGATC 1 cut(s) 368
AlwNI CAGNNNCTG 2 cut(s) 59, 103
AoxI GGCC 6 cut(s) 105, 296, 409, 426, 535, 693
ApeKI GCWGC 1 cut(s) 592
AseI ATTAAT 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 81, 106, 312
AsuHPI GGTGA 5 cut(s) 325, 429, 430, 435, 572
AvaII GGWCC 2 cut(s) 81, 312
BbvCI CCTCAGC 1 cut(s) 363
BbvI GCAGC 1 cut(s) 604
BccI CCATC 2 cut(s) 401, 418
BceAI ACGGC 2 cut(s) 522, 635
BciT130I CCWGG 1 cut(s) 534
BcoDI GTCTC 6 cut(s) 53, 61, 283, 476, 515, 676
BfaI CTAG 2 cut(s) 447, 581
BfmI CTRYAG 1 cut(s) 574
BisI GCNGC 3 cut(s) 523, 593, 696
BlsI GCNGC 3 cut(s) 524, 594, 697
Bme1390I CCNGG 1 cut(s) 534
Bme18I GGWCC 2 cut(s) 81, 312
BmeRI GACNNNNNGTC 1 cut(s) 668
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 3 cut(s) 81, 106, 312
BmrFI CCNGG 1 cut(s) 534
Bpu10I CCTNAGC 1 cut(s) 363
BpuEI CTTGAG 1 cut(s) 517
BsaI GGTCTC 2 cut(s) 283, 515
BsaJI CCNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 588
BseBI CCWGG 1 cut(s) 534
BseDI CCNNGG 1 cut(s) 293
BseMII CTCAG 4 cut(s) 110, 200, 377, 384
BseRI GAGGAG 5 cut(s) 84, 101, 279, 421, 477
BseXI GCAGC 1 cut(s) 604
BshFI GGCC 6 cut(s) 107, 298, 411, 428, 537, 695
BsiSI CCGG 2 cut(s) 589, 660
BsmAI GTCTC 6 cut(s) 53, 61, 283, 476, 515, 676
BsnI GGCC 6 cut(s) 107, 298, 411, 428, 537, 695
Bso31I GGTCTC 2 cut(s) 283, 515
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 3 cut(s) 330, 340, 373
BspACI CCGC 3 cut(s) 507, 523, 696
BspANI GGCC 6 cut(s) 107, 298, 411, 428, 537, 695
BspCNI CTCAG 4 cut(s) 109, 199, 376, 383
BspMAI CTGCAG 1 cut(s) 578
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 2 cut(s) 283, 515
BsrFI RCCGGY 1 cut(s) 588
BsrGI TGTACA 1 cut(s) 552
BssAI RCCGGY 1 cut(s) 588
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 3 cut(s) 330, 340, 373
BssT1I CCWWGG 1 cut(s) 293
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 55, 81, 691
Bst6I CTCTTC 6 cut(s) 139, 237, 256, 281, 302, 679
BstAUI TGTACA 1 cut(s) 552
BstC8I GCNNGC 2 cut(s) 505, 590
BstDEI CTNAG 4 cut(s) 96, 186, 363, 370
BstKTI GATC 3 cut(s) 333, 343, 376
BstMAI GTCTC 6 cut(s) 53, 61, 283, 476, 515, 676
BstMBI GATC 3 cut(s) 330, 340, 373
BstMWI GCNNNNNNNGC 5 cut(s) 218, 513, 522, 647, 656
BstNI CCWGG 1 cut(s) 534
BstNSI RCATGY 2 cut(s) 325, 553
BstSCI CCNGG 1 cut(s) 532
BstSFI CTRYAG 1 cut(s) 574
BstV1I GCAGC 1 cut(s) 604
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 6 cut(s) 107, 298, 411, 428, 537, 695
BtrI CACGTC 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 505, 590
CaiI CAGNNNCTG 2 cut(s) 59, 103
Cfr10I RCCGGY 1 cut(s) 588
Cfr13I GGNCC 3 cut(s) 81, 106, 312
Csp6I GTAC 1 cut(s) 553
CviAII CATG 3 cut(s) 322, 550, 668
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 4 cut(s) 96, 186, 363, 370
DpnI GATC 3 cut(s) 332, 342, 375
DpnII GATC 3 cut(s) 330, 340, 373
DriI GACNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 2 cut(s) 535, 693
Eam1104I CTCTTC 6 cut(s) 139, 237, 256, 281, 302, 679
Eam1105I GACNNNNNGTC 1 cut(s) 668
EarI CTCTTC 6 cut(s) 139, 237, 256, 281, 302, 679
Eco130I CCWWGG 1 cut(s) 293
Eco147I AGGCCT 1 cut(s) 298
Eco31I GGTCTC 2 cut(s) 283, 515
Eco47I GGWCC 2 cut(s) 81, 312
Eco57I CTGAAG 3 cut(s) 120, 372, 373
EcoRII CCWGG 1 cut(s) 532
EcoT14I CCWWGG 1 cut(s) 293
ErhI CCWWGG 1 cut(s) 293
FaeI CATG 3 cut(s) 325, 553, 671
FaiI YATR 6 cut(s) 33, 35, 323, 416, 551, 669
FatI CATG 3 cut(s) 321, 549, 667
Fnu4HI GCNGC 3 cut(s) 523, 593, 696
Fsp4HI GCNGC 3 cut(s) 523, 593, 696
FspBI CTAG 2 cut(s) 447, 581
GluI GCNGC 3 cut(s) 523, 593, 696
HaeIII GGCC 6 cut(s) 107, 298, 411, 428, 537, 695
HapII CCGG 2 cut(s) 589, 660
Hin1II CATG 3 cut(s) 325, 553, 671
HinfI GANTC 2 cut(s) 87, 484
HpaII CCGG 2 cut(s) 589, 660
HphI GGTGA 5 cut(s) 325, 429, 430, 435, 572
Hpy188I TCNGA 3 cut(s) 328, 345, 373
Hpy188III TCNNGA 4 cut(s) 84, 188, 496, 581
Hpy99I CGWCG 2 cut(s) 656, 659
HpyAV CCTTC 4 cut(s) 139, 251, 397, 453
HpyCH4III ACNGT 3 cut(s) 55, 81, 691
HpyCH4IV ACGT 1 cut(s) 20
HpyCH4V TGCA 2 cut(s) 516, 576
HpyF10VI GCNNNNNNNGC 5 cut(s) 218, 513, 522, 647, 656
HpyF3I CTNAG 4 cut(s) 96, 186, 363, 370
HpySE526I ACGT 1 cut(s) 20
Hsp92II CATG 3 cut(s) 325, 553, 671
KroI GCCGGC 1 cut(s) 588
KroNI GCCGGC 1 cut(s) 590
Kzo9I GATC 3 cut(s) 330, 340, 373
LmnI GCTCC 2 cut(s) 97, 266
LpnPI CCDG 8 cut(s) 89, 97, 173, 383, 519, 546, 602, 673
Lsp1109I GCAGC 1 cut(s) 604
MaeI CTAG 2 cut(s) 447, 581
MaeII ACGT 1 cut(s) 20
MalI GATC 3 cut(s) 332, 342, 375
MboI GATC 3 cut(s) 330, 340, 373
MboII GAAGA 9 cut(s) 112, 126, 254, 273, 298, 319, 433, 627, 666
MflI RGATCY 1 cut(s) 373
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 478
MroNI GCCGGC 1 cut(s) 588
MseI TTAA 2 cut(s) 66, 227
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 2 cut(s) 589, 660
MspR9I CCNGG 1 cut(s) 534
MvaI CCWGG 1 cut(s) 534
MwoI GCNNNNNNNGC 5 cut(s) 218, 513, 522, 647, 656
NaeI GCCGGC 1 cut(s) 590
NdeII GATC 3 cut(s) 330, 340, 373
NgoMIV GCCGGC 1 cut(s) 588
NlaIII CATG 3 cut(s) 325, 553, 671
NmeAIII GCCGAG 1 cut(s) 446
NspI RCATGY 2 cut(s) 325, 553
PceI AGGCCT 1 cut(s) 298
PciI ACATGT 1 cut(s) 549
PdiI GCCGGC 1 cut(s) 590
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 3 cut(s) 524, 594, 697
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
PscI ACATGT 1 cut(s) 549
PshBI ATTAAT 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspPI GGNCC 3 cut(s) 81, 106, 312
PstI CTGCAG 1 cut(s) 578
PstNI CAGNNNCTG 2 cut(s) 59, 103
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 2 cut(s) 66, 227
SatI GCNGC 3 cut(s) 523, 593, 696
Sau3AI GATC 3 cut(s) 330, 340, 373
Sau96I GGNCC 3 cut(s) 81, 106, 312
SchI GAGTC 1 cut(s) 478
ScrFI CCNGG 1 cut(s) 534
SetI ASST 6 cut(s) 23, 338, 358, 364, 448, 562
SfcI CTRYAG 1 cut(s) 574
SinI GGWCC 2 cut(s) 81, 312
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 496
SmoI CTYRAG 1 cut(s) 496
Sse9I AATT 1 cut(s) 67
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 3 cut(s) 507, 523, 696
SspMI CTAG 2 cut(s) 447, 581
StuI AGGCCT 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 532
StyI CCWWGG 1 cut(s) 293
TaaI ACNGT 3 cut(s) 55, 81, 691
TaiI ACGT 1 cut(s) 23
TasI AATT 1 cut(s) 67
TatI WGTACW 1 cut(s) 552
TauI GCSGC 2 cut(s) 525, 698
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 2 cut(s) 66, 227
Tru9I TTAA 2 cut(s) 66, 227
TscAI CASTG 1 cut(s) 355
TseI GCWGC 1 cut(s) 592
TspDTI ATGAA 2 cut(s) 320, 621
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 2 cut(s) 81, 312
VspI ATTAAT 1 cut(s) 227
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 2 cut(s) 325, 553
XspI CTAG 2 cut(s) 447, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.