Rmu_co8373487.1_g000001

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8373487.1
OG0003160
Physical Location & Seq
Reverse (-)
1 .. 582
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8373487.1_g000001.1.cds

Sequence Viewer

Length: 356 bp
atgttgttagggaagcgtcctcgcccaccgattcggagaacgacaagcatgaccgggatcaccgtcgatctgaacaacgtggaagaccaggagccgactgaaaaccctagcatgatggatgtgcatgcatcatcgacggtggtgggccctgatgggcctgttaattataatcagagccctaacagcttggggtatcatgaacagcaccgtttcttggccatgttgtcacccagaaccaacagcagcaaccacagaagaaactcggcctccgacctagtcgaaaccgctcacttcctccgcacgtgcggcctctgcaaacggagcttggcttccggccgcgacctctatatgtatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

8.74

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AccBSI CCGCTC 1 cut(s) 287
AccII CGCG 1 cut(s) 339
AciI CCGC 4 cut(s) 285, 298, 306, 337
AclWI GGATC 1 cut(s) 65
AcoI YGGCCR 2 cut(s) 216, 334
AcvI CACGTG 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 214
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 186, 324
AluI AGCT 2 cut(s) 186, 324
AlwI GGATC 1 cut(s) 65
AoxI GGCC 6 cut(s) 145, 155, 216, 264, 307, 334
ApaI GGGCCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 243
AspS9I GGNCC 3 cut(s) 145, 146, 155
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 52, 219
BaeGI GKGCMC 1 cut(s) 149
BalI TGGCCA 1 cut(s) 218
BanII GRGCYC 2 cut(s) 149, 179
BbrPI CACGTG 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 255
BccI CCATC 2 cut(s) 109, 146
BciT130I CCWGG 1 cut(s) 89
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 2 cut(s) 108, 275
BisI GCNGC 3 cut(s) 244, 307, 337
BlsI GCNGC 3 cut(s) 245, 308, 338
Bme1390I CCNGG 2 cut(s) 55, 89
BmgT120I GGNCC 3 cut(s) 145, 146, 155
BmiI GGNNCC 2 cut(s) 93, 147
BmrFI CCNGG 2 cut(s) 55, 89
BmsI GCATC 1 cut(s) 137
BpiI GAAGAC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 303
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseBI CCWGG 1 cut(s) 89
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 1 cut(s) 214
BseSI GKGCMC 1 cut(s) 149
BseX3I CGGCCG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 339
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 6 cut(s) 147, 157, 218, 266, 309, 336
BsiEI CGRYCG 1 cut(s) 337
BsiSI CCGG 2 cut(s) 54, 333
BslI CCNNNNNNNGG 1 cut(s) 214
BsnI GGCC 6 cut(s) 147, 157, 218, 266, 309, 336
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 149, 179
Bsp143I GATC 2 cut(s) 57, 67
BspACI CCGC 4 cut(s) 285, 298, 306, 337
BspANI GGCC 6 cut(s) 147, 157, 218, 266, 309, 336
BspFNI CGCG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 2 cut(s) 93, 147
BspPI GGATC 1 cut(s) 65
BsrBI CCGCTC 1 cut(s) 287
BssMI GATC 2 cut(s) 57, 67
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 64, 139, 209
BstBAI YACGTR 1 cut(s) 303
BstC8I GCNNGC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 339
BstKTI GATC 2 cut(s) 60, 70
BstMBI GATC 2 cut(s) 57, 67
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 4 cut(s) 183, 306, 312, 321
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 53, 87
BstSLI GKGCMC 1 cut(s) 149
BstUI CGCG 1 cut(s) 339
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 90
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 6 cut(s) 147, 157, 218, 266, 309, 336
BtsCI GGATG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 3 cut(s) 145, 146, 155
CseI GACGC 1 cut(s) 5
CviAII CATG 5 cut(s) 49, 112, 125, 197, 220
DpnI GATC 2 cut(s) 59, 69
DpnII GATC 2 cut(s) 57, 67
EaeI YGGCCR 2 cut(s) 216, 334
EagI CGGCCG 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 149, 179
Eco52I CGGCCG 1 cut(s) 334
Eco72I CACGTG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 130
EcoT38I GRGCYC 2 cut(s) 149, 179
FaeI CATG 5 cut(s) 52, 115, 128, 200, 223
FaiI YATR 9 cut(s) 50, 113, 126, 168, 198, 221, 348, 350, 354
FatI CATG 5 cut(s) 48, 111, 124, 196, 219
Fnu4HI GCNGC 3 cut(s) 244, 307, 337
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 2 cut(s) 149, 179
Fsp4HI GCNGC 3 cut(s) 244, 307, 337
FspBI CTAG 2 cut(s) 108, 275
GluI GCNGC 3 cut(s) 244, 307, 337
HaeIII GGCC 6 cut(s) 147, 157, 218, 266, 309, 336
HapII CCGG 2 cut(s) 54, 333
HgaI GACGC 1 cut(s) 5
Hin1II CATG 5 cut(s) 52, 115, 128, 200, 223
HinfI GANTC 1 cut(s) 31
HpaII CCGG 2 cut(s) 54, 333
HphI GGTGA 2 cut(s) 52, 219
Hpy188I TCNGA 4 cut(s) 36, 72, 174, 271
Hpy188III TCNNGA 1 cut(s) 197
Hpy99I CGWCG 2 cut(s) 68, 139
HpyCH4III ACNGT 3 cut(s) 64, 139, 209
HpyCH4IV ACGT 2 cut(s) 78, 302
HpyCH4V TGCA 3 cut(s) 124, 128, 315
HpyF10VI GCNNNNNNNGC 4 cut(s) 183, 306, 312, 321
HpySE526I ACGT 2 cut(s) 78, 302
Hsp92II CATG 5 cut(s) 52, 115, 128, 200, 223
Kzo9I GATC 2 cut(s) 57, 67
LmnI GCTCC 2 cut(s) 91, 321
LpnPI CCDG 7 cut(s) 67, 74, 101, 162, 171, 244, 346
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 137
MaeI CTAG 2 cut(s) 108, 275
MaeII ACGT 2 cut(s) 78, 302
MaeIII GTNAC 1 cut(s) 225
MalI GATC 2 cut(s) 59, 69
MbiI CCGCTC 1 cut(s) 287
MboI GATC 2 cut(s) 57, 67
MboII GAAGA 2 cut(s) 95, 267
MhlI GDGCHC 2 cut(s) 149, 179
MlsI TGGCCA 1 cut(s) 218
MluCI AATT 1 cut(s) 163
MluNI TGGCCA 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 5 cut(s) 30, 277, 305, 320, 353
Mox20I TGGCCA 1 cut(s) 218
Mph1103I ATGCAT 1 cut(s) 130
MscI TGGCCA 1 cut(s) 218
MseI TTAA 1 cut(s) 162
Msp20I TGGCCA 1 cut(s) 218
MspI CCGG 2 cut(s) 54, 333
MspR9I CCNGG 2 cut(s) 55, 89
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 339
MwoI GCNNNNNNNGC 4 cut(s) 183, 306, 312, 321
NciI CCSGG 1 cut(s) 55
NdeII GATC 2 cut(s) 57, 67
NlaIII CATG 5 cut(s) 52, 115, 128, 200, 223
NlaIV GGNNCC 2 cut(s) 93, 147
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 130
NspI RCATGY 1 cut(s) 128
PaeI GCATGC 1 cut(s) 128
PagI TCATGA 1 cut(s) 196
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 3 cut(s) 245, 308, 338
PmaCI CACGTG 1 cut(s) 303
PmlI CACGTG 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 303
PsiI TTATAA 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 87
PspCI CACGTG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 93, 147
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 3 cut(s) 145, 146, 155
PsyI GACNNNGTC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 244, 307, 337
Sau3AI GATC 2 cut(s) 57, 67
Sau96I GGNCC 3 cut(s) 145, 146, 155
ScrFI CCNGG 2 cut(s) 55, 89
SduI GDGCHC 2 cut(s) 149, 179
SetI ASST 6 cut(s) 81, 188, 276, 305, 326, 345
SfaNI GCATC 1 cut(s) 137
SphI GCATGC 1 cut(s) 128
Sse9I AATT 1 cut(s) 163
SsiI CCGC 4 cut(s) 285, 298, 306, 337
SspMI CTAG 2 cut(s) 108, 275
StyD4I CCNGG 2 cut(s) 53, 87
TaaI ACNGT 3 cut(s) 64, 139, 209
TaiI ACGT 2 cut(s) 81, 305
TaqI TCGA 3 cut(s) 66, 134, 279
TasI AATT 1 cut(s) 163
TauI GCSGC 2 cut(s) 309, 339
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TseFI GTSAC 1 cut(s) 225
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 275
XceI RCATGY 1 cut(s) 128
XspI CTAG 2 cut(s) 108, 275
Zsp2I ATGCAT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.