pycom05g09790

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0002575
Physical Location & Seq
Forward (+)
13080843 .. 13081872
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09790.2

Sequence Viewer

Length: 987 bp
ATGGAGGATATTGGAGCTGTTTCAGAGGGAGAATGGACCTCTCTCAGTGGGATGTACACTGCTGAGGAGGTAGATTTCATGTCCCAGTTGCTTGGAAATTCTTCAAACCGGACATCAAGCATGGGAATAATTCCAGAGGCTTTTTGGCCTGGAGGCTACTATGAAGGTGCACTTTATTATTCATCAGAAACTTCTGATTCAAATTCACAAGAGGGTAATTTGAGTGGTGGTACTAGGGCTTTTTACCCCACTTCAAGCAATGAGAGTTACTACTTGAATGAATCTTCTCAACCCATGTTGGCAACAAACAATAATAACATCTCTATGTCTATTGATTTTGGTGAGATCATCGATCAATGCTTGAACCAAGAAACAAGTGAAGGCAATCCAGAAGAGTGTGGCAGAAACCCAGCTGAAGCTGTGGCTCTTGGCAATCAGAAATTTGATATGACTGCTGCACAAGAACAATCCATGGAGGAAATTAACCCCACCAAGAATTCATTGAAAAGATCTCAAGGCTTAGAAAATGTAAGTATATTTTTCTTACCCTTTAGTCAAAAAATTCTTGATTATAGAATGTTACCATTCTTCAAAAGAAATAAAAAAGAGGCAGGAGTTGGTTTATGTGCGCATTTTCTGATAATAAATTCAATGCAGGTTCAAATGAAAAAGATGAACATAAAGGCAAAGAAGAGCCGGCAGGTGACAACTAGCAACAATGAAGAAGACTGTACTACTGCCGGGCTCAACAGACAGAGCTCCAGTTGCTGCTCAGTAGAAGATCAGTCCAATGTTGCCTCACATTCCCATGAGAATTCTCAGGAGCTGAGTGGAGGGGTTAGTGTTACTTCAACTTCAAGCTTGAGTCCAACAGTTGCAGCTCTCAACTTGAGTGGCAAATCAAGAGCTAGAAGGGGGTCAGCCACTGATCCCCAAAGCCTCTATGCAAGGGTGAGTTCCTATGTATACCCTACAAATGTCGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

329

Amino Acids

35.8

Weight (kDa)

4.84

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 691
Acc16I TGCGCA 1 cut(s) 630
Acc36I ACCTGC 2 cut(s) 646, 691
AccI GTMKAC 1 cut(s) 966
AclWI GGATC 1 cut(s) 923
AcsI RAATTY 7 cut(s) 97, 202, 440, 496, 561, 646, 814
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 3 cut(s) 56, 232, 733
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 8 cut(s) 17, 413, 419, 759, 826, 861, 881, 908
AluI AGCT 8 cut(s) 17, 413, 419, 759, 826, 861, 881, 908
Alw21I GWGCWC 2 cut(s) 172, 761
Alw44I GTGCAC 1 cut(s) 168
AlwI GGATC 1 cut(s) 923
AlwNI CAGNNNCTG 3 cut(s) 768, 826, 926
AoxI GGCC 1 cut(s) 146
ApaLI GTGCAC 1 cut(s) 168
ApeKI GCWGC 3 cut(s) 455, 768, 878
ApoI RAATTY 7 cut(s) 97, 202, 440, 496, 561, 646, 814
Asp700I GAANNNNTTC 1 cut(s) 100
AspLEI GCGC 1 cut(s) 631
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 3 cut(s) 353, 715, 964
AvaII GGWCC 1 cut(s) 36
BaeGI GKGCMC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 747, 761
BbsI GAAGAC 1 cut(s) 732
Bbv12I GWGCWC 2 cut(s) 172, 761
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 442, 755, 890
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 742
BfaI CTAG 3 cut(s) 234, 711, 909
BfuAI ACCTGC 2 cut(s) 646, 691
BglII AGATCT 1 cut(s) 509
BisI GCNGC 3 cut(s) 456, 769, 879
BlsI GCNGC 3 cut(s) 457, 770, 880
Bme1390I CCNGG 2 cut(s) 150, 742
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 150, 742
BmrI ACTGGG 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 732
BpmI CTGGAG 2 cut(s) 171, 745
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 3 cut(s) 498, 883, 910
BpuMI CCSGG 1 cut(s) 742
Bsa29I ATCGAT 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 471
BsaWI WCCGGW 1 cut(s) 108
Bse118I RCCGGY 1 cut(s) 696
Bse1I ACTGG 2 cut(s) 85, 762
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 351
BseDI CCNNGG 1 cut(s) 471
BseGI GGATG 1 cut(s) 57
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 5 cut(s) 54, 58, 786, 818, 833
BseNI ACTGG 2 cut(s) 85, 762
BseRI GAGGAG 1 cut(s) 80
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 3 cut(s) 442, 755, 890
BseYI CCCAGC 1 cut(s) 409
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 1 cut(s) 148
BshVI ATCGAT 1 cut(s) 351
BsiHKAI GWGCWC 2 cut(s) 172, 761
BsiSI CCGG 3 cut(s) 109, 697, 741
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 1 cut(s) 148
Bsp1286I GDGCHC 3 cut(s) 172, 747, 761
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 5 cut(s) 345, 352, 509, 781, 928
Bsp19I CCATGG 1 cut(s) 471
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 5 cut(s) 55, 57, 785, 819, 832
BspDI ATCGAT 1 cut(s) 351
BspMI ACCTGC 2 cut(s) 646, 691
BspPI GGATC 1 cut(s) 923
BspQI GCTCTTC 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 696
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 85, 762
BssAI RCCGGY 1 cut(s) 696
BssECI CCNNGG 1 cut(s) 471
BssMI GATC 5 cut(s) 345, 352, 509, 781, 928
BssNAI GTATAC 1 cut(s) 967
BssT1I CCWWGG 1 cut(s) 471
Bst1107I GTATAC 1 cut(s) 967
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 731, 874
Bst6I CTCTTC 2 cut(s) 387, 686
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 698
BstDEI CTNAG 6 cut(s) 44, 63, 520, 772, 819, 827
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 631
BstKTI GATC 5 cut(s) 348, 355, 512, 784, 931
BstMBI GATC 5 cut(s) 345, 352, 509, 781, 928
BstMWI GCNNNNNNNGC 1 cut(s) 765
BstNI CCWGG 1 cut(s) 150
BstSCI CCNGG 2 cut(s) 148, 740
BstSLI GKGCMC 1 cut(s) 172
BstV1I GCAGC 3 cut(s) 442, 755, 890
BstV2I GAAGAC 1 cut(s) 732
BstX2I RGATCY 1 cut(s) 509
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 509
BstZ17I GTATAC 1 cut(s) 967
Bsu15I ATCGAT 1 cut(s) 351
BsuRI GGCC 1 cut(s) 148
BsuTUI ATCGAT 1 cut(s) 351
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 3 cut(s) 52, 57, 924
BveI ACCTGC 2 cut(s) 646, 691
Cac8I GCNNGC 1 cut(s) 698
CaiI CAGNNNCTG 3 cut(s) 768, 826, 926
CfoI GCGC 1 cut(s) 631
Cfr10I RCCGGY 1 cut(s) 696
Cfr13I GGNCC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 351
Csp6I GTAC 3 cut(s) 55, 231, 732
CspCI CAANNNNNGTGG 2 cut(s) 874, 909
CviAII CATG 5 cut(s) 79, 121, 295, 472, 809
CviQI GTAC 3 cut(s) 55, 231, 732
DdeI CTNAG 6 cut(s) 44, 63, 520, 772, 819, 827
DpnI GATC 5 cut(s) 347, 354, 511, 783, 930
DpnII GATC 5 cut(s) 345, 352, 509, 781, 928
Eam1104I CTCTTC 2 cut(s) 387, 686
EarI CTCTTC 2 cut(s) 387, 686
Ecl136II GAGCTC 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 471
Eco24I GRGCYC 2 cut(s) 747, 761
Eco47I GGWCC 1 cut(s) 36
Eco53kI GAGCTC 1 cut(s) 759
Eco57I CTGAAG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 759
EcoRI GAATTC 2 cut(s) 496, 814
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 471
EcoT38I GRGCYC 2 cut(s) 747, 761
ErhI CCWWGG 1 cut(s) 471
FaeI CATG 5 cut(s) 82, 124, 298, 475, 812
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 1 cut(s) 67
FatI CATG 5 cut(s) 78, 120, 294, 471, 808
FblI GTMKAC 1 cut(s) 966
Fnu4HI GCNGC 3 cut(s) 456, 769, 879
FokI GGATG 1 cut(s) 64
FriOI GRGCYC 2 cut(s) 747, 761
Fsp4HI GCNGC 3 cut(s) 456, 769, 879
FspAI RTGCGCAY 1 cut(s) 630
FspBI CTAG 3 cut(s) 234, 711, 909
FspI TGCGCA 1 cut(s) 630
GlaI GCGC 1 cut(s) 630
GluI GCNGC 3 cut(s) 456, 769, 879
GsaI CCCAGC 1 cut(s) 413
GsuI CTGGAG 2 cut(s) 171, 745
HaeIII GGCC 1 cut(s) 148
HapII CCGG 3 cut(s) 109, 697, 741
HhaI GCGC 1 cut(s) 631
Hin1II CATG 5 cut(s) 82, 124, 298, 475, 812
Hin6I GCGC 1 cut(s) 629
HinP1I GCGC 1 cut(s) 629
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 3 cut(s) 197, 281, 865
HpaII CCGG 3 cut(s) 109, 697, 741
HphI GGTGA 3 cut(s) 353, 715, 964
Hpy166II GTNNAC 3 cut(s) 57, 170, 967
Hpy188I TCNGA 5 cut(s) 25, 187, 196, 438, 639
Hpy188III TCNNGA 5 cut(s) 134, 389, 566, 821, 903
Hpy8I GTNNAC 3 cut(s) 57, 170, 967
HpyAV CCTTC 3 cut(s) 158, 374, 906
HpyCH4III ACNGT 2 cut(s) 731, 874
HpyCH4V TGCA 5 cut(s) 170, 458, 655, 878, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 765
HpyF3I CTNAG 6 cut(s) 44, 63, 520, 772, 819, 827
Hsp92II CATG 5 cut(s) 82, 124, 298, 475, 812
HspAI GCGC 1 cut(s) 629
KroI GCCGGC 1 cut(s) 696
KroNI GCCGGC 1 cut(s) 698
Kzo9I GATC 5 cut(s) 345, 352, 509, 781, 928
LguI GCTCTTC 1 cut(s) 686
LmnI GCTCC 3 cut(s) 14, 764, 823
Lsp1109I GCAGC 3 cut(s) 442, 755, 890
MaeI CTAG 3 cut(s) 234, 711, 909
MaeIII GTNAC 4 cut(s) 266, 579, 703, 844
MalI GATC 5 cut(s) 347, 354, 511, 783, 930
MboI GATC 5 cut(s) 345, 352, 509, 781, 928
MboII GAAGA 8 cut(s) 93, 276, 404, 580, 703, 734, 737, 791
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 3 cut(s) 172, 747, 761
MlyI GAGTC 1 cut(s) 874
MmeI TCCRAC 1 cut(s) 893
MroNI GCCGGC 1 cut(s) 696
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 2 cut(s) 483, 985
MslI CAYNNNNRTG 2 cut(s) 323, 807
MspA1I CMGCKG 1 cut(s) 413
MspI CCGG 3 cut(s) 109, 697, 741
MspR9I CCNGG 2 cut(s) 150, 742
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 765
NaeI GCCGGC 1 cut(s) 698
NciI CCSGG 1 cut(s) 742
NcoI CCATGG 1 cut(s) 471
NdeII GATC 5 cut(s) 345, 352, 509, 781, 928
NgoMIV GCCGGC 1 cut(s) 696
NlaIII CATG 5 cut(s) 82, 124, 298, 475, 812
NmuCI GTSAC 1 cut(s) 703
NsbI TGCGCA 1 cut(s) 630
PaqCI CACCTGC 1 cut(s) 691
PciSI GCTCTTC 1 cut(s) 686
PdiI GCCGGC 1 cut(s) 698
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 197, 281
PkrI GCNGC 3 cut(s) 457, 770, 880
PleI GAGTC 1 cut(s) 873
PpsI GAGTC 1 cut(s) 873
Psp124BI GAGCTC 1 cut(s) 761
Psp6I CCWGG 1 cut(s) 148
PspFI CCCAGC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 36
PstNI CAGNNNCTG 3 cut(s) 768, 826, 926
PsuI RGATCY 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 3 cut(s) 56, 232, 733
RsaNI GTAC 3 cut(s) 55, 231, 732
RseI CAYNNNNRTG 2 cut(s) 323, 807
SacI GAGCTC 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 686
SaqAI TTAA 2 cut(s) 483, 985
SatI GCNGC 3 cut(s) 456, 769, 879
Sau3AI GATC 5 cut(s) 345, 352, 509, 781, 928
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 1 cut(s) 874
ScrFI CCNGG 2 cut(s) 150, 742
SduI GDGCHC 3 cut(s) 172, 747, 761
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 2 cut(s) 323, 807
SmlI CTYRAG 3 cut(s) 513, 862, 889
SmoI CTYRAG 3 cut(s) 513, 862, 889
SspMI CTAG 3 cut(s) 234, 711, 909
SstI GAGCTC 1 cut(s) 761
StyD4I CCNGG 2 cut(s) 148, 740
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 2 cut(s) 731, 874
TaqI TCGA 1 cut(s) 351
TatI WGTACW 2 cut(s) 54, 731
TfiI GAWTC 2 cut(s) 197, 281
Tru1I TTAA 2 cut(s) 483, 985
Tru9I TTAA 2 cut(s) 483, 985
TscAI CASTG 3 cut(s) 52, 64, 931
TseFI GTSAC 1 cut(s) 703
TseI GCWGC 3 cut(s) 455, 768, 878
Tsp45I GTSAC 1 cut(s) 703
TspDTI ATGAA 8 cut(s) 67, 171, 177, 294, 489, 680, 689, 735
TspRI CASTG 3 cut(s) 52, 64, 931
VneI GTGCAC 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 7 cut(s) 97, 202, 440, 496, 561, 646, 814
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmiI GTMKAC 1 cut(s) 966
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 3 cut(s) 234, 711, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.