Prupe.8G143600_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0002575
Physical Location & Seq
Forward (+)
16047743 .. 16049205
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G143600.1

Sequence Viewer

Length: 1083 bp
ATGTACACTGCTGAGGAGGTAGATTTCATGGCTCAGTTGCTTGGAAATTTTTCATCTTCAAACCATCCAAGTGGCACATCAAGCATGAGAGTACCGGAAGCTTTCTGGCCTGGCGATGAATCACTTACAATGAACATGTCAGGCAACCATGAAGGTTCACATTATTCATCAGAAACTTCTATTTCTGATTGCAGCAATAGGATTCTTTTTCCCACTTCAAGCAATGAAAGCTACTACTTGAGTAGTGATTCTCACCCCATGTTGGTGACAAGCAATAGTTCCATGTCTATTGATTTTGGTTCTGGGGATGGGATCAGAAACCTCAATTCCTATCTGATTCAAGTAAATGATCAATGCTTGAACCAAGAACCAAGTGAAGGAAATGCAGAAGAGTATGGTGGCAACCAGCCTGAAGCTGTGGCTCTGGAGAAGAGGAGATATGATATGGCAGTACAAGAACCAGCCATGGATGATAAAAGTAACACCTCCAAGGCTTCTATGAAAAGAACTCAAAGTGCAGAAAATAATGTTAATGTTCTTTCTCTGATCATAAATTCAATGTGGGTTCAGATGAATAAGAGGAACATAAAGTCAAAGAAGAGCCTGCAGATCATAACTAGCAACAATGAAGAAGATGGCAATGCAGGCCCCAACAGACAGAGCTCAAGTAGTTGCTGCTCAGGAGATGACTCCAATATTGCTTCACATTTCCATGAGAATTCTCAGGAGCTGAGTCCGGGTTGTACTTCGACGTCAAGCTTGAGTCCGAAAGAGGCTAAAGCTCTCAACTTGAGTGGAAAATCAAGAGCTAGAAGGGGGTCAGCCATTGATCCCCAAAGCCTCTATGCAAGGAAAAGAAGAGAGAAAATAAATGAGAGGCTGAGAGTTCTGCAGAACCTTGTCCCCAATGGAACAAAGGTTGATATTAGTACAATGCTTGAGGAAGCTGTCCATTATGTGAAGTTCTTACAACTCCAAATTAAGCTGTTAAGCTCTGATGATATGTGGATGTATGCTCCCATCTGTTACAATGGAATGGACCTGGGACTTGATCTGAAGCTCACCTCACCAAAGCAATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

361

Amino Acids

39.77

Weight (kDa)

5.38

Isoelectric Point (pI)

62.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 755
AclWI GGATC 2 cut(s) 320, 824
AcsI RAATTY 3 cut(s) 46, 553, 718
AcuI CTGAAG 2 cut(s) 432, 1076
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 5 cut(s) 5, 93, 453, 745, 931
AfiI CCNNNNNNNGG 2 cut(s) 262, 377
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 5 cut(s) 60, 219, 341, 361, 558
AjnI CCWGG 2 cut(s) 109, 1041
Alw21I GWGCWC 1 cut(s) 665
AlwI GGATC 2 cut(s) 320, 824
AlwNI CAGNNNCTG 1 cut(s) 730
AoxI GGCC 2 cut(s) 107, 646
ApeKI GCWGC 2 cut(s) 192, 675
ApoI RAATTY 3 cut(s) 46, 553, 718
Asp700I GAANNNNTTC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 647, 1039
AsuC2I CCSGG 1 cut(s) 738
AsuHPI GGTGA 4 cut(s) 245, 277, 1054, 1059
AvaII GGWCC 1 cut(s) 1039
BanII GRGCYC 1 cut(s) 665
Bbv12I GWGCWC 1 cut(s) 665
BbvCI CCTCAGC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 204, 662
BccI CCATC 4 cut(s) 72, 302, 629, 1028
BciT130I CCWGG 2 cut(s) 111, 1043
BclI TGATCA 2 cut(s) 349, 546
BcnI CCSGG 1 cut(s) 738
BfaI CTAG 2 cut(s) 618, 810
BfmI CTRYAG 2 cut(s) 605, 890
BisI GCNGC 2 cut(s) 193, 676
BlsI GCNGC 2 cut(s) 194, 677
Bme1390I CCNGG 3 cut(s) 111, 738, 1043
Bme18I GGWCC 1 cut(s) 1039
BmgT120I GGNCC 2 cut(s) 647, 1039
BmiI GGNNCC 1 cut(s) 649
BmrFI CCNGG 3 cut(s) 111, 738, 1043
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 2 cut(s) 12, 679
BpuEI CTTGAG 5 cut(s) 259, 649, 781, 811, 959
BpuMI CCSGG 1 cut(s) 738
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 3 cut(s) 465, 489, 1042
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 377
Bse3DI GCAATG 2 cut(s) 229, 646
BseBI CCWGG 2 cut(s) 111, 1043
BseDI CCNNGG 3 cut(s) 465, 489, 1042
BseGI GGATG 4 cut(s) 64, 313, 475, 1014
BseLI CCNNNNNNNGG 2 cut(s) 262, 377
BseMI GCAATG 2 cut(s) 229, 646
BseMII CTCAG 5 cut(s) 47, 693, 722, 737, 872
BseRI GAGGAG 2 cut(s) 29, 448
BseXI GCAGC 2 cut(s) 204, 662
BsgI GTGCAG 1 cut(s) 537
BshFI GGCC 2 cut(s) 109, 648
BsiHKAI GWGCWC 1 cut(s) 665
BsiSI CCGG 2 cut(s) 95, 737
BslFI GGGAC 2 cut(s) 887, 1059
BslI CCNNNNNNNGG 2 cut(s) 262, 377
BsmFI GGGAC 2 cut(s) 887, 1059
BsnI GGCC 2 cut(s) 109, 648
Bsp1286I GDGCHC 1 cut(s) 665
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
Bsp19I CCATGG 1 cut(s) 465
BspANI GGCC 2 cut(s) 109, 648
BspCNI CTCAG 6 cut(s) 4, 46, 692, 723, 736, 873
BspLI GGNNCC 1 cut(s) 649
BspMAI CTGCAG 2 cut(s) 609, 894
BspPI GGATC 2 cut(s) 320, 824
BspQI GCTCTTC 1 cut(s) 593
BsrDI GCAATG 2 cut(s) 229, 646
BsrGI TGTACA 1 cut(s) 3
BssECI CCNNGG 3 cut(s) 465, 489, 1042
BssMI GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
BssNI GRCGYC 1 cut(s) 752
BssT1I CCWWGG 2 cut(s) 465, 489
Bst2UI CCWGG 2 cut(s) 111, 1043
Bst6I CTCTTC 4 cut(s) 384, 425, 593, 853
BstACI GRCGYC 1 cut(s) 752
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 605, 646
BstDEI CTNAG 6 cut(s) 12, 33, 679, 723, 731, 881
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 4 cut(s) 64, 313, 475, 1014
BstKTI GATC 6 cut(s) 315, 352, 549, 612, 832, 1054
BstMBI GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
BstMWI GCNNNNNNNGC 3 cut(s) 81, 228, 645
BstNI CCWGG 2 cut(s) 111, 1043
BstNSI RCATGY 1 cut(s) 139
BstSCI CCNGG 3 cut(s) 109, 736, 1041
BstSFI CTRYAG 2 cut(s) 605, 890
BstV1I GCAGC 2 cut(s) 204, 662
BstXI CCANNNNNNTGG 1 cut(s) 71
BsuRI GGCC 2 cut(s) 109, 648
BtgI CCRYGG 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 4 cut(s) 64, 313, 475, 1014
BtsI GCAGTG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 2 cut(s) 605, 646
CaiI CAGNNNCTG 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 647, 1039
Csp6I GTAC 5 cut(s) 4, 92, 452, 744, 930
CspCI CAANNNNNGTGG 2 cut(s) 775, 810
CviAII CATG 8 cut(s) 28, 85, 136, 149, 259, 283, 466, 713
CviQI GTAC 5 cut(s) 4, 92, 452, 744, 930
DdeI CTNAG 6 cut(s) 12, 33, 679, 723, 731, 881
DpnI GATC 6 cut(s) 314, 351, 548, 611, 831, 1053
DpnII GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
Eam1104I CTCTTC 4 cut(s) 384, 425, 593, 853
EarI CTCTTC 4 cut(s) 384, 425, 593, 853
Ecl136II GAGCTC 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 465, 489
Eco24I GRGCYC 1 cut(s) 665
Eco47I GGWCC 1 cut(s) 1039
Eco53kI GAGCTC 1 cut(s) 663
Eco57I CTGAAG 2 cut(s) 432, 1076
EcoICRI GAGCTC 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 647
EcoRI GAATTC 1 cut(s) 718
EcoRII CCWGG 2 cut(s) 109, 1041
EcoT14I CCWWGG 2 cut(s) 465, 489
EcoT38I GRGCYC 1 cut(s) 665
ErhI CCWWGG 2 cut(s) 465, 489
FaeI CATG 8 cut(s) 31, 88, 139, 152, 262, 286, 469, 716
FaqI GGGAC 2 cut(s) 887, 1059
FatI CATG 8 cut(s) 27, 84, 135, 148, 258, 282, 465, 712
FbaI TGATCA 2 cut(s) 349, 546
Fnu4HI GCNGC 2 cut(s) 193, 676
FokI GGATG 4 cut(s) 51, 320, 482, 1021
FriOI GRGCYC 1 cut(s) 665
Fsp4HI GCNGC 2 cut(s) 193, 676
FspBI CTAG 2 cut(s) 618, 810
GluI GCNGC 2 cut(s) 193, 676
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 2 cut(s) 109, 648
HapII CCGG 2 cut(s) 95, 737
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 8 cut(s) 31, 88, 139, 152, 262, 286, 469, 716
HindIII AAGCTT 2 cut(s) 99, 757
HinfI GANTC 7 cut(s) 119, 202, 248, 337, 689, 733, 763
HpaII CCGG 2 cut(s) 95, 737
HphI GGTGA 4 cut(s) 245, 277, 1054, 1059
Hpy166II GTNNAC 2 cut(s) 6, 158
Hpy188I TCNGA 9 cut(s) 172, 187, 317, 336, 546, 570, 768, 997, 1056
Hpy188III TCNNGA 4 cut(s) 425, 681, 725, 804
Hpy8I GTNNAC 2 cut(s) 6, 158
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 3 cut(s) 146, 371, 807
HpyCH4IV ACGT 1 cut(s) 752
HpyCH4V TGCA 7 cut(s) 192, 386, 518, 607, 644, 848, 892
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 228, 645
HpyF3I CTNAG 6 cut(s) 12, 33, 679, 723, 731, 881
HpySE526I ACGT 1 cut(s) 752
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 8 cut(s) 31, 88, 139, 152, 262, 286, 469, 716
Ksp22I TGATCA 2 cut(s) 349, 546
Kzo9I GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
LguI GCTCTTC 1 cut(s) 593
LmnI GCTCC 2 cut(s) 727, 1021
Lsp1109I GCAGC 2 cut(s) 204, 662
MaeI CTAG 2 cut(s) 618, 810
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 3 cut(s) 265, 479, 1025
MalI GATC 6 cut(s) 314, 351, 548, 611, 831, 1053
MboI GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
MboII GAAGA 7 cut(s) 48, 401, 442, 610, 641, 644, 870
MhlI GDGCHC 1 cut(s) 665
MluCI AATT 5 cut(s) 46, 325, 553, 718, 978
MlyI GAGTC 3 cut(s) 683, 742, 772
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 3 cut(s) 531, 981, 989
MslI CAYNNNNRTG 3 cut(s) 69, 263, 711
MspI CCGG 2 cut(s) 95, 737
MspR9I CCNGG 3 cut(s) 111, 738, 1043
MvaI CCWGG 2 cut(s) 111, 1043
MwoI GCNNNNNNNGC 3 cut(s) 81, 228, 645
NciI CCSGG 1 cut(s) 738
NcoI CCATGG 1 cut(s) 465
NdeII GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
NlaIII CATG 8 cut(s) 31, 88, 139, 152, 262, 286, 469, 716
NlaIV GGNNCC 1 cut(s) 649
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 1 cut(s) 139
PciI ACATGT 1 cut(s) 135
PciSI GCTCTTC 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 4 cut(s) 119, 202, 248, 337
PkrI GCNGC 2 cut(s) 194, 677
PleI GAGTC 3 cut(s) 683, 741, 771
PpsI GAGTC 3 cut(s) 683, 741, 771
PscI ACATGT 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 665
Psp6I CCWGG 2 cut(s) 109, 1041
PspGI CCWGG 2 cut(s) 109, 1041
PspN4I GGNNCC 1 cut(s) 649
PspPI GGNCC 2 cut(s) 647, 1039
PstI CTGCAG 2 cut(s) 609, 894
PstNI CAGNNNCTG 1 cut(s) 730
RsaI GTAC 5 cut(s) 5, 93, 453, 745, 931
RsaNI GTAC 5 cut(s) 4, 92, 452, 744, 930
RseI CAYNNNNRTG 3 cut(s) 69, 263, 711
SacI GAGCTC 1 cut(s) 665
SapI GCTCTTC 1 cut(s) 593
SaqAI TTAA 3 cut(s) 531, 981, 989
SatI GCNGC 2 cut(s) 193, 676
Sau3AI GATC 6 cut(s) 312, 349, 546, 609, 829, 1051
Sau96I GGNCC 2 cut(s) 647, 1039
SchI GAGTC 3 cut(s) 683, 742, 772
ScrFI CCNGG 3 cut(s) 111, 738, 1043
SduI GDGCHC 1 cut(s) 665
SfcI CTRYAG 2 cut(s) 605, 890
SinI GGWCC 1 cut(s) 1039
SmiMI CAYNNNNRTG 3 cut(s) 69, 263, 711
SmlI CTYRAG 5 cut(s) 238, 664, 760, 790, 938
SmoI CTYRAG 5 cut(s) 238, 664, 760, 790, 938
Sse9I AATT 5 cut(s) 46, 325, 553, 718, 978
SspI AATATT 1 cut(s) 697
SspMI CTAG 2 cut(s) 618, 810
SstI GAGCTC 1 cut(s) 665
StyD4I CCNGG 3 cut(s) 109, 736, 1041
StyI CCWWGG 2 cut(s) 465, 489
TaiI ACGT 1 cut(s) 755
TaqI TCGA 1 cut(s) 749
TasI AATT 5 cut(s) 46, 325, 553, 718, 978
TatI WGTACW 4 cut(s) 3, 451, 743, 929
TfiI GAWTC 4 cut(s) 119, 202, 248, 337
Tru1I TTAA 3 cut(s) 531, 981, 989
Tru9I TTAA 3 cut(s) 531, 981, 989
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 2 cut(s) 192, 675
Tsp45I GTSAC 1 cut(s) 265
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 1039
XapI RAATTY 3 cut(s) 46, 553, 718
XceI RCATGY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 2 cut(s) 618, 810
ZraI GACGTC 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.