Rroxscaffold_7G00211740

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002575
Physical Location & Seq
Reverse (-)
62162273 .. 62162809
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211740.1

Sequence Viewer

Length: 537 bp
ATGGAGTATGCTGGAGCTGTTTCGGAAGGAGAATGGAGCTCATTGAGTGGGATGTACACTGCTGAGGAAGCGGATTTCATGGCCCAGTTGCTTGAAAACTGTCCACTTTCAAGCTTGCCAGGCATGGAAGTCCCAGATGCTTTCTGGCAAGGCAATGAAGAATCAACATTGCACATGTCAGGCTACTATGAAGGTTCGCATTGTTCTTTAGAAACTACTAATTCTAATTTCATCGCTTCAAGCAACGAAAGCTACTACTTGAGTGATTCTCACCAAATGTTGGCAATAAACAACAATAGCAATAGCTCTATGTCGATTGATTTTGGTATCGGGGATGTGAAAACCATCAATACCTATCTTATTGAAGGAGATGAACGTGATAAATGCTCAAACCGAGAAACAAGTAAAGGCAACATCGAAGAGTCTGGTGGGAGCAGGCCTGAAGCTGTAAATCTTGAGAAGAGGAGATCTCAAAGTAGCCTCTCCAAGATTAACTCCATGAAAAGATCTCAAAGTTCAGACAATGTGAGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

178

Amino Acids

19.53

Weight (kDa)

4.44

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AciI CCGC 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 2 cut(s) 56, 532
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 4 cut(s) 95, 111, 240, 365
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 6 cut(s) 17, 39, 114, 252, 306, 446
AluI AGCT 6 cut(s) 17, 39, 114, 252, 306, 446
Alw21I GWGCWC 1 cut(s) 41
AoxI GGCC 2 cut(s) 81, 437
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 263
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 41
BbvCI CCTCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 120
BglII AGATCT 2 cut(s) 467, 506
Bme1390I CCNGG 1 cut(s) 120
BmgT120I GGNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 79
BplI GAGNNNNNCTC 4 cut(s) 253, 285, 454, 486
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 2 cut(s) 280, 476
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 85
Bse3DI GCAATG 2 cut(s) 160, 167
BseBI CCWGG 1 cut(s) 120
BseGI GGATG 2 cut(s) 57, 340
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 2 cut(s) 160, 167
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 478
BshFI GGCC 2 cut(s) 83, 439
BsiHKAI GWGCWC 1 cut(s) 41
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 2 cut(s) 83, 439
Bsp1286I GDGCHC 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 2 cut(s) 467, 506
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 83, 439
BspCNI CTCAG 1 cut(s) 55
BsrDI GCAATG 2 cut(s) 160, 167
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 1 cut(s) 85
BssMI GATC 2 cut(s) 467, 506
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 2 cut(s) 414, 455
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 116, 437
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 57, 340
BstKTI GATC 2 cut(s) 470, 509
BstMBI GATC 2 cut(s) 467, 506
BstMWI GCNNNNNNNGC 3 cut(s) 68, 120, 249
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 118
BstX2I RGATCY 2 cut(s) 467, 506
BstYI RGATCY 2 cut(s) 467, 506
BsuRI GGCC 2 cut(s) 83, 439
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 57, 340
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 116, 437
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 55, 531
CviAII CATG 4 cut(s) 79, 124, 175, 499
CviQI GTAC 2 cut(s) 55, 531
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 469, 508
DpnII GATC 2 cut(s) 467, 506
Eam1104I CTCTTC 2 cut(s) 414, 455
EarI CTCTTC 2 cut(s) 414, 455
Ecl136II GAGCTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 4 cut(s) 82, 127, 178, 502
FaiI YATR 8 cut(s) 9, 80, 125, 176, 189, 311, 500, 535
FaqI GGGAC 1 cut(s) 116
FatI CATG 4 cut(s) 78, 123, 174, 498
FokI GGATG 2 cut(s) 64, 347
FriOI GRGCYC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 83, 439
Hin1II CATG 4 cut(s) 82, 127, 178, 502
HindIII AAGCTT 1 cut(s) 112
HinfI GANTC 3 cut(s) 161, 266, 422
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 2 cut(s) 57, 104
Hpy188I TCNGA 2 cut(s) 25, 520
Hpy188III TCNNGA 1 cut(s) 455
Hpy8I GTNNAC 2 cut(s) 57, 104
HpyAV CCTTC 3 cut(s) 20, 185, 359
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 120, 249
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 4 cut(s) 82, 127, 178, 502
Kzo9I GATC 2 cut(s) 467, 506
LmnI GCTCC 3 cut(s) 14, 36, 432
LpnPI CCDG 9 cut(s) 98, 105, 130, 132, 147, 165, 411, 421, 453
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 376
MalI GATC 2 cut(s) 469, 508
MboI GATC 2 cut(s) 467, 506
MboII GAAGA 3 cut(s) 170, 431, 472
MflI RGATCY 2 cut(s) 467, 506
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 2 cut(s) 220, 226
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 3 cut(s) 58, 456, 491
MseI TTAA 1 cut(s) 492
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 68, 120, 249
NdeII GATC 2 cut(s) 467, 506
NlaIII CATG 4 cut(s) 82, 127, 178, 502
NspI RCATGY 1 cut(s) 178
PceI AGGCCT 1 cut(s) 439
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 2 cut(s) 161, 266
PflMI CCANNNNNTGG 1 cut(s) 280
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspPI GGNCC 1 cut(s) 82
PsuI RGATCY 2 cut(s) 467, 506
RsaI GTAC 2 cut(s) 56, 532
RsaNI GTAC 2 cut(s) 55, 531
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 492
Sau3AI GATC 2 cut(s) 467, 506
Sau96I GGNCC 1 cut(s) 82
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 1 cut(s) 41
SetI ASST 9 cut(s) 19, 41, 116, 196, 254, 308, 356, 379, 448
SfaNI GCATC 1 cut(s) 127
SmlI CTYRAG 2 cut(s) 259, 455
SmoI CTYRAG 2 cut(s) 259, 455
Sse9I AATT 2 cut(s) 220, 226
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 1 cut(s) 71
SstI GAGCTC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 118
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 379
TaqI TCGA 2 cut(s) 314, 417
TasI AATT 2 cut(s) 220, 226
TatI WGTACW 2 cut(s) 54, 530
TfiI GAWTC 2 cut(s) 161, 266
Tru1I TTAA 1 cut(s) 492
Tru9I TTAA 1 cut(s) 492
TscAI CASTG 1 cut(s) 64
TspDTI ATGAA 6 cut(s) 67, 171, 204, 220, 387, 515
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 280
XceI RCATGY 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.