Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007785.1

Orthogroup ID

OG0002575

Physical Location & Seq

Genomic Coordinates Forward (+)

6706 .. 7576

Gene Structure 871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007785.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggagcaaaccggagctattccagagggagaatggatctctcacactcttggtgggatgttcactggtgatcaggaggcagatttcatgatgatccagttgcttgagaattatccaataatttcagacatggaaatcccggatggtttttggcctgctaatgaagaatcaacattgatggacatttcaggcaactatggaagtctagtttattctttagaaacaactaattctcatgtgaacggcagctcacaagagactgatctcgttcccacttcaagcgatccattctataacttgggtggttctcgctcaatgacgttggtaacaaagaacgttaacagcaatgacaattctatgtcgactgacttttgtgctgcggaggcgaaaaacactagtttgtatctcattcaaggagaaagtgatgcgattattgactgcaatgtggaagagcccggcaggtaccagcgtgaagaaccagccagcaatcatggaaatagtaaccccatctccaagagtaactctatgaagagatcgaaaatttcagaaaatttgagtgcatataaaacaaccgcattaactgatcaaatgaataagaggagcagaaagtcaaagaagagctgcaacaccgcagaagatgggaatcatattaatattgtttctcagcttcagccgagtggagggatgagtcggaatgaggctgcagctctcaacttgaatggaaagacgagagctactaggggcactgccaccgatgccctaagtgtctatgcaagggtaatttcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

262

Amino Acids

28.49

Weight (kDa)

4.78

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27740 AT5G43175
fragaria_vesca	FvH4_2g04220 FvH4_2g33230 FvH4_4g05902
malus_domestica	MD05G1098900.v1.1 MD08G1086200.v1.1 MD10G1104900.v1.1 MD15G1071200.v1.1
prunus_persica	Prupe.1G424000_v2.0.a1 Prupe.1G424100_v2.0.a1 Prupe.8G143600_v2.0.a1
pyrus_communis	pycom05g09790
rosa_chinensis	RchiOBHm_Chr6g0253641 RchiOBHm_Chr6g0309431
rosa_laevigata	RLG00000010566 RLG00000014997
rosa_multiflora	Rmu_co8093044.1_g000001 Rmu_co8395731.1_g000001 Rmu_co8495863.1_g000001 Rmu_sc0000331.1_g000011 Rmu_sc0007785.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159410 Rroxscaffold_7G00211740
rosa_rugosa	Rorug05G0545200 Rorug06G0372000
rosa_samantha	Rh4AG076300 Rh4CG081200 Rh6AG060900 Rh6AG485100 Rh6BG054700 Rh6BG494300 Rh6CG054300 Rh6CG499300 Rh6DG051800 Rh6DG485500
rosa_wichuraiana	Rw4G006130 Rw4G006170 Rw6G005410 Rw6G042250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	450
Acc65I	GGTACC	1 cut(s)	462
AccB1I	GGYRCC	1 cut(s)	462
AccI	GTMKAC	1 cut(s)	362
AciI	CCGC	3 cut(s)	380, 573, 630
AclI	AACGTT	1 cut(s)	336
AclWI	GGATC	3 cut(s)	44, 88, 278
AcsI	RAATTY	2 cut(s)	540, 550
AcuI	CTGAAG	1 cut(s)	653
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	680
AgsI	TTSAA	3 cut(s)	279, 413, 718
AhlI	ACTAGT	1 cut(s)	395
AluBI	AGCT	6 cut(s)	17, 249, 621, 667, 707, 734
AluI	AGCT	6 cut(s)	17, 249, 621, 667, 707, 734
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	3 cut(s)	44, 88, 278
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	5 cut(s)	246, 377, 621, 701, 704
ApoI	RAATTY	2 cut(s)	540, 550
AseI	ATTAAT	1 cut(s)	651
Asp718I	GGTACC	1 cut(s)	462
AsuC2I	CCSGG	2 cut(s)	140, 456
AsuHPI	GGTGA	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	746
BaeI	ACNNNNGTAYC	2 cut(s)	454, 487
BanI	GGYRCC	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	456
BbvI	GCAGC	5 cut(s)	258, 364, 608, 688, 716
BccI	CCATC	4 cut(s)	137, 172, 515, 632
BceAI	ACGGC	1 cut(s)	259
BclI	TGATCA	2 cut(s)	70, 583
BcnI	CCSGG	2 cut(s)	140, 456
BcoDI	GTCTC	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	395
BfaI	CTAG	4 cut(s)	206, 396, 738, 787
BfmI	CTRYAG	1 cut(s)	702
BfuAI	ACCTGC	1 cut(s)	450
BisI	GCNGC	5 cut(s)	247, 378, 622, 702, 705
BlsI	GCNGC	5 cut(s)	248, 379, 623, 703, 706
Bme1390I	CCNGG	2 cut(s)	140, 456
BmiI	GGNNCC	1 cut(s)	464
BmrFI	CCNGG	2 cut(s)	140, 456
BmsI	GCATC	2 cut(s)	415, 745
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	2 cut(s)	140, 456
BsaBI	GATNNNNATC	1 cut(s)	642
BsaWI	WCCGGW	1 cut(s)	11
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	680
Bse1I	ACTGG	2 cut(s)	70, 97
Bse3DI	GCAATG	2 cut(s)	352, 448
Bse8I	GATNNNNATC	1 cut(s)	642
BseGI	GGATG	3 cut(s)	63, 148, 690
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	1 cut(s)	680
BseMI	GCAATG	2 cut(s)	352, 448
BseMII	CTCAG	1 cut(s)	677
BseNI	ACTGG	2 cut(s)	70, 97
BseRI	GAGGAG	1 cut(s)	613
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	5 cut(s)	258, 364, 608, 688, 716
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	462
BsiSI	CCGG	3 cut(s)	12, 140, 456
BslI	CCNNNNNNNGG	1 cut(s)	680
BsmAI	GTCTC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	456, 746
Bsp143I	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
BspACI	CCGC	3 cut(s)	380, 573, 630
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	676
BspHI	TCATGA	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	464
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	450
BspPI	GGATC	3 cut(s)	44, 88, 278
BspQI	GCTCTTC	2 cut(s)	444, 611
BspT107I	GGYRCC	1 cut(s)	462
BsrDI	GCAATG	2 cut(s)	352, 448
BsrI	ACTGG	2 cut(s)	70, 97
BssMI	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
Bst6I	CTCTTC	3 cut(s)	444, 524, 611
BstC8I	GCNNGC	2 cut(s)	156, 484
BstDEI	CTNAG	2 cut(s)	663, 761
BstF5I	GGATG	3 cut(s)	63, 148, 690
BstKTI	GATC	7 cut(s)	39, 73, 96, 265, 286, 536, 586
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	383, 755
BstSCI	CCNGG	2 cut(s)	138, 454
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	746
BstV1I	GCAGC	5 cut(s)	258, 364, 608, 688, 716
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	3 cut(s)	63, 148, 690
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	2 cut(s)	63, 744
BveI	ACCTGC	1 cut(s)	450
Cac8I	GCNNGC	2 cut(s)	156, 484
CciI	TCATGA	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	4 cut(s)	88, 130, 236, 491
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	2 cut(s)	663, 761
DpnI	GATC	7 cut(s)	38, 72, 95, 264, 285, 535, 585
DpnII	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
Eam1104I	CTCTTC	3 cut(s)	444, 524, 611
EarI	CTCTTC	3 cut(s)	444, 524, 611
Eco24I	GRGCYC	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	456
FaeI	CATG	4 cut(s)	91, 133, 239, 494
FatI	CATG	4 cut(s)	87, 129, 235, 490
FbaI	TGATCA	2 cut(s)	70, 583
FblI	GTMKAC	1 cut(s)	362
Fnu4HI	GCNGC	5 cut(s)	247, 378, 622, 702, 705
FokI	GGATG	3 cut(s)	70, 155, 697
FriOI	GRGCYC	1 cut(s)	456
Fsp4HI	GCNGC	5 cut(s)	247, 378, 622, 702, 705
FspBI	CTAG	4 cut(s)	206, 396, 738, 787
GluI	GCNGC	5 cut(s)	247, 378, 622, 702, 705
HaeIII	GGCC	1 cut(s)	154
HapII	CCGG	3 cut(s)	12, 140, 456
Hin1II	CATG	4 cut(s)	91, 133, 239, 494
HincII	GTYRAC	2 cut(s)	340, 363
HindII	GTYRAC	2 cut(s)	340, 363
HinfI	GANTC	3 cut(s)	167, 643, 688
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	3 cut(s)	12, 140, 456
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	4 cut(s)	63, 241, 340, 363
Hpy188I	TCNGA	3 cut(s)	127, 547, 693
Hpy188III	TCNNGA	3 cut(s)	23, 74, 88
Hpy8I	GTNNAC	4 cut(s)	63, 241, 340, 363
HpyCH4IV	ACGT	2 cut(s)	320, 336
HpyCH4V	TGCA	5 cut(s)	441, 560, 624, 704, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	383, 755
HpyF3I	CTNAG	2 cut(s)	663, 761
HpySE526I	ACGT	2 cut(s)	320, 336
Hsp92II	CATG	4 cut(s)	91, 133, 239, 494
KpnI	GGTACC	1 cut(s)	466
Ksp22I	TGATCA	2 cut(s)	70, 583
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
LguI	GCTCTTC	2 cut(s)	444, 611
LmnI	GCTCC	3 cut(s)	4, 14, 600
Lsp1109I	GCAGC	5 cut(s)	258, 364, 608, 688, 716
LweI	GCATC	2 cut(s)	415, 745
MaeI	CTAG	4 cut(s)	206, 396, 738, 787
MaeII	ACGT	2 cut(s)	320, 336
MaeIII	GTNAC	3 cut(s)	325, 500, 518
MalI	GATC	7 cut(s)	38, 72, 95, 264, 285, 535, 585
MboI	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
MboII	GAAGA	6 cut(s)	176, 461, 485, 541, 628, 647
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	456, 746
MluCI	AATT	7 cut(s)	109, 120, 229, 352, 540, 550, 780
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	671
MnlI	CCTC	6 cut(s)	19, 70, 376, 591, 674, 691
MseI	TTAA	3 cut(s)	339, 578, 651
MspI	CCGG	3 cut(s)	12, 140, 456
MspR9I	CCNGG	2 cut(s)	140, 456
MwoI	GCNNNNNNNGC	2 cut(s)	383, 755
NciI	CCSGG	2 cut(s)	140, 456
NdeII	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
NlaIII	CATG	4 cut(s)	91, 133, 239, 494
NlaIV	GGNNCC	1 cut(s)	464
NmeAIII	GCCGAG	1 cut(s)	699
PagI	TCATGA	1 cut(s)	87
PciSI	GCTCTTC	2 cut(s)	444, 611
PfeI	GAWTC	2 cut(s)	167, 643
PfoI	TCCNGGA	1 cut(s)	138
PkrI	GCNGC	5 cut(s)	248, 379, 623, 703, 706
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
PshBI	ATTAAT	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	336
PspN4I	GGNNCC	1 cut(s)	464
PstI	CTGCAG	1 cut(s)	706
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	361
SapI	GCTCTTC	2 cut(s)	444, 611
SaqAI	TTAA	3 cut(s)	339, 578, 651
SatI	GCNGC	5 cut(s)	247, 378, 622, 702, 705
Sau3AI	GATC	7 cut(s)	36, 70, 93, 262, 283, 533, 583
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	140, 456
SduI	GDGCHC	2 cut(s)	456, 746
SetI	ASST	9 cut(s)	19, 251, 323, 339, 464, 623, 669, 709, 736
SfaNI	GCATC	2 cut(s)	415, 745
SfcI	CTRYAG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	395
Sse9I	AATT	7 cut(s)	109, 120, 229, 352, 540, 550, 780
SsiI	CCGC	3 cut(s)	380, 573, 630
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	4 cut(s)	206, 396, 738, 787
StyD4I	CCNGG	2 cut(s)	138, 454
TaiI	ACGT	2 cut(s)	323, 339
TaqI	TCGA	2 cut(s)	362, 536
TasI	AATT	7 cut(s)	109, 120, 229, 352, 540, 550, 780
TfiI	GAWTC	2 cut(s)	167, 643
Tru1I	TTAA	3 cut(s)	339, 578, 651
Tru9I	TTAA	3 cut(s)	339, 578, 651
TscAI	CASTG	2 cut(s)	70, 751
TseI	GCWGC	5 cut(s)	246, 377, 621, 701, 704
TspDTI	ATGAA	4 cut(s)	76, 177, 542, 605
TspRI	CASTG	2 cut(s)	70, 751
VspI	ATTAAT	1 cut(s)	651
XapI	RAATTY	2 cut(s)	540, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XmiI	GTMKAC	1 cut(s)	362
XspI	CTAG	4 cut(s)	206, 396, 738, 787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.