AT1G27740

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002575
Physical Location & Seq
Forward (+)
9654475 .. 9656089
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27740.1

Sequence Viewer

Length: 777 bp
ATGGACGTTTTTGTTGATGGTGAATTGGAGTCTCTCTTGGGGATGTTCAACTTTGATCAATGTTCATCATCTAAAGAGGAGAGACCGCGAGACGAGTTGCTTGGCCTCTCTAGCCTTTACAATGGTCATCTTCATCAACATCAACACCATAACAATGTCTTATCTTCTGATCATCATGCTTTCTTGCTCCCTGATATGTTCCCATTTGGTGCAATGCCGGGAGGAAATCTTCCGGCCATGCTTGATTCTTGGGATCAAAGTCATCACCTCCAAGAAACGTCTTCTCTTAAGAGGAAACTACTTGACGTGGAGAATCTATGCAAAACTAACTCTAACTGTGACGTCACAAGACAAGAGCTTGCGAAATCCAAGAAAAAACAGAGGGTAAGCTCGGAAAGCAATACAGTTGACGAGAGCAACACTAATTGGGTAGATGGTCAGAGTTTAAGCAACAGTTCAGATGATGAGAAAGCTTCGGTCACAAGTGTTAAAGGCAAAACTAGAGCCACCAAAGGGACAGCCACTGATCCTCAAAGCCTTTATGCTCGGAAACGAAGAGAGAAGATTAACGAAAGGCTCAAGACACTACAAAACCTTGTGCCAAACGGGACAAAAGTCGATATAAGCACGATGCTTGAAGAAGCGGTCCATTACGTGAAGTTCTTGCAGCTTCAGATTAAGTTGTTGAGCTCGGATGATCTATGGATGTACGCACCATTGGCTTACAACGGCCTGGACATGGGGTTCCATCACAACCTTTTGTCTCGGCTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

258

Amino Acids

29.16

Weight (kDa)

6.17

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 183 - 223 1.6e-09 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 184 - 230 6.6e-06 Transcription factor SAC51 bHLH domain
bHLH_LHW PF23176 185 - 223 8.9e-07 Transcription factor LHW bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 345
AccII CGCG 1 cut(s) 88
AciI CCGC 2 cut(s) 86, 644
AclWI GGATC 2 cut(s) 261, 521
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 656
AcyI GRCGYC 1 cut(s) 342
AfaI GTAC 1 cut(s) 710
AfiI CCNNNNNNNGG 2 cut(s) 513, 739
AflII CTTAAG 1 cut(s) 287
AgsI TTSAA 2 cut(s) 49, 638
AjiI CACGTC 1 cut(s) 307
AjnI CCWGG 1 cut(s) 732
AloI GAACNNNNNNTCC 2 cut(s) 728, 760
AluBI AGCT 5 cut(s) 358, 390, 473, 670, 690
AluI AGCT 5 cut(s) 358, 390, 473, 670, 690
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 4 cut(s) 36, 76, 84, 768
AlwI GGATC 2 cut(s) 261, 521
AlwNI CAGNNNCTG 1 cut(s) 524
AoxI GGCC 3 cut(s) 103, 234, 730
ApeKI GCWGC 1 cut(s) 667
AspS9I GGNCC 1 cut(s) 646
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 32, 257
AvaII GGWCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 692
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 1 cut(s) 679
BccI CCATC 3 cut(s) 11, 428, 756
BceAI ACGGC 1 cut(s) 745
BciT130I CCWGG 1 cut(s) 734
BclI TGATCA 2 cut(s) 55, 169
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 4 cut(s) 36, 76, 84, 768
BfaI CTAG 2 cut(s) 111, 501
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 668
BlsI GCNGC 1 cut(s) 669
Bme1390I CCNGG 2 cut(s) 219, 734
Bme18I GGWCC 1 cut(s) 646
BmgBI CACGTC 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 646
BmiI GGNNCC 1 cut(s) 746
BmrFI CCNGG 2 cut(s) 219, 734
BmsI GCATC 1 cut(s) 621
BoxI GACNNNNGTC 1 cut(s) 614
BpiI GAAGAC 1 cut(s) 273
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 655
BsaHI GRCGYC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 513, 739
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 734
BseGI GGATG 3 cut(s) 48, 700, 711
BseLI CCNNNNNNNGG 2 cut(s) 513, 739
BseMI GCAATG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 679
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 105, 236, 732
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 2 cut(s) 218, 233
BslFI GGGAC 2 cut(s) 529, 622
BslI CCNNNNNNNGG 2 cut(s) 513, 739
BsmAI GTCTC 4 cut(s) 36, 76, 84, 768
BsmBI CGTCTC 1 cut(s) 84
BsmFI GGGAC 2 cut(s) 529, 622
BsnI GGCC 3 cut(s) 105, 236, 732
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 5 cut(s) 55, 169, 253, 526, 697
BspACI CCGC 2 cut(s) 86, 644
BspANI GGCC 3 cut(s) 105, 236, 732
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 746
BspPI GGATC 2 cut(s) 261, 521
BspTI CTTAAG 1 cut(s) 287
BspTNI GGTCTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 219
BssMI GATC 5 cut(s) 55, 169, 253, 526, 697
BssNI GRCGYC 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 734
Bst4CI ACNGT 3 cut(s) 338, 406, 455
Bst6I CTCTTC 1 cut(s) 550
BstACI GRCGYC 1 cut(s) 342
BstAFI CTTAAG 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 655
BstC8I GCNNGC 1 cut(s) 360
BstF5I GGATG 3 cut(s) 48, 700, 711
BstFNI CGCG 1 cut(s) 88
BstKTI GATC 5 cut(s) 58, 172, 256, 529, 700
BstMAI GTCTC 4 cut(s) 36, 76, 84, 768
BstMBI GATC 5 cut(s) 55, 169, 253, 526, 697
BstMWI GCNNNNNNNGC 3 cut(s) 111, 396, 719
BstNI CCWGG 1 cut(s) 734
BstPAI GACNNNNGTC 1 cut(s) 614
BstSCI CCNGG 2 cut(s) 217, 732
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 679
BstV2I GAAGAC 1 cut(s) 273
BsuRI GGCC 3 cut(s) 105, 236, 732
BtrI CACGTC 1 cut(s) 307
BtsCI GGATG 3 cut(s) 48, 700, 711
BtsIMutI CAGTG 1 cut(s) 522
Cac8I GCNNGC 1 cut(s) 360
CaiI CAGNNNCTG 1 cut(s) 524
Cfr13I GGNCC 1 cut(s) 646
Csp6I GTAC 1 cut(s) 709
CviAII CATG 3 cut(s) 176, 238, 739
CviQI GTAC 1 cut(s) 709
DpnI GATC 5 cut(s) 57, 171, 255, 528, 699
DpnII GATC 5 cut(s) 55, 169, 253, 526, 697
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 550
EarI CTCTTC 1 cut(s) 550
Ecl136II GAGCTC 1 cut(s) 690
Eco24I GRGCYC 1 cut(s) 692
Eco31I GGTCTC 1 cut(s) 76
Eco47I GGWCC 1 cut(s) 646
Eco53kI GAGCTC 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 656
EcoICRI GAGCTC 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 692
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 3 cut(s) 179, 241, 742
FaqI GGGAC 2 cut(s) 529, 622
FatI CATG 3 cut(s) 175, 237, 738
FbaI TGATCA 2 cut(s) 55, 169
Fnu4HI GCNGC 1 cut(s) 668
FokI GGATG 3 cut(s) 55, 707, 718
FriOI GRGCYC 1 cut(s) 692
Fsp4HI GCNGC 1 cut(s) 668
FspBI CTAG 2 cut(s) 111, 501
GluI GCNGC 1 cut(s) 668
HaeIII GGCC 3 cut(s) 105, 236, 732
HapII CCGG 2 cut(s) 218, 233
Hin1I GRCGYC 1 cut(s) 342
Hin1II CATG 3 cut(s) 179, 241, 742
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HindIII AAGCTT 1 cut(s) 471
HinfI GANTC 3 cut(s) 29, 245, 313
HpaII CCGG 2 cut(s) 218, 233
HphI GGTGA 2 cut(s) 32, 257
Hpy166II GTNNAC 1 cut(s) 409
Hpy188I TCNGA 7 cut(s) 169, 394, 441, 460, 549, 675, 694
Hpy188III TCNNGA 1 cut(s) 580
Hpy8I GTNNAC 1 cut(s) 409
HpyCH4III ACNGT 3 cut(s) 338, 406, 455
HpyCH4IV ACGT 5 cut(s) 6, 278, 306, 342, 654
HpyCH4V TGCA 3 cut(s) 212, 321, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 111, 396, 719
HpySE526I ACGT 5 cut(s) 6, 278, 306, 342, 654
Hsp92I GRCGYC 1 cut(s) 342
Hsp92II CATG 3 cut(s) 179, 241, 742
Ksp22I TGATCA 2 cut(s) 55, 169
Kzo9I GATC 5 cut(s) 55, 169, 253, 526, 697
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 5 cut(s) 204, 231, 246, 719, 746
Lsp1109I GCAGC 1 cut(s) 679
LweI GCATC 1 cut(s) 621
MaeI CTAG 2 cut(s) 111, 501
MaeII ACGT 5 cut(s) 6, 278, 306, 342, 654
MaeIII GTNAC 3 cut(s) 338, 343, 478
MalI GATC 5 cut(s) 57, 171, 255, 528, 699
MboI GATC 5 cut(s) 55, 169, 253, 526, 697
MboII GAAGA 7 cut(s) 122, 156, 221, 273, 567, 574, 650
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 2 cut(s) 23, 424
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 7 cut(s) 70, 116, 215, 278, 285, 375, 540
MseI TTAA 5 cut(s) 288, 446, 489, 567, 678
MslI CAYNNNNRTG 1 cut(s) 153
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 2 cut(s) 218, 233
MspR9I CCNGG 2 cut(s) 219, 734
MvaI CCWGG 1 cut(s) 734
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 111, 396, 719
NciI CCSGG 1 cut(s) 219
NdeII GATC 5 cut(s) 55, 169, 253, 526, 697
NlaIII CATG 3 cut(s) 179, 241, 742
NlaIV GGNNCC 1 cut(s) 746
NmeAIII GCCGAG 1 cut(s) 745
NmuCI GTSAC 3 cut(s) 338, 343, 478
PfeI GAWTC 2 cut(s) 245, 313
PkrI GCNGC 1 cut(s) 669
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
Ppu21I YACGTR 1 cut(s) 655
PshAI GACNNNNGTC 1 cut(s) 614
Psp124BI GAGCTC 1 cut(s) 692
Psp6I CCWGG 1 cut(s) 732
PspGI CCWGG 1 cut(s) 732
PspN4I GGNNCC 1 cut(s) 746
PspPI GGNCC 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 524
RsaI GTAC 1 cut(s) 710
RsaNI GTAC 1 cut(s) 709
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 1 cut(s) 692
SaqAI TTAA 5 cut(s) 288, 446, 489, 567, 678
SatI GCNGC 1 cut(s) 668
Sau3AI GATC 5 cut(s) 55, 169, 253, 526, 697
Sau96I GGNCC 1 cut(s) 646
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 219, 734
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 1 cut(s) 621
SinI GGWCC 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 287, 578
SmoI CTYRAG 2 cut(s) 287, 578
Sse9I AATT 2 cut(s) 23, 424
SsiI CCGC 2 cut(s) 86, 644
SspMI CTAG 2 cut(s) 111, 501
SstI GAGCTC 1 cut(s) 692
StyD4I CCNGG 2 cut(s) 217, 732
TaaI ACNGT 3 cut(s) 338, 406, 455
TaiI ACGT 5 cut(s) 9, 281, 309, 345, 657
TaqI TCGA 1 cut(s) 618
TaqII GACCGA 1 cut(s) 466
TasI AATT 2 cut(s) 23, 424
TfiI GAWTC 2 cut(s) 245, 313
Tru1I TTAA 5 cut(s) 288, 446, 489, 567, 678
Tru9I TTAA 5 cut(s) 288, 446, 489, 567, 678
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 3 cut(s) 338, 343, 478
TseI GCWGC 1 cut(s) 667
Tsp45I GTSAC 3 cut(s) 338, 343, 478
TspDTI ATGAA 2 cut(s) 54, 122
TspRI CASTG 1 cut(s) 529
Vha464I CTTAAG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 646
XspI CTAG 2 cut(s) 111, 501
ZraI GACGTC 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.