Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002575

Physical Location & Seq

Genomic Coordinates Forward (+)

17334121 .. 17335234

Gene Structure 1114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G43175.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAATGAAGCTTTTGTAGATGGTGAATTGGAGTCTCTTTTGGGGATGTTCAACTTTGATCAATGTTCATCTAACGAATCGAGCTTTTGCAATGCTCCAAATGAGACTGATGTTTTCTCTTCTGATGATTTCTTCCCATTTGGTACAATTCTGCAAAGTAACTATGCGGCCGTTCTTGATGGTTCCAACCACCAAACGAACCGAAATGTCGACTCAAGACAAGATCTGTTGAAACCAAGGAAGAAGCAAAAGTTAAGCTCGGAAAGCAATTTGGTTACCGAGCCTAAGACTGCTTGGAGAGATGGTCAAAGCCTAAGCAGTTATAATAGTTCAGATGATGAAAAGGCTTTAGGTTTAGTGTCTAATACATCAAAAAGCCTAAAACGCAAAGCGAAAGCCAACAGAGGGATAGCTTCCGATCCTCAGAGCCTATACGCTAGGAAACGAAGAGAAAGGATAAACGATAGGCTAAAGACATTGCAGAGCCTAGTTCCTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGATGCTGTCCATTACGTGAAGTTCCTGCAGCTTCAAATCAAGCTCTTGAGTTCAGAAGATCTATGGATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTTTGTCTCGGCTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

223

Amino Acids

25.08

Weight (kDa)

6.52

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	148 - 188	1.2e-09	Helix-loop-helix DNA-binding domain
bHLH_LHW	PF23176	150 - 188	2.5e-07	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27740 AT5G43175
fragaria_vesca	FvH4_2g04220 FvH4_2g33230 FvH4_4g05902
malus_domestica	MD05G1098900.v1.1 MD08G1086200.v1.1 MD10G1104900.v1.1 MD15G1071200.v1.1
prunus_persica	Prupe.1G424000_v2.0.a1 Prupe.1G424100_v2.0.a1 Prupe.8G143600_v2.0.a1
pyrus_communis	pycom05g09790
rosa_chinensis	RchiOBHm_Chr6g0253641 RchiOBHm_Chr6g0309431
rosa_laevigata	RLG00000010566 RLG00000014997
rosa_multiflora	Rmu_co8093044.1_g000001 Rmu_co8395731.1_g000001 Rmu_co8495863.1_g000001 Rmu_sc0000331.1_g000011 Rmu_sc0007785.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159410 Rroxscaffold_7G00211740
rosa_rugosa	Rorug05G0545200 Rorug06G0372000
rosa_samantha	Rh4AG076300 Rh4CG081200 Rh6AG060900 Rh6AG485100 Rh6BG054700 Rh6BG494300 Rh6CG054300 Rh6CG499300 Rh6DG051800 Rh6DG485500
rosa_wichuraiana	Rw4G006130 Rw4G006170 Rw6G005410 Rw6G042250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	416
AcoI	YGGCCR	1 cut(s)	171
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	3 cut(s)	55, 235, 569
AluBI	AGCT	6 cut(s)	14, 87, 261, 416, 565, 577
AluI	AGCT	6 cut(s)	14, 87, 261, 416, 565, 577
Alw26I	GTCTC	3 cut(s)	42, 101, 663
AlwI	GGATC	1 cut(s)	416
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	562
AsuHPI	GGTGA	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	3 cut(s)	17, 176, 299
BceAI	ACGGC	1 cut(s)	158
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	42, 101, 663
BfaI	CTAG	2 cut(s)	441, 491
BfmI	CTRYAG	1 cut(s)	560
BglII	AGATCT	2 cut(s)	226, 592
BisI	GCNGC	2 cut(s)	171, 563
BlsI	GCNGC	2 cut(s)	172, 564
BmiI	GGNNCC	1 cut(s)	187
BmsI	GCATC	1 cut(s)	526
BoxI	GACNNNNGTC	1 cut(s)	509
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	202, 601
BsaAI	YACGTR	1 cut(s)	550
BsaJI	CCNNGG	1 cut(s)	239
BsaXI	ACNNNNNCTCC	2 cut(s)	292, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse3DI	GCAATG	2 cut(s)	100, 479
BseDI	CCNNGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	54, 606
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMI	GCAATG	2 cut(s)	100, 479
BseMII	CTCAG	1 cut(s)	440
BseX3I	CGGCCG	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	574
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	173
BsiEI	CGRYCG	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	517, 651
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	3 cut(s)	42, 101, 663
BsmFI	GGGAC	2 cut(s)	517, 651
BsnI	GGCC	1 cut(s)	173
Bsp143I	GATC	4 cut(s)	61, 226, 421, 592
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	439
BspLI	GGNNCC	1 cut(s)	187
BspMAI	CTGCAG	1 cut(s)	564
BspPI	GGATC	1 cut(s)	416
BsrDI	GCAATG	2 cut(s)	100, 479
BssECI	CCNNGG	1 cut(s)	239
BssMI	GATC	4 cut(s)	61, 226, 421, 592
BssT1I	CCWWGG	1 cut(s)	239
Bst6I	CTCTTC	2 cut(s)	127, 445
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstBAI	YACGTR	1 cut(s)	550
BstDEI	CTNAG	3 cut(s)	288, 317, 426
BstEII	GGTNACC	1 cut(s)	277
BstF5I	GGATG	2 cut(s)	54, 606
BstKTI	GATC	4 cut(s)	64, 229, 424, 595
BstMAI	GTCTC	3 cut(s)	42, 101, 663
BstMBI	GATC	4 cut(s)	61, 226, 421, 592
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	267, 387, 614
BstPAI	GACNNNNGTC	1 cut(s)	509
BstPI	GGTNACC	1 cut(s)	277
BstSFI	CTRYAG	1 cut(s)	560
BstV1I	GCAGC	1 cut(s)	574
BstX2I	RGATCY	2 cut(s)	226, 592
BstYI	RGATCY	2 cut(s)	226, 592
BstZI	CGGCCG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	54, 606
Csp6I	GTAC	1 cut(s)	147
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	288, 317, 426
DpnI	GATC	4 cut(s)	63, 228, 423, 594
DpnII	GATC	4 cut(s)	61, 226, 421, 592
EaeI	YGGCCR	1 cut(s)	171
EagI	CGGCCG	1 cut(s)	171
Eam1104I	CTCTTC	2 cut(s)	127, 445
EarI	CTCTTC	2 cut(s)	127, 445
EclXI	CGGCCG	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	239
Eco52I	CGGCCG	1 cut(s)	171
Eco91I	GGTNACC	1 cut(s)	277
EcoO65I	GGTNACC	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	239
ErhI	CCWWGG	1 cut(s)	239
FaiI	YATR	7 cut(s)	168, 327, 436, 518, 598, 606, 635
FaqI	GGGAC	2 cut(s)	517, 651
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	171, 563
FokI	GGATG	2 cut(s)	61, 613
Fsp4HI	GCNGC	2 cut(s)	171, 563
FspBI	CTAG	2 cut(s)	441, 491
GluI	GCNGC	2 cut(s)	171, 563
HaeIII	GGCC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	3 cut(s)	35, 80, 215
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	7 cut(s)	127, 265, 337, 421, 429, 589, 630
Hpy188III	TCNNGA	3 cut(s)	179, 219, 580
Hpy8I	GTNNAC	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	5 cut(s)	93, 157, 484, 562, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	267, 387, 614
HpyF3I	CTNAG	3 cut(s)	288, 317, 426
HpySE526I	ACGT	1 cut(s)	549
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	61, 226, 421, 592
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	2 cut(s)	515, 572
Lsp1109I	GCAGC	1 cut(s)	574
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	2 cut(s)	441, 491
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	161, 277
MalI	GATC	4 cut(s)	63, 228, 423, 594
MboI	GATC	4 cut(s)	61, 226, 421, 592
MboII	GAAGA	6 cut(s)	114, 127, 256, 462, 545, 602
MflI	RGATCY	2 cut(s)	226, 592
MluCI	AATT	3 cut(s)	29, 150, 271
MlyI	GAGTC	2 cut(s)	44, 209
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	3 cut(s)	401, 435, 621
MseI	TTAA	2 cut(s)	257, 670
MwoI	GCNNNNNNNGC	3 cut(s)	267, 387, 614
NdeII	GATC	4 cut(s)	61, 226, 421, 592
NlaIV	GGNNCC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	172, 564
PleI	GAGTC	2 cut(s)	43, 209
PpsI	GAGTC	2 cut(s)	43, 209
Ppu21I	YACGTR	1 cut(s)	550
PshAI	GACNNNNGTC	1 cut(s)	509
PsiI	TTATAA	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	564
PsuI	RGATCY	2 cut(s)	226, 592
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	257, 670
SatI	GCNGC	2 cut(s)	171, 563
Sau3AI	GATC	4 cut(s)	61, 226, 421, 592
SchI	GAGTC	2 cut(s)	44, 209
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	560
SmlI	CTYRAG	2 cut(s)	217, 580
SmoI	CTYRAG	2 cut(s)	217, 580
Sse9I	AATT	3 cut(s)	29, 150, 271
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	2 cut(s)	441, 491
StyI	CCWWGG	1 cut(s)	239
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	3 cut(s)	83, 213, 513
TasI	AATT	3 cut(s)	29, 150, 271
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	257, 670
Tru9I	TTAA	2 cut(s)	257, 670
TseI	GCWGC	1 cut(s)	562
TspDTI	ATGAA	3 cut(s)	24, 60, 357
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	441, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.