Rw4G006130

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002575
Physical Location & Seq
Forward (+)
12417980 .. 12436325
18346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006130.1

Sequence Viewer

Length: 1161 bp
ATGGAGCAAACCGGAGCTATTCCAGAGGGAGAATGGATCTCTCACACTCTTGGTGGGATGTTCACTGGTGATCAGGAGGCAGATTTCATGATGATCCAGTTGCTTGAGAATTATCCAATAATTTCAGACGTGGAAATCCCGGATGGTTTTTGGCCTGGTAATGAAGAATCAACATTGATGGACATTTCAGGCAACTATGGAAGTCTAGTTTATTCTTTAGAAACAACTAATTCTCATGTGAACGGCAGCTCACAAGAGACTGATCTCGTTCCCACTTCAAGCGATCCATTCTACAACTTGGGTGGTTCTCGCTCAATGACGTTGGTAATAAAGAACGTTAACAGCAATGACAATTCTATGTCGACTGACTTTTGTGCTGCGGAGGCGAAAAACACTAGTTTGTATCTCATTCAAGGAGAAAGTGATGCGATTATTGACTGCAATGTGGAAGAGCCCGGCAGGTACCAGCGTGAAGAACCAGCCAGCAATCATGGAAATAGTAACCCCATCTCCAAGAGTAACTCTATGAAGAGATCGAAAGTTTCAGAAAATTTGAGTGCATATAAAACAACCGCATTAACTGATCAAATGAATAAGAGGAGCAGAAAGTCAAAGAAGAGCAGCAACACCGCAGAAGATGGGAATCATATTAATATTGTTTCTCAGCTTCAGCCGAGTGGAGGGATGAGTCGGAATGAGGCTGCAGCTCTCAACTTGAATGGAAAGACGAGAGCTACTAGGGGGACTGCCACCGATGCCCTAAGTGTCTATGCAAGGTTAATTGAGATCCATTTTATGTTGATTAGGGGTTTTGTTGCATCAACATATTTTTTGGGCTTATTATATCATGCAGATCGAAGAAGAGAGAGAATAAACGAGAGGCTCAAAGTCCTGCAAAACCTTGTGCCCAATGGAACAAAGGTAGGGCAGAATTTTGATATTAGCACAATGCTTGAGGAAGCTGTCAATATTTATGTGAAGTTCTTGCAACTCCAAATCAAGAAAGAAGTCGATGACTTGGAGTGGGAGGATGGTTGCATTTGCAATATTAGGAAATTGGCAATAAATCTGAATTTGAAATTGGAATCAAAGAAGGCCATTTCTTGTTTCAGTGCGGTTGCCGGAATTGGTGACTTGAGAGTTATAGACCAGGAGGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

386

Amino Acids

42.68

Weight (kDa)

5.12

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 450
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 362
AciI CCGC 4 cut(s) 380, 573, 630, 1115
AclI AACGTT 1 cut(s) 336
AclWI GGATC 4 cut(s) 44, 88, 278, 781
AcsI RAATTY 3 cut(s) 550, 931, 1072
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 1 cut(s) 680
AgsI TTSAA 4 cut(s) 279, 413, 718, 1078
AhlI ACTAGT 1 cut(s) 395
AjiI CACGTC 1 cut(s) 130
AjnI CCWGG 2 cut(s) 154, 1149
AjuI GAANNNNNNNTTGG 2 cut(s) 1064, 1096
AluBI AGCT 6 cut(s) 17, 249, 667, 707, 734, 962
AluI AGCT 6 cut(s) 17, 249, 667, 707, 734, 962
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 4 cut(s) 44, 88, 278, 781
AoxI GGCC 2 cut(s) 152, 1095
ApeKI GCWGC 5 cut(s) 246, 377, 621, 701, 704
ApoI RAATTY 3 cut(s) 550, 931, 1072
AseI ATTAAT 1 cut(s) 651
Asp718I GGTACC 1 cut(s) 462
AsuC2I CCSGG 2 cut(s) 140, 456
AsuHPI GGTGA 2 cut(s) 80, 1142
BaeGI GKGCMC 1 cut(s) 909
BaeI ACNNNNGTAYC 2 cut(s) 454, 487
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 456
BbvI GCAGC 5 cut(s) 258, 364, 633, 688, 716
BccI CCATC 5 cut(s) 137, 172, 515, 632, 1025
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 156, 1151
BclI TGATCA 2 cut(s) 70, 583
BcnI CCSGG 2 cut(s) 140, 456
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 206, 396, 738
BfmI CTRYAG 1 cut(s) 702
BfuAI ACCTGC 1 cut(s) 450
BisI GCNGC 5 cut(s) 247, 378, 622, 702, 705
BlsI GCNGC 5 cut(s) 248, 379, 623, 703, 706
Bme1390I CCNGG 4 cut(s) 140, 156, 456, 1151
BmgBI CACGTC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 464
BmrFI CCNGG 4 cut(s) 140, 156, 456, 1151
BmsI GCATC 3 cut(s) 415, 745, 827
BpuEI CTTGAG 3 cut(s) 125, 974, 1156
BpuMI CCSGG 2 cut(s) 140, 456
BsaBI GATNNNNATC 1 cut(s) 642
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 680
Bse1I ACTGG 2 cut(s) 70, 97
Bse3DI GCAATG 2 cut(s) 352, 448
Bse8I GATNNNNATC 1 cut(s) 642
BseBI CCWGG 2 cut(s) 156, 1151
BseGI GGATG 4 cut(s) 63, 148, 690, 1036
BseJI GATNNNNATC 1 cut(s) 642
BseLI CCNNNNNNNGG 1 cut(s) 680
BseMI GCAATG 2 cut(s) 352, 448
BseMII CTCAG 1 cut(s) 677
BseNI ACTGG 2 cut(s) 70, 97
BseRI GAGGAG 1 cut(s) 613
BseSI GKGCMC 1 cut(s) 909
BseXI GCAGC 5 cut(s) 258, 364, 633, 688, 716
BshFI GGCC 2 cut(s) 154, 1097
BshNI GGYRCC 1 cut(s) 462
BsiSI CCGG 4 cut(s) 12, 140, 456, 1122
BslFI GGGAC 1 cut(s) 757
BslI CCNNNNNNNGG 1 cut(s) 680
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 757
BsnI GGCC 2 cut(s) 154, 1097
Bsp1286I GDGCHC 2 cut(s) 456, 909
Bsp143I GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
BspACI CCGC 4 cut(s) 380, 573, 630, 1115
BspANI GGCC 2 cut(s) 154, 1097
BspCNI CTCAG 1 cut(s) 676
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 464
BspMAI CTGCAG 1 cut(s) 706
BspMI ACCTGC 1 cut(s) 450
BspPI GGATC 4 cut(s) 44, 88, 278, 781
BspQI GCTCTTC 2 cut(s) 444, 611
BspT107I GGYRCC 1 cut(s) 462
BsrDI GCAATG 2 cut(s) 352, 448
BsrI ACTGG 2 cut(s) 70, 97
BssMI GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
Bst2UI CCWGG 2 cut(s) 156, 1151
Bst6I CTCTTC 4 cut(s) 444, 524, 611, 856
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 2 cut(s) 663, 761
BstF5I GGATG 4 cut(s) 63, 148, 690, 1036
BstKTI GATC 9 cut(s) 39, 73, 96, 265, 286, 536, 586, 789, 856
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
BstMWI GCNNNNNNNGC 2 cut(s) 383, 755
BstNI CCWGG 2 cut(s) 156, 1151
BstSCI CCNGG 4 cut(s) 138, 154, 454, 1149
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 1 cut(s) 909
BstV1I GCAGC 5 cut(s) 258, 364, 633, 688, 716
BstX2I RGATCY 2 cut(s) 36, 786
BstYI RGATCY 2 cut(s) 36, 786
BsuRI GGCC 2 cut(s) 154, 1097
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 4 cut(s) 63, 148, 690, 1036
BtsIMutI CAGTG 2 cut(s) 63, 1117
BveI ACCTGC 1 cut(s) 450
Cac8I GCNNGC 1 cut(s) 484
CciI TCATGA 1 cut(s) 87
Csp6I GTAC 1 cut(s) 463
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 4 cut(s) 88, 236, 491, 848
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 2 cut(s) 663, 761
DpnI GATC 9 cut(s) 38, 72, 95, 264, 285, 535, 585, 788, 855
DpnII GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
Eam1104I CTCTTC 4 cut(s) 444, 524, 611, 856
EarI CTCTTC 4 cut(s) 444, 524, 611, 856
Eco24I GRGCYC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 653
EcoRII CCWGG 2 cut(s) 154, 1149
EcoT38I GRGCYC 1 cut(s) 456
FaeI CATG 4 cut(s) 91, 239, 494, 851
FaqI GGGAC 1 cut(s) 757
FatI CATG 4 cut(s) 87, 235, 490, 847
FbaI TGATCA 2 cut(s) 70, 583
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 5 cut(s) 247, 378, 622, 702, 705
FokI GGATG 4 cut(s) 70, 155, 697, 1043
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 5 cut(s) 247, 378, 622, 702, 705
FspBI CTAG 3 cut(s) 206, 396, 738
GluI GCNGC 5 cut(s) 247, 378, 622, 702, 705
HaeIII GGCC 2 cut(s) 154, 1097
HapII CCGG 4 cut(s) 12, 140, 456, 1122
Hin1II CATG 4 cut(s) 91, 239, 494, 851
HincII GTYRAC 2 cut(s) 340, 363
HindII GTYRAC 2 cut(s) 340, 363
HinfI GANTC 4 cut(s) 167, 643, 688, 1085
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 4 cut(s) 12, 140, 456, 1122
HphI GGTGA 2 cut(s) 80, 1142
Hpy166II GTNNAC 4 cut(s) 63, 241, 340, 363
Hpy188I TCNGA 4 cut(s) 127, 547, 693, 1071
Hpy188III TCNNGA 4 cut(s) 23, 74, 88, 1000
Hpy8I GTNNAC 4 cut(s) 63, 241, 340, 363
HpyAV CCTTC 1 cut(s) 1087
HpyCH4IV ACGT 3 cut(s) 129, 320, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 755
HpyF3I CTNAG 2 cut(s) 663, 761
HpySE526I ACGT 3 cut(s) 129, 320, 336
Hsp92II CATG 4 cut(s) 91, 239, 494, 851
KpnI GGTACC 1 cut(s) 466
Ksp22I TGATCA 2 cut(s) 70, 583
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
LguI GCTCTTC 2 cut(s) 444, 611
LmnI GCTCC 3 cut(s) 4, 14, 600
Lsp1109I GCAGC 5 cut(s) 258, 364, 633, 688, 716
LweI GCATC 3 cut(s) 415, 745, 827
MaeI CTAG 3 cut(s) 206, 396, 738
MaeII ACGT 3 cut(s) 129, 320, 336
MaeIII GTNAC 3 cut(s) 500, 518, 1130
MalI GATC 9 cut(s) 38, 72, 95, 264, 285, 535, 585, 788, 855
MboI GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
MboII GAAGA 8 cut(s) 176, 461, 485, 541, 628, 647, 870, 873
MflI RGATCY 2 cut(s) 36, 786
MhlI GDGCHC 2 cut(s) 456, 909
MlyI GAGTC 1 cut(s) 697
MmeI TCCRAC 1 cut(s) 671
MseI TTAA 4 cut(s) 339, 578, 651, 779
MspI CCGG 4 cut(s) 12, 140, 456, 1122
MspR9I CCNGG 4 cut(s) 140, 156, 456, 1151
MvaI CCWGG 2 cut(s) 156, 1151
MwoI GCNNNNNNNGC 2 cut(s) 383, 755
NciI CCSGG 2 cut(s) 140, 456
NdeII GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
NlaIII CATG 4 cut(s) 91, 239, 494, 851
NlaIV GGNNCC 1 cut(s) 464
NmeAIII GCCGAG 1 cut(s) 699
NmuCI GTSAC 1 cut(s) 1130
PagI TCATGA 1 cut(s) 87
PciSI GCTCTTC 2 cut(s) 444, 611
PfeI GAWTC 3 cut(s) 167, 643, 1085
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 5 cut(s) 248, 379, 623, 703, 706
PleI GAGTC 1 cut(s) 696
PpsI GAGTC 1 cut(s) 696
PshBI ATTAAT 1 cut(s) 651
Psp1406I AACGTT 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 154, 1149
PspGI CCWGG 2 cut(s) 154, 1149
PspN4I GGNNCC 1 cut(s) 464
PstI CTGCAG 1 cut(s) 706
PsuI RGATCY 2 cut(s) 36, 786
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SalI GTCGAC 1 cut(s) 361
SapI GCTCTTC 2 cut(s) 444, 611
SaqAI TTAA 4 cut(s) 339, 578, 651, 779
SatI GCNGC 5 cut(s) 247, 378, 622, 702, 705
Sau3AI GATC 9 cut(s) 36, 70, 93, 262, 283, 533, 583, 786, 853
SchI GAGTC 1 cut(s) 697
ScrFI CCNGG 4 cut(s) 140, 156, 456, 1151
SduI GDGCHC 2 cut(s) 456, 909
SfaNI GCATC 3 cut(s) 415, 745, 827
SfcI CTRYAG 1 cut(s) 702
SmlI CTYRAG 3 cut(s) 104, 953, 1135
SmoI CTYRAG 3 cut(s) 104, 953, 1135
SpeI ACTAGT 1 cut(s) 395
SsiI CCGC 4 cut(s) 380, 573, 630, 1115
SspI AATATT 3 cut(s) 655, 970, 1048
SspMI CTAG 3 cut(s) 206, 396, 738
StyD4I CCNGG 4 cut(s) 138, 154, 454, 1149
TaiI ACGT 3 cut(s) 132, 323, 339
TaqI TCGA 4 cut(s) 362, 536, 856, 1011
TfiI GAWTC 3 cut(s) 167, 643, 1085
Tru1I TTAA 4 cut(s) 339, 578, 651, 779
Tru9I TTAA 4 cut(s) 339, 578, 651, 779
TscAI CASTG 2 cut(s) 70, 1117
TseFI GTSAC 1 cut(s) 1130
TseI GCWGC 5 cut(s) 246, 377, 621, 701, 704
Tsp45I GTSAC 1 cut(s) 1130
TspDTI ATGAA 4 cut(s) 76, 177, 542, 605
TspRI CASTG 2 cut(s) 70, 1117
VspI ATTAAT 1 cut(s) 651
XapI RAATTY 3 cut(s) 550, 931, 1072
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 3 cut(s) 206, 396, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.