Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495863.1

Orthogroup ID

OG0002575

Physical Location & Seq

Genomic Coordinates Forward (+)

898 .. 2326

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495863.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

atggagtctcttggtgtttttgctgagggagatcaatgggagtgcttcagcagattgttctctaacgaagatcaagagctagatttcacaccgcattttcttggtcatgaaggttcatttcctttccaacacaatgagggattcaattttgataccccaaccacccttttccccaatcctgaagctggtgatgaaatgggattgaacaggttcaatcagagcttctttcattctttagactctctcagctctaatatgcactatcttcctcaagaaaataattctggttatagtgctagcagtggcatttttactgccattctgaacccggagaattactactttggtggtaactcttgccataccccaatgagtaatgacatctctacatccgttgatgtttctatgactggtaatactgagagcaattttgggtcattcatcccgtcatttagtgacattgggatggaaggagctgtctgtaacactgaatattccggcagtggcagaaagggcttttcagatgacagtcaaccaccaaaggaactgcaactcaagaggatgcatgatgcggcagcagagaaatccaacactaaagatgcatctgagagtaatccaaagaagaaaccccgtttgttgaaagataaaactaagaagagtaatgcgaggtcaaagaagggccaaaaggctaactcagatctggaggtgaaagatgaagacgagagtaacacaggagtggacagacagagctctagctcttataacagctctgaggatgacaatgcttctcaagaaaccaatggggcaggagaaatttcagaccccaaatcatcatcagcccttaacttgaatggcaagacaagagccaatagagggtctgcaactgatccccagagtctctatgctaggaaacgaagggagagaatcaacgagcgattgagagtcttgcagaatcttgtccctaatggaacaaaggttgacatcagcacaatgctggaagaggcagtccattatgtcaagtttttacagctccagatcaagcttttgagctccgatgacatgtggatgtatgctcctattgcttataacggaatggatatcggtctcgacctgcataagatgtctccacttctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

378

Amino Acids

41.91

Weight (kDa)

5.05

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27740 AT5G43175
fragaria_vesca	FvH4_2g04220 FvH4_2g33230 FvH4_4g05902
malus_domestica	MD05G1098900.v1.1 MD08G1086200.v1.1 MD10G1104900.v1.1 MD15G1071200.v1.1
prunus_persica	Prupe.1G424000_v2.0.a1 Prupe.1G424100_v2.0.a1 Prupe.8G143600_v2.0.a1
pyrus_communis	pycom05g09790
rosa_chinensis	RchiOBHm_Chr6g0253641 RchiOBHm_Chr6g0309431
rosa_laevigata	RLG00000010566 RLG00000014997
rosa_multiflora	Rmu_co8093044.1_g000001 Rmu_co8395731.1_g000001 Rmu_co8495863.1_g000001 Rmu_sc0000331.1_g000011 Rmu_sc0007785.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159410 Rroxscaffold_7G00211740
rosa_rugosa	Rorug05G0545200 Rorug06G0372000
rosa_samantha	Rh4AG076300 Rh4CG081200 Rh6AG060900 Rh6AG485100 Rh6BG054700 Rh6BG494300 Rh6CG054300 Rh6CG499300 Rh6DG051800 Rh6DG485500
rosa_wichuraiana	Rw4G006130 Rw4G006170 Rw6G005410 Rw6G042250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	762, 1086
Acc36I	ACCTGC	1 cut(s)	1119
AciI	CCGC	2 cut(s)	92, 572
AclWI	GGATC	1 cut(s)	881
AcsI	RAATTY	1 cut(s)	813
AcuI	CTGAAG	2 cut(s)	31, 201
AfiI	CCNNNNNNNGG	2 cut(s)	185, 873
AflIII	ACRYGT	1 cut(s)	1059
AgsI	TTSAA	5 cut(s)	145, 205, 214, 640, 850
AleI	CACNNNNGTG	1 cut(s)	734
Alw21I	GWGCWC	2 cut(s)	752, 1052
Alw26I	GTCTC	4 cut(s)	12, 902, 1109, 1128
AlwI	GGATC	1 cut(s)	881
AoxI	GGCC	1 cut(s)	679
ApeKI	GCWGC	1 cut(s)	575
ApoI	RAATTY	1 cut(s)	813
Asp700I	GAANNNNTTC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	679
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	200, 718
AsuNHI	GCTAGC	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	752, 1052
BbsI	GAAGAC	1 cut(s)	723
Bbv12I	GWGCWC	2 cut(s)	752, 1052
BbvCI	CCTCAGC	1 cut(s)	24
BbvI	GCAGC	1 cut(s)	587
BccI	CCATC	1 cut(s)	460
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	4 cut(s)	12, 902, 1109, 1128
BfaI	CTAG	4 cut(s)	80, 297, 753, 906
BfuAI	ACCTGC	1 cut(s)	1119
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	2 cut(s)	573, 576
BlsI	GCNGC	2 cut(s)	574, 577
Bme1390I	CCNGG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	679
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	4 cut(s)	552, 559, 589, 611
BmtI	GCTAGC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	723
BpmI	CTGGAG	2 cut(s)	722, 1016
Bpu10I	CCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	3 cut(s)	255, 539, 774
BpuMI	CCSGG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	1109
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 873
Bse1I	ACTGG	1 cut(s)	415
BseGI	GGATG	6 cut(s)	389, 441, 471, 567, 781, 1071
BseLI	CCNNNNNNNGG	2 cut(s)	185, 873
BseMII	CTCAG	6 cut(s)	15, 259, 411, 597, 708, 762
BseNI	ACTGG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	587
BshFI	GGCC	1 cut(s)	681
BsiHKAI	GWGCWC	2 cut(s)	752, 1052
BsiSI	CCGG	2 cut(s)	329, 498
BslFI	GGGAC	1 cut(s)	944
BslI	CCNNNNNNNGG	2 cut(s)	185, 873
BsmAI	GTCTC	4 cut(s)	12, 902, 1109, 1128
BsmFI	GGGAC	1 cut(s)	944
BsnI	GGCC	1 cut(s)	681
Bso31I	GGTCTC	1 cut(s)	1109
Bsp1286I	GDGCHC	2 cut(s)	752, 1052
Bsp143I	GATC	5 cut(s)	31, 70, 697, 886, 1035
BspACI	CCGC	2 cut(s)	92, 572
BspANI	GGCC	1 cut(s)	681
BspCNI	CTCAG	6 cut(s)	16, 258, 412, 598, 707, 763
BspHI	TCATGA	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	1119
BspOI	GCTAGC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	881
BspTNI	GGTCTC	1 cut(s)	1109
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	5 cut(s)	31, 70, 697, 886, 1035
Bst4CI	ACNGT	1 cut(s)	530
Bst6I	CTCTTC	2 cut(s)	650, 993
BstC8I	GCNNGC	1 cut(s)	298
BstDEI	CTNAG	7 cut(s)	24, 245, 420, 606, 651, 694, 771
BstF5I	GGATG	6 cut(s)	389, 441, 471, 567, 781, 1071
BstKTI	GATC	5 cut(s)	34, 73, 700, 889, 1038
BstMAI	GTCTC	4 cut(s)	12, 902, 1109, 1128
BstMBI	GATC	5 cut(s)	31, 70, 697, 886, 1035
BstMWI	GCNNNNNNNGC	2 cut(s)	513, 1079
BstNSI	RCATGY	1 cut(s)	1063
BstSCI	CCNGG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	587
BstV2I	GAAGAC	1 cut(s)	723
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	1 cut(s)	681
BtsCI	GGATG	6 cut(s)	389, 441, 471, 567, 781, 1071
BtsI	GCAGTG	2 cut(s)	307, 508
BtsIMutI	CAGTG	3 cut(s)	307, 486, 508
BveI	ACCTGC	1 cut(s)	1119
Cac8I	GCNNGC	1 cut(s)	298
CciI	TCATGA	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	679
CviAII	CATG	3 cut(s)	107, 566, 1060
DdeI	CTNAG	7 cut(s)	24, 245, 420, 606, 651, 694, 771
DpnI	GATC	5 cut(s)	33, 72, 699, 888, 1037
DpnII	GATC	5 cut(s)	31, 70, 697, 886, 1035
Eam1104I	CTCTTC	2 cut(s)	650, 993
EarI	CTCTTC	2 cut(s)	650, 993
Ecl136II	GAGCTC	2 cut(s)	750, 1050
Eco24I	GRGCYC	2 cut(s)	752, 1052
Eco31I	GGTCTC	1 cut(s)	1109
Eco32I	GATATC	1 cut(s)	1099
Eco53kI	GAGCTC	2 cut(s)	750, 1050
Eco57I	CTGAAG	2 cut(s)	31, 201
EcoICRI	GAGCTC	2 cut(s)	750, 1050
EcoRV	GATATC	1 cut(s)	1099
EcoT22I	ATGCAT	2 cut(s)	567, 604
EcoT38I	GRGCYC	2 cut(s)	752, 1052
FaeI	CATG	3 cut(s)	110, 569, 1063
FaqI	GGGAC	1 cut(s)	944
FatI	CATG	3 cut(s)	106, 565, 1059
Fnu4HI	GCNGC	2 cut(s)	573, 576
FokI	GGATG	6 cut(s)	376, 428, 478, 574, 788, 1078
FriOI	GRGCYC	2 cut(s)	752, 1052
Fsp4HI	GCNGC	2 cut(s)	573, 576
FspBI	CTAG	4 cut(s)	80, 297, 753, 906
GluI	GCNGC	2 cut(s)	573, 576
GsuI	CTGGAG	2 cut(s)	722, 1016
HaeIII	GGCC	1 cut(s)	681
HapII	CCGG	2 cut(s)	329, 498
Hin1II	CATG	3 cut(s)	110, 569, 1063
HincII	GTYRAC	2 cut(s)	533, 979
HindII	GTYRAC	2 cut(s)	533, 979
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	7 cut(s)	5, 141, 239, 895, 924, 942, 952
HpaII	CCGG	2 cut(s)	329, 498
HphI	GGTGA	2 cut(s)	200, 718
Hpy166II	GTNNAC	3 cut(s)	533, 739, 979
Hpy188I	TCNGA	8 cut(s)	219, 324, 523, 607, 697, 772, 820, 1054
Hpy188III	TCNNGA	9 cut(s)	74, 107, 179, 272, 556, 701, 791, 1033, 1106
Hpy8I	GTNNAC	3 cut(s)	533, 739, 979
HpyAV	CCTTC	4 cut(s)	104, 464, 670, 909
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	7 cut(s)	259, 550, 565, 602, 881, 949, 1114
HpyF10VI	GCNNNNNNNGC	2 cut(s)	513, 1079
HpyF3I	CTNAG	7 cut(s)	24, 245, 420, 606, 651, 694, 771
Hsp92II	CATG	3 cut(s)	110, 569, 1063
Kzo9I	GATC	5 cut(s)	31, 70, 697, 886, 1035
LmnI	GCTCC	4 cut(s)	473, 1035, 1055, 1078
Lsp1109I	GCAGC	1 cut(s)	587
LweI	GCATC	4 cut(s)	552, 559, 589, 611
MaeI	CTAG	4 cut(s)	80, 297, 753, 906
MaeIII	GTNAC	4 cut(s)	350, 455, 482, 725
MalI	GATC	5 cut(s)	33, 72, 699, 888, 1037
MboI	GATC	5 cut(s)	31, 70, 697, 886, 1035
MboII	GAAGA	6 cut(s)	80, 257, 634, 667, 728, 1010
MflI	RGATCY	1 cut(s)	697
MhlI	GDGCHC	2 cut(s)	752, 1052
MluCI	AATT	5 cut(s)	145, 280, 334, 427, 813
MlyI	GAGTC	4 cut(s)	14, 233, 904, 951
MmeI	TCCRAC	2 cut(s)	151, 612
MnlI	CCTC	9 cut(s)	19, 130, 279, 552, 660, 697, 766, 866, 994
Mph1103I	ATGCAT	2 cut(s)	567, 604
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	1 cut(s)	843
MslI	CAYNNNNRTG	4 cut(s)	464, 734, 1064, 1132
MspI	CCGG	2 cut(s)	329, 498
MspR9I	CCNGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	2 cut(s)	513, 1079
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	5 cut(s)	31, 70, 697, 886, 1035
NheI	GCTAGC	1 cut(s)	296
NlaIII	CATG	3 cut(s)	110, 569, 1063
NmuCI	GTSAC	1 cut(s)	455
NsiI	ATGCAT	2 cut(s)	567, 604
NspI	RCATGY	1 cut(s)	1063
OliI	CACNNNNGTG	1 cut(s)	734
PagI	TCATGA	1 cut(s)	106
PciI	ACATGT	1 cut(s)	1059
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	3 cut(s)	141, 924, 952
PkrI	GCNGC	2 cut(s)	574, 577
PleI	GAGTC	4 cut(s)	13, 233, 903, 950
PpsI	GAGTC	4 cut(s)	13, 233, 903, 950
PscI	ACATGT	1 cut(s)	1059
PsiI	TTATAA	2 cut(s)	762, 1086
Psp124BI	GAGCTC	2 cut(s)	752, 1052
PspPI	GGNCC	1 cut(s)	679
PsuI	RGATCY	1 cut(s)	697
RseI	CAYNNNNRTG	4 cut(s)	464, 734, 1064, 1132
SacI	GAGCTC	2 cut(s)	752, 1052
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	2 cut(s)	573, 576
Sau3AI	GATC	5 cut(s)	31, 70, 697, 886, 1035
Sau96I	GGNCC	1 cut(s)	679
SchI	GAGTC	4 cut(s)	14, 233, 904, 951
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	752, 1052
SfaNI	GCATC	4 cut(s)	552, 559, 589, 611
SmiMI	CAYNNNNRTG	4 cut(s)	464, 734, 1064, 1132
SmlI	CTYRAG	3 cut(s)	270, 554, 789
SmoI	CTYRAG	3 cut(s)	270, 554, 789
Sse9I	AATT	5 cut(s)	145, 280, 334, 427, 813
SsiI	CCGC	2 cut(s)	92, 572
SspI	AATATT	1 cut(s)	494
SspMI	CTAG	4 cut(s)	80, 297, 753, 906
SstI	GAGCTC	2 cut(s)	752, 1052
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	1107
TaqII	GACCGA	1 cut(s)	1091
TasI	AATT	5 cut(s)	145, 280, 334, 427, 813
TauI	GCSGC	1 cut(s)	575
TfiI	GAWTC	3 cut(s)	141, 924, 952
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TscAI	CASTG	3 cut(s)	307, 493, 508
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	1 cut(s)	575
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	6 cut(s)	105, 123, 207, 218, 430, 729
TspGWI	ACGGA	2 cut(s)	382, 1104
TspRI	CASTG	3 cut(s)	307, 493, 508
XapI	RAATTY	1 cut(s)	813
XceI	RCATGY	1 cut(s)	1063
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	4 cut(s)	80, 297, 753, 906
Zsp2I	ATGCAT	2 cut(s)	567, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.