Prupe.1G424000_v2.0.a1

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0002575
Physical Location & Seq
Reverse (-)
36550104 .. 36550716
613 bp
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UTR
Exon/CDS
Intron
Prupe.1G424000.1

Sequence Viewer

Length: 300 bp
ATGGAGGGGGAACTTCAGACCACAAAACATCATCATCAGCCAGCCCTTAACTTTCATGGCAAGGCAAGAACCAGTAGAGCGGCAGCAACTGATCCCGAGAGCCTCTATGCAAGGAATCTTGTCCCTAATGGAACCAAGGTTGACCTCAGCACAATGCTGGAAGAGGCAGTTGATTATGTGAAGTTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATACGTGGATGTACGCTCCTATCGCTTATATCGGAATGGATATTGGTCTCAACCTGCAGAAGATATCTCCACTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

100

Amino Acids

11.08

Weight (kDa)

6.02

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 80
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 86
AfaI GTAC 1 cut(s) 233
AluBI AGCT 3 cut(s) 193, 205, 213
AluI AGCT 3 cut(s) 193, 205, 213
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 86
AlwNI CAGNNNCTG 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 83, 190
AvaI CYCGRG 1 cut(s) 95
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 2 cut(s) 95, 202
BcoDI GTCTC 1 cut(s) 272
BfmI CTRYAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 282
BisI GCNGC 3 cut(s) 81, 84, 191
BlsI GCNGC 3 cut(s) 82, 85, 192
BmeT110I CYCGRG 1 cut(s) 95
BmiI GGNNCC 1 cut(s) 133
Bpu10I CCTNAGC 1 cut(s) 146
BsaAI YACGTR 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 95, 202
BsiHKCI CYCGRG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 107
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 1 cut(s) 95
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 1 cut(s) 80
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 282
BspPI GGATC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 1 cut(s) 91
BssT1I CCWWGG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 156
BstBAI YACGTR 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 234
BstKTI GATC 1 cut(s) 94
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstSFI CTRYAG 1 cut(s) 275
BstV1I GCAGC 2 cut(s) 95, 202
BtsCI GGATG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 89
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 56
CviJI RGCY 6 cut(s) 40, 44, 102, 193, 205, 213
CviKI_1 RGCY 6 cut(s) 40, 44, 102, 193, 205, 213
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 146
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 272
Eco32I GATATC 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 1 cut(s) 59
FaiI YATR 5 cut(s) 57, 108, 177, 249, 298
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 3 cut(s) 81, 84, 191
FokI GGATG 1 cut(s) 241
Fsp4HI GCNGC 3 cut(s) 81, 84, 191
GluI GCNGC 3 cut(s) 81, 84, 191
Hin1II CATG 1 cut(s) 59
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 18, 217, 254
Hpy188III TCNNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 110, 190, 277
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 146
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 1 cut(s) 59
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 2 cut(s) 198, 241
LpnPI CCDG 4 cut(s) 54, 85, 143, 287
Lsp1109I GCAGC 2 cut(s) 95, 202
MaeII ACGT 1 cut(s) 224
MalI GATC 1 cut(s) 93
MbiI CCGCTC 1 cut(s) 80
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 173, 292
MnlI CCTC 3 cut(s) 113, 155, 157
MseI TTAA 2 cut(s) 48, 209
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 133
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 82, 85, 192
Ppu21I YACGTR 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 279
PstNI CAGNNNCTG 1 cut(s) 89
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 48, 209
SatI GCNGC 3 cut(s) 81, 84, 191
Sau3AI GATC 1 cut(s) 91
SetI ASST 7 cut(s) 141, 147, 195, 207, 215, 227, 276
SfcI CTRYAG 1 cut(s) 275
SsiI CCGC 1 cut(s) 80
StyI CCWWGG 1 cut(s) 135
TaiI ACGT 1 cut(s) 227
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 2 cut(s) 48, 209
Tru9I TTAA 2 cut(s) 48, 209
TseI GCWGC 2 cut(s) 83, 190
TspDTI ATGAA 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.