Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002575

Physical Location & Seq

Genomic Coordinates Reverse (-)

36554410 .. 36555781

Gene Structure 1372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G424100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAACTTTGAAATCCCAGCCTCATTTTGCCCCAATATTCCTGAAGCTGAAATGGGATTGAGCAGGGTCAATGAGAGCTTCTTTCAACATCCTTCAGATGCTCTCAACTCTAATGTGCATTATCTTTCTCAGGAGAGTTGTTATGGTAATAACAATCATGGCAGTGCTGGAATTTTTACTGCCATTCTGAACCAGGAAAATTACTACTTCGGTAATTCTTGCCATGTTCCTGTGGCTAATGATATCTCTGCATCTATGGATGTATATATGAATCATCATGATCATGATGGAAAGAGCTTTGGTTCATTCATCCCAACATTTTCTGACATTGTGATGGAAGGAAGTGTCTCTAACAAAGAAGATTCTGGCAGTGACAGATTGGGATTTTCAGATGACAGCCAGCCAGCTGCAATTGCAATTCCAGGAGAGGAATTGCATCTGAAAAGGGTGCATGATGTGGCAGAAGACAAGTCTAACAATGACAAATCTGACAGTAATCCAAAGAAGAAACCACGTCTTTCGAAAGATCTCCACATAATAATGCAGGTACAGAAAACTAAGAAAAATAATGCAAGGTCAAAGAAGGGCGAACAGGCTAACTCAGATGTGAAAGTCAAAGATGAAGAAGAGAGTAACACAGGGGCTGATAGGCAGAGCACTAGTTCTTGCAGCTCTGAGGATGACAATGGTTCTCAGGAGACCAATGGAGGAGAAACTTCAGACCCCAAAACATCATCAGCCCTTAACTTGAATGGCAAGACAAGAGCCAACAGAGGCTCAGCAACTGATCCACAAAGCCTCTATGCAAGGAAAAGAAGAGAGAGAATTAATGAGAGATTGAGAATCTTACAGAACCTTGTCCCTAATGGAACCAAGGTTGACATCAGCACAATGCTGGAAGAGGCAGTTCATTATGTGAAGTTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATATGTGGATGTACGCACCTATTGCCTATAACGGAATGGATATTGGTCTCAGCCTGCAGAAGATGTCTCCACTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

346

Amino Acids

38.17

Weight (kDa)

5.49

Isoelectric Point (pI)

52.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27740 AT5G43175
fragaria_vesca	FvH4_2g04220 FvH4_2g33230 FvH4_4g05902
malus_domestica	MD05G1098900.v1.1 MD08G1086200.v1.1 MD10G1104900.v1.1 MD15G1071200.v1.1
prunus_persica	Prupe.1G424000_v2.0.a1 Prupe.1G424100_v2.0.a1 Prupe.8G143600_v2.0.a1
pyrus_communis	pycom05g09790
rosa_chinensis	RchiOBHm_Chr6g0253641 RchiOBHm_Chr6g0309431
rosa_laevigata	RLG00000010566 RLG00000014997
rosa_multiflora	Rmu_co8093044.1_g000001 Rmu_co8395731.1_g000001 Rmu_co8495863.1_g000001 Rmu_sc0000331.1_g000011 Rmu_sc0007785.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159410 Rroxscaffold_7G00211740
rosa_rugosa	Rorug05G0545200 Rorug06G0372000
rosa_samantha	Rh4AG076300 Rh4CG081200 Rh6AG060900 Rh6AG485100 Rh6BG054700 Rh6BG494300 Rh6CG054300 Rh6CG499300 Rh6DG051800 Rh6DG485500
rosa_wichuraiana	Rw4G006130 Rw4G006170 Rw6G005410 Rw6G042250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AclWI	GGATC	1 cut(s)	782
AcsI	RAATTY	1 cut(s)	171
AcuI	CTGAAG	3 cut(s)	63, 78, 702
AfaI	GTAC	2 cut(s)	549, 971
AgsI	TTSAA	3 cut(s)	11, 86, 751
AhlI	ACTAGT	1 cut(s)	659
AjiI	CACGTC	1 cut(s)	515
AjnI	CCWGG	2 cut(s)	192, 421
AluBI	AGCT	8 cut(s)	47, 78, 297, 407, 672, 931, 943, 951
AluI	AGCT	8 cut(s)	47, 78, 297, 407, 672, 931, 943, 951
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	4 cut(s)	352, 692, 1010, 1029
AlwI	GGATC	1 cut(s)	782
AlwNI	CAGNNNCTG	2 cut(s)	644, 785
ApeKI	GCWGC	3 cut(s)	407, 669, 928
ApoI	RAATTY	1 cut(s)	171
AseI	ATTAAT	1 cut(s)	828
AsuII	TTCGAA	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	3 cut(s)	394, 681, 940
BccI	CCATC	2 cut(s)	281, 328
BciT130I	CCWGG	2 cut(s)	194, 423
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	4 cut(s)	352, 692, 1010, 1029
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	1 cut(s)	1013
BfuAI	ACCTGC	1 cut(s)	535
BglII	AGATCT	1 cut(s)	526
BisI	GCNGC	3 cut(s)	408, 670, 929
BlpI	GCTNAGC	1 cut(s)	778
BlsI	GCNGC	3 cut(s)	409, 671, 930
Bme1390I	CCNGG	2 cut(s)	194, 423
BmgBI	CACGTC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	871
BmrFI	CCNGG	2 cut(s)	194, 423
BmsI	GCATC	3 cut(s)	88, 260, 445
BpiI	GAAGAC	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	778
Bpu14I	TTCGAA	1 cut(s)	521
BsaI	GGTCTC	2 cut(s)	692, 1010
BsaJI	CCNNGG	1 cut(s)	873
BseBI	CCWGG	2 cut(s)	194, 423
BseDI	CCNNGG	1 cut(s)	873
BseGI	GGATG	5 cut(s)	88, 265, 309, 685, 972
BseMII	CTCAG	6 cut(s)	143, 615, 666, 707, 792, 1021
BseRI	GAGGAG	1 cut(s)	723
BseXI	GCAGC	3 cut(s)	394, 681, 940
BseYI	CCCAGC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	845
BsmAI	GTCTC	4 cut(s)	352, 692, 1010, 1029
BsmFI	GGGAC	1 cut(s)	845
Bso31I	GGTCTC	2 cut(s)	692, 1010
Bsp119I	TTCGAA	1 cut(s)	521
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	280, 526, 787
Bsp1720I	GCTNAGC	1 cut(s)	778
BspCNI	CTCAG	6 cut(s)	142, 614, 667, 706, 791, 1020
BspHI	TCATGA	2 cut(s)	277, 283
BspLI	GGNNCC	1 cut(s)	871
BspMAI	CTGCAG	1 cut(s)	1017
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	1 cut(s)	782
BspT104I	TTCGAA	1 cut(s)	521
BspTNI	GGTCTC	2 cut(s)	692, 1010
BssECI	CCNNGG	1 cut(s)	873
BssMI	GATC	3 cut(s)	280, 526, 787
BssT1I	CCWWGG	1 cut(s)	873
Bst2UI	CCWGG	2 cut(s)	194, 423
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	3 cut(s)	621, 811, 894
BstAPI	GCANNNNNTGC	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	401, 405, 1013
BstDEI	CTNAG	7 cut(s)	129, 558, 601, 675, 693, 778, 1007
BstF5I	GGATG	5 cut(s)	88, 265, 309, 685, 972
BstKTI	GATC	3 cut(s)	283, 529, 790
BstMAI	GTCTC	4 cut(s)	352, 692, 1010, 1029
BstMBI	GATC	3 cut(s)	280, 526, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 980
BstNI	CCWGG	2 cut(s)	194, 423
BstSCI	CCNGG	2 cut(s)	192, 421
BstSFI	CTRYAG	1 cut(s)	1013
BstV1I	GCAGC	3 cut(s)	394, 681, 940
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	526
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	5 cut(s)	88, 265, 309, 685, 972
BtsI	GCAGTG	2 cut(s)	169, 376
BtsIMutI	CAGTG	2 cut(s)	169, 376
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	3 cut(s)	401, 405, 1013
CaiI	CAGNNNCTG	2 cut(s)	644, 785
CciI	TCATGA	2 cut(s)	277, 283
Csp6I	GTAC	2 cut(s)	548, 970
CviAII	CATG	5 cut(s)	158, 224, 278, 284, 452
CviQI	GTAC	2 cut(s)	548, 970
DdeI	CTNAG	7 cut(s)	129, 558, 601, 675, 693, 778, 1007
DpnI	GATC	3 cut(s)	282, 528, 789
DpnII	GATC	3 cut(s)	280, 526, 787
Eam1104I	CTCTTC	3 cut(s)	621, 811, 894
EarI	CTCTTC	3 cut(s)	621, 811, 894
Eco130I	CCWWGG	1 cut(s)	873
Eco31I	GGTCTC	2 cut(s)	692, 1010
Eco32I	GATATC	1 cut(s)	244
Eco57I	CTGAAG	3 cut(s)	63, 78, 702
EcoRII	CCWGG	2 cut(s)	192, 421
EcoRV	GATATC	1 cut(s)	244
EcoT14I	CCWWGG	1 cut(s)	873
ErhI	CCWWGG	1 cut(s)	873
FaeI	CATG	5 cut(s)	161, 227, 281, 287, 455
FaqI	GGGAC	1 cut(s)	845
FatI	CATG	5 cut(s)	157, 223, 277, 283, 451
FbaI	TGATCA	1 cut(s)	280
Fnu4HI	GCNGC	3 cut(s)	408, 670, 929
FokI	GGATG	5 cut(s)	75, 272, 296, 692, 979
Fsp4HI	GCNGC	3 cut(s)	408, 670, 929
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	3 cut(s)	408, 670, 929
GsaI	CCCAGC	1 cut(s)	20
Hin1II	CATG	5 cut(s)	161, 227, 281, 287, 455
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	3 cut(s)	271, 362, 843
Hpy166II	GTNNAC	1 cut(s)	880
Hpy188III	TCNNGA	5 cut(s)	41, 131, 278, 284, 695
Hpy8I	GTNNAC	1 cut(s)	880
HpyAV	CCTTC	3 cut(s)	102, 332, 577
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4IV	ACGT	1 cut(s)	514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 980
HpyF3I	CTNAG	7 cut(s)	129, 558, 601, 675, 693, 778, 1007
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	5 cut(s)	161, 227, 281, 287, 455
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	280, 526, 787
LmnI	GCTCC	1 cut(s)	936
Lsp1109I	GCAGC	3 cut(s)	394, 681, 940
LweI	GCATC	3 cut(s)	88, 260, 445
MaeI	CTAG	1 cut(s)	660
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	371, 632
MalI	GATC	3 cut(s)	282, 528, 789
MboI	GATC	3 cut(s)	280, 526, 787
MboII	GAAGA	8 cut(s)	371, 476, 517, 635, 638, 828, 911, 1030
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	7 cut(s)	171, 199, 214, 411, 417, 431, 825
MnlI	CCTC	7 cut(s)	31, 421, 670, 701, 767, 809, 895
MseI	TTAA	3 cut(s)	744, 828, 947
MslI	CAYNNNNRTG	5 cut(s)	162, 282, 332, 539, 1033
MspA1I	CMGCKG	1 cut(s)	407
MspR9I	CCNGG	2 cut(s)	194, 423
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	194, 423
MwoI	GCNNNNNNNGC	2 cut(s)	413, 980
NdeII	GATC	3 cut(s)	280, 526, 787
NlaIII	CATG	5 cut(s)	161, 227, 281, 287, 455
NlaIV	GGNNCC	1 cut(s)	871
NmuCI	GTSAC	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	521
PagI	TCATGA	2 cut(s)	277, 283
PfeI	GAWTC	3 cut(s)	271, 362, 843
PfoI	TCCNGGA	1 cut(s)	421
PkrI	GCNGC	3 cut(s)	409, 671, 930
PshBI	ATTAAT	1 cut(s)	828
Psp6I	CCWGG	2 cut(s)	192, 421
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	192, 421
PspN4I	GGNNCC	1 cut(s)	871
PstI	CTGCAG	1 cut(s)	1017
PstNI	CAGNNNCTG	2 cut(s)	644, 785
PsuI	RGATCY	1 cut(s)	526
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	2 cut(s)	549, 971
RsaNI	GTAC	2 cut(s)	548, 970
RseI	CAYNNNNRTG	5 cut(s)	162, 282, 332, 539, 1033
SaqAI	TTAA	3 cut(s)	744, 828, 947
SatI	GCNGC	3 cut(s)	408, 670, 929
Sau3AI	GATC	3 cut(s)	280, 526, 787
ScrFI	CCNGG	2 cut(s)	194, 423
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	3 cut(s)	88, 260, 445
SfcI	CTRYAG	1 cut(s)	1013
SfuI	TTCGAA	1 cut(s)	521
SmiMI	CAYNNNNRTG	5 cut(s)	162, 282, 332, 539, 1033
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	7 cut(s)	171, 199, 214, 411, 417, 431, 825
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	2 cut(s)	192, 421
StyI	CCWWGG	1 cut(s)	873
TaaI	ACNGT	1 cut(s)	494
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	521
TasI	AATT	7 cut(s)	171, 199, 214, 411, 417, 431, 825
TfiI	GAWTC	3 cut(s)	271, 362, 843
Tru1I	TTAA	3 cut(s)	744, 828, 947
Tru9I	TTAA	3 cut(s)	744, 828, 947
TscAI	CASTG	2 cut(s)	169, 376
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	3 cut(s)	407, 669, 928
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	6 cut(s)	17, 284, 294, 298, 636, 899
TspGWI	ACGGA	1 cut(s)	1005
TspRI	CASTG	2 cut(s)	169, 376
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	1 cut(s)	171
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.