MD08G1178500.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0003160
Physical Location & Seq
Reverse (-)
21922445 .. 21922834
390 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1178500.v1.1.491

Sequence Viewer

Length: 390 bp
ATGTTGTTGGGGAAGAGACCAAGGCCTCCAATGAAGAGGACCACAAGCATGTCAGAAATCACCTTCGATCTGAACACCATTAGTACTGGGGCACCTCATTCTCAACCGTCCGATCCCAACAACCCTTATCAGCCTCTGGCCTTATGGGGCAGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGGTGGTGGGCTTGATGGGTTGGATCAACGGCTTATGATGAAGTTGCCTTCACCATCATCAGCATCGCCAAGAAACCACAGAAGAAGTTCTGCTGATTTTGGAGAAACTGCCCACTTCTTGAAGGCTTGTGGTCTCTGCAAACGCCGACTTATTCCCGGCCGCGATATTTACATGTACAGGTATTCTTCTTCTTCATTAGAAATTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

130

Amino Acids

13.89

Weight (kDa)

9.85

Isoelectric Point (pI)

77.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 93 - 122 1.1e-11 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 91
AccII CGCG 1 cut(s) 342
AciI CCGC 1 cut(s) 340
AclWI GGATC 2 cut(s) 107, 210
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 381
AfaI GTAC 2 cut(s) 85, 356
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 1 cut(s) 301
Alw26I GTCTC 2 cut(s) 10, 317
AlwI GGATC 2 cut(s) 107, 210
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 3 cut(s) 23, 138, 337
ApoI RAATTY 1 cut(s) 381
Asp700I GAANNNNTTC 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 52, 222
AvaII GGWCC 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 94
BanI GGYRCC 1 cut(s) 91
BccI CCATC 2 cut(s) 188, 241
BceAI ACGGC 1 cut(s) 224
BcnI CCSGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 10, 317
BfaI CTAG 1 cut(s) 388
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
BmcAI AGTACT 1 cut(s) 85
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 336
BsaI GGTCTC 2 cut(s) 10, 317
BsaJI CCNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 94
BseX3I CGGCCG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 3 cut(s) 25, 140, 339
BshNI GGYRCC 1 cut(s) 91
BsiEI CGRYCG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 336
BsmAI GTCTC 2 cut(s) 10, 317
BsnI GGCC 3 cut(s) 25, 140, 339
Bso31I GGTCTC 2 cut(s) 10, 317
Bsp1286I GDGCHC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 354
Bsp143I GATC 3 cut(s) 67, 112, 202
BspACI CCGC 1 cut(s) 340
BspANI GGCC 3 cut(s) 25, 140, 339
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 107, 210
BspT107I GGYRCC 1 cut(s) 91
BspTNI GGTCTC 2 cut(s) 10, 317
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 20
BssMI GATC 3 cut(s) 67, 112, 202
BssT1I CCWWGG 1 cut(s) 20
Bst4CI ACNGT 1 cut(s) 108
Bst6I CTCTTC 2 cut(s) 8, 29
BstAUI TGTACA 1 cut(s) 354
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 3 cut(s) 70, 115, 205
BstMAI GTCTC 2 cut(s) 10, 317
BstMBI GATC 3 cut(s) 67, 112, 202
BstMCI CGRYCG 1 cut(s) 340
BstNSI RCATGY 2 cut(s) 52, 355
BstSCI CCNGG 1 cut(s) 334
BstSLI GKGCMC 1 cut(s) 94
BstUI CGCG 1 cut(s) 342
BstZI CGGCCG 1 cut(s) 337
BsuRI GGCC 3 cut(s) 25, 140, 339
BtgZI GCGATG 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 157
CaiI CAGNNNCTG 1 cut(s) 136
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 84, 355
CviAII CATG 2 cut(s) 49, 352
CviJI RGCY 7 cut(s) 25, 133, 140, 190, 211, 305, 339
CviKI_1 RGCY 7 cut(s) 25, 133, 140, 190, 211, 305, 339
CviQI GTAC 2 cut(s) 84, 355
DpnI GATC 3 cut(s) 69, 114, 204
DpnII GATC 3 cut(s) 67, 112, 202
EaeI YGGCCR 1 cut(s) 337
EagI CGGCCG 1 cut(s) 337
Eam1104I CTCTTC 2 cut(s) 8, 29
EarI CTCTTC 2 cut(s) 8, 29
EclXI CGGCCG 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 25
Eco31I GGTCTC 2 cut(s) 10, 317
Eco47I GGWCC 1 cut(s) 39
Eco52I CGGCCG 1 cut(s) 337
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 52, 355
FaiI YATR 4 cut(s) 50, 145, 215, 353
FatI CATG 2 cut(s) 48, 351
Fnu4HI GCNGC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 1 cut(s) 388
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 3 cut(s) 25, 140, 339
HapII CCGG 1 cut(s) 336
Hin1II CATG 2 cut(s) 52, 355
HpaII CCGG 1 cut(s) 336
HphI GGTGA 2 cut(s) 52, 222
Hpy188I TCNGA 3 cut(s) 55, 72, 112
Hpy188III TCNNGA 1 cut(s) 298
HpyAV CCTTC 3 cut(s) 73, 237, 295
HpyCH4III ACNGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 318
Hsp92II CATG 2 cut(s) 52, 355
Kzo9I GATC 3 cut(s) 67, 112, 202
LpnPI CCDG 4 cut(s) 72, 122, 343, 349
LweI GCATC 1 cut(s) 251
MaeI CTAG 1 cut(s) 388
MalI GATC 3 cut(s) 69, 114, 204
MboI GATC 3 cut(s) 67, 112, 202
MboII GAAGA 6 cut(s) 25, 46, 273, 357, 360, 363
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 30, 36, 105, 144
MroXI GAANNNNTTC 1 cut(s) 265
MslI CAYNNNNRTG 1 cut(s) 47
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 1 cut(s) 336
MvnI CGCG 1 cut(s) 342
NciI CCSGG 1 cut(s) 336
NdeII GATC 3 cut(s) 67, 112, 202
NlaIII CATG 2 cut(s) 52, 355
NlaIV GGNNCC 1 cut(s) 93
NspI RCATGY 2 cut(s) 52, 355
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 265
PkrI GCNGC 1 cut(s) 341
PscI ACATGT 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 39
PstNI CAGNNNCTG 1 cut(s) 136
RsaI GTAC 2 cut(s) 85, 356
RsaNI GTAC 2 cut(s) 84, 355
RseI CAYNNNNRTG 1 cut(s) 47
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 3 cut(s) 67, 112, 202
Sau96I GGNCC 1 cut(s) 39
ScaI AGTACT 1 cut(s) 85
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 94
SetI ASST 3 cut(s) 65, 97, 362
SfaNI GCATC 1 cut(s) 251
SinI GGWCC 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 381
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 1 cut(s) 340
SspMI CTAG 1 cut(s) 388
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 66
TasI AATT 1 cut(s) 381
TatI WGTACW 2 cut(s) 83, 354
TauI GCSGC 1 cut(s) 342
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 3 cut(s) 47, 233, 363
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 39
XapI RAATTY 1 cut(s) 381
XceI RCATGY 2 cut(s) 52, 355
XmnI GAANNNNTTC 1 cut(s) 265
XspI CTAG 1 cut(s) 388
ZrmI AGTACT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.