Rw4G006170

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002575
Physical Location & Seq
Forward (+)
12583206 .. 12588064
4859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G006170.1

Sequence Viewer

Length: 879 bp
ATGGAGCAAACCGGAGCTATTCCAGAGGGAGAATGGATCTCTCACTCTCTTGGTGGGATGTTCAGTGGTGATCAGGAGGCAGATTTCATAATGATCCAGTTGCTTGAGAATTATCCAATAATTTCAGACATGGAAATCCCGGATGGTTTTTGGCCTGGTAATGAAGAATCAACATTGATGGACATTTCAGGCAACTATGGAAGTCTAGTTTATTCTTTAGAAACAACTAATTCTCATGTGAACGGCAGCTCACAAGAGACTGATCTCGTTCCCACTTCAAGCGATCCATTCTATAACTTGGGTGGTTCTCGCTCAATGACGTTCGTAACAAAGAACGTTAACAGCAATGACAATTCTATGTCTACTGACTTTTGTGCTGCGGAGGCGAAAAACACTAGTTTGTATCTCATTCAAGGAGAAAGTGATGCGATTATTGACTGCAATGATCAAATGAATAAGAGGAGCAGAAAGTCAAAGACGAGCTGCAACACCGCAGAAGATGGGAATCATATTAATATTGTTTCTCAGCTTCAGCCGAGTGGAGGGATGAGTCGGAATGAGGCTGCAGCTCTCAACTTGAATGGAAAGACGAGAGCTACTAGGGGGCCTGCCACCGATGCCCAAAGTGTCTATGCAAGGAGAAGAAGAGAGAGAATAAACGAGAGGCTCAAAGTCCTGCAAAACCTTGTGCCCAATGGAACAAAGGTTGATATTATCACAATGCTTGAGGAGGCTGTCAATATTTATGTGAAGTTCTTGCAACTCCAAATCAACGGATTCCGGCGAAAGTTGACAGGATTCTGGCCGCCGGTGACCGGGCTCCGGCGAACTCCCCTATGGTTTCTCTCTCTTCCATTCTCTCTCTCTCTCTCTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

292

Amino Acids

32.35

Weight (kDa)

5.12

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 213 - 254 3.1e-07 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 362
AciI CCGC 3 cut(s) 380, 492, 806
AclI AACGTT 1 cut(s) 336
AclWI GGATC 3 cut(s) 44, 88, 278
AcoI YGGCCR 1 cut(s) 803
AcuI CTGAAG 1 cut(s) 515
AfiI CCNNNNNNNGG 3 cut(s) 542, 815, 822
AgsI TTSAA 3 cut(s) 279, 413, 580
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 6 cut(s) 17, 249, 483, 529, 569, 596
AluI AGCT 6 cut(s) 17, 249, 483, 529, 569, 596
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 3 cut(s) 44, 88, 278
AoxI GGCC 3 cut(s) 152, 605, 803
ApeKI GCWGC 5 cut(s) 246, 377, 483, 563, 566
AseI ATTAAT 1 cut(s) 513
AspS9I GGNCC 1 cut(s) 605
AsuC2I CCSGG 2 cut(s) 140, 817
AsuHPI GGTGA 2 cut(s) 80, 823
BaeGI GKGCMC 1 cut(s) 693
BanII GRGCYC 1 cut(s) 822
BbvI GCAGC 5 cut(s) 258, 364, 470, 550, 578
BccI CCATC 3 cut(s) 137, 172, 494
BceAI ACGGC 1 cut(s) 259
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 2 cut(s) 70, 445
BcnI CCSGG 2 cut(s) 140, 817
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 206, 396, 600
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 6 cut(s) 247, 378, 484, 564, 567, 806
BlsI GCNGC 6 cut(s) 248, 379, 485, 565, 568, 807
Bme1390I CCNGG 3 cut(s) 140, 156, 817
BmgT120I GGNCC 1 cut(s) 605
BmiI GGNNCC 2 cut(s) 606, 821
BmrFI CCNGG 3 cut(s) 140, 156, 817
BmsI GCATC 2 cut(s) 415, 607
BpuEI CTTGAG 2 cut(s) 125, 746
BpuMI CCSGG 2 cut(s) 140, 817
BsaBI GATNNNNATC 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 11
Bsc4I CCNNNNNNNGG 3 cut(s) 542, 815, 822
Bse118I RCCGGY 1 cut(s) 808
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 2 cut(s) 352, 448
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 1 cut(s) 156
BseGI GGATG 3 cut(s) 63, 148, 552
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 542, 815, 822
BseMI GCAATG 2 cut(s) 352, 448
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 475, 743
BseSI GKGCMC 1 cut(s) 693
BseXI GCAGC 5 cut(s) 258, 364, 470, 550, 578
BshFI GGCC 3 cut(s) 154, 607, 805
BsiSI CCGG 6 cut(s) 12, 140, 781, 809, 816, 823
BslI CCNNNNNNNGG 3 cut(s) 542, 815, 822
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 3 cut(s) 154, 607, 805
Bsp1286I GDGCHC 2 cut(s) 693, 822
Bsp143I GATC 6 cut(s) 36, 70, 93, 262, 283, 445
BspACI CCGC 3 cut(s) 380, 492, 806
BspANI GGCC 3 cut(s) 154, 607, 805
BspCNI CTCAG 1 cut(s) 538
BspLI GGNNCC 2 cut(s) 606, 821
BspMAI CTGCAG 1 cut(s) 568
BspPI GGATC 3 cut(s) 44, 88, 278
BsrDI GCAATG 2 cut(s) 352, 448
BsrFI RCCGGY 1 cut(s) 808
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 808
BssMI GATC 6 cut(s) 36, 70, 93, 262, 283, 445
Bst2UI CCWGG 1 cut(s) 156
Bst6I CTCTTC 2 cut(s) 640, 855
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 1 cut(s) 525
BstEII GGTNACC 1 cut(s) 811
BstF5I GGATG 3 cut(s) 63, 148, 552
BstKTI GATC 6 cut(s) 39, 73, 96, 265, 286, 448
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 6 cut(s) 36, 70, 93, 262, 283, 445
BstMWI GCNNNNNNNGC 2 cut(s) 383, 617
BstNI CCWGG 1 cut(s) 156
BstPI GGTNACC 1 cut(s) 811
BstSCI CCNGG 3 cut(s) 138, 154, 815
BstSFI CTRYAG 1 cut(s) 564
BstSLI GKGCMC 1 cut(s) 693
BstV1I GCAGC 5 cut(s) 258, 364, 470, 550, 578
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 3 cut(s) 154, 607, 805
BtsCI GGATG 3 cut(s) 63, 148, 552
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 609
Cfr10I RCCGGY 1 cut(s) 808
Cfr13I GGNCC 1 cut(s) 605
CviAII CATG 2 cut(s) 130, 236
DdeI CTNAG 1 cut(s) 525
DpnI GATC 6 cut(s) 38, 72, 95, 264, 285, 447
DpnII GATC 6 cut(s) 36, 70, 93, 262, 283, 445
EaeI YGGCCR 1 cut(s) 803
Eam1104I CTCTTC 2 cut(s) 640, 855
EarI CTCTTC 2 cut(s) 640, 855
Eco24I GRGCYC 1 cut(s) 822
Eco57I CTGAAG 1 cut(s) 515
Eco91I GGTNACC 1 cut(s) 811
EcoO109I RGGNCCY 1 cut(s) 605
EcoO65I GGTNACC 1 cut(s) 811
EcoRII CCWGG 1 cut(s) 154
EcoT38I GRGCYC 1 cut(s) 822
FaeI CATG 2 cut(s) 133, 239
FatI CATG 2 cut(s) 129, 235
FbaI TGATCA 2 cut(s) 70, 445
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 6 cut(s) 247, 378, 484, 564, 567, 806
FokI GGATG 3 cut(s) 70, 155, 559
FriOI GRGCYC 1 cut(s) 822
Fsp4HI GCNGC 6 cut(s) 247, 378, 484, 564, 567, 806
FspBI CTAG 3 cut(s) 206, 396, 600
GluI GCNGC 6 cut(s) 247, 378, 484, 564, 567, 806
HaeIII GGCC 3 cut(s) 154, 607, 805
HapII CCGG 6 cut(s) 12, 140, 781, 809, 816, 823
Hin1II CATG 2 cut(s) 133, 239
HincII GTYRAC 2 cut(s) 340, 792
HindII GTYRAC 2 cut(s) 340, 792
HinfI GANTC 5 cut(s) 167, 505, 550, 777, 798
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 6 cut(s) 12, 140, 781, 809, 816, 823
HphI GGTGA 2 cut(s) 80, 823
Hpy166II GTNNAC 4 cut(s) 241, 340, 363, 792
Hpy188I TCNGA 2 cut(s) 127, 555
Hpy188III TCNNGA 2 cut(s) 23, 74
Hpy8I GTNNAC 4 cut(s) 241, 340, 363, 792
HpyCH4IV ACGT 2 cut(s) 320, 336
HpyCH4V TGCA 6 cut(s) 441, 486, 566, 635, 679, 760
HpyF10VI GCNNNNNNNGC 2 cut(s) 383, 617
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 2 cut(s) 320, 336
Hsp92II CATG 2 cut(s) 133, 239
Ksp22I TGATCA 2 cut(s) 70, 445
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 6 cut(s) 36, 70, 93, 262, 283, 445
LmnI GCTCC 4 cut(s) 4, 14, 462, 825
Lsp1109I GCAGC 5 cut(s) 258, 364, 470, 550, 578
LweI GCATC 2 cut(s) 415, 607
MaeI CTAG 3 cut(s) 206, 396, 600
MaeII ACGT 2 cut(s) 320, 336
MaeIII GTNAC 2 cut(s) 325, 811
MalI GATC 6 cut(s) 38, 72, 95, 264, 285, 447
MboI GATC 6 cut(s) 36, 70, 93, 262, 283, 445
MboII GAAGA 5 cut(s) 176, 509, 654, 657, 842
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 2 cut(s) 693, 822
MluCI AATT 4 cut(s) 109, 120, 229, 352
MlyI GAGTC 1 cut(s) 559
MmeI TCCRAC 1 cut(s) 533
MnlI CCTC 9 cut(s) 19, 70, 376, 453, 536, 553, 657, 721, 724
MseI TTAA 2 cut(s) 339, 513
MspI CCGG 6 cut(s) 12, 140, 781, 809, 816, 823
MspR9I CCNGG 3 cut(s) 140, 156, 817
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 2 cut(s) 383, 617
NciI CCSGG 2 cut(s) 140, 817
NdeII GATC 6 cut(s) 36, 70, 93, 262, 283, 445
NlaIII CATG 2 cut(s) 133, 239
NlaIV GGNNCC 2 cut(s) 606, 821
NmeAIII GCCGAG 1 cut(s) 561
NmuCI GTSAC 1 cut(s) 811
PfeI GAWTC 4 cut(s) 167, 505, 777, 798
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 6 cut(s) 248, 379, 485, 565, 568, 807
PleI GAGTC 1 cut(s) 558
PpsI GAGTC 1 cut(s) 558
PshBI ATTAAT 1 cut(s) 513
Psp1406I AACGTT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 154
PspEI GGTNACC 1 cut(s) 811
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 606, 821
PspPI GGNCC 1 cut(s) 605
PstI CTGCAG 1 cut(s) 568
PsuI RGATCY 1 cut(s) 36
SaqAI TTAA 2 cut(s) 339, 513
SatI GCNGC 6 cut(s) 247, 378, 484, 564, 567, 806
Sau3AI GATC 6 cut(s) 36, 70, 93, 262, 283, 445
Sau96I GGNCC 1 cut(s) 605
SchI GAGTC 1 cut(s) 559
ScrFI CCNGG 3 cut(s) 140, 156, 817
SduI GDGCHC 2 cut(s) 693, 822
SfaNI GCATC 2 cut(s) 415, 607
SfcI CTRYAG 1 cut(s) 564
SgrAI CRCCGGYG 1 cut(s) 808
SmlI CTYRAG 2 cut(s) 104, 725
SmoI CTYRAG 2 cut(s) 104, 725
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 4 cut(s) 109, 120, 229, 352
SsiI CCGC 3 cut(s) 380, 492, 806
SspI AATATT 2 cut(s) 517, 742
SspMI CTAG 3 cut(s) 206, 396, 600
StyD4I CCNGG 3 cut(s) 138, 154, 815
TaiI ACGT 2 cut(s) 323, 339
TasI AATT 4 cut(s) 109, 120, 229, 352
TauI GCSGC 1 cut(s) 808
TfiI GAWTC 4 cut(s) 167, 505, 777, 798
Tru1I TTAA 2 cut(s) 339, 513
Tru9I TTAA 2 cut(s) 339, 513
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 5 cut(s) 246, 377, 483, 563, 566
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 3 cut(s) 76, 177, 467
TspGWI ACGGA 1 cut(s) 789
TspRI CASTG 1 cut(s) 70
VspI ATTAAT 1 cut(s) 513
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 3 cut(s) 206, 396, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.