FvH4_2g33230

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002575
Physical Location & Seq
Reverse (-)
24977091 .. 24978810
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33230.t1

Sequence Viewer

Length: 1134 bp
ATGGAGTCTCTTGGTGTTTTTGCTGAGGGGGATCAATGGGAGTGTTTCAGCAGATTGTTCTCTAACGAAGATCAAGAGCTCGATTTCACTCCACATTTTCTTGGTCATGAAGGTTCATCATTTCCTTTCCAGCACAATGAGGGATTCAATTTTGAAACCCAAACCATTCTTTGCCCTGATCCTGAAGCTGGTGATGAAATGGGATTGACCAGGTTCAATCACAGCTTCTTTCATTCTTTAGACACTGTCAACTCCAATATGCACTATCTTCCTCAAGAAGATAGTTCCGGTTATACTGCTAGCAGTGGCATTTTTACTGCCAGTCTGAACCCAGAGAATTACTACTTTGGTGGTAACTCTTGTTATACCCCAATGAGTAATGACATGTCTACATCCATTGATGTTTCTATGACTGGGAATGTTGATGGCAATGTTGGGTCATTCATCCCGGCATTTAGTGACACTGGCAATGTCTGTAACACTGGAGATTCCGGCAGTGGTAGAATGGGCATTTCCAATGACAGTCAAGCACCAAAGGAACTGCACCTTAAGAGGATGCATGATGCTGCAGAAGAGAAATCCAACACTGAAAATGCATCTGAGAGTAACCCGAAAAAGAGACCCCGTTTGTCGAAAGAGAAAACTAAGAAGAACAATGTGAGGCCAAAGAAGAGCCAAAAGGCCAGCTCTGATGCGAAGGTGATGAAAGATGAAAACGAGAGTAACGCAGCAGTGGATCGACAGAGCTCTAGCTCTTATAACAGCTCTGAGGATGACAATGCTTCTCAGGAGACAAATGGAGCAGGAGAAGTTTCAGACCCCAAATCATCATCAGCCCTTAACTTGAATGGCAAGACAAGAGCCAATAGAGGATCTGCAACTGATCCCCAGAGCCTCTATGCTAGGAAACGCAGGGAGAGAATCAACGAGCGATTGAGAGTCTTGCAGAATCTTGTCCCTAATGGAACAAAGGTTGACATCAGCACAATGCTGGAAGAGGCAGTCCATTATGTCAAGTTTTTACAGCTCCAGATCAAGCTTCTGAGCTCCGATGATATGTGGATGTATGCTCCTATTGCTTATAACGGAATGGATATCGGTCTCGATCTGCACAAGATGTCTCCACTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

378

Amino Acids

41.69

Weight (kDa)

5.09

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 302 - 342 2.4e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 303 - 349 7.3e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 759, 1083
AccI GTMKAC 1 cut(s) 389
AclWI GGATC 5 cut(s) 39, 173, 744, 878, 880
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 188
AflII CTTAAG 1 cut(s) 548
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 4 cut(s) 148, 155, 217, 847
AjnI CCWGG 1 cut(s) 209
Alw21I GWGCWC 3 cut(s) 81, 749, 1049
Alw26I GTCTC 5 cut(s) 12, 613, 785, 1106, 1125
AlwI GGATC 5 cut(s) 39, 173, 744, 878, 880
AoxI GGCC 2 cut(s) 662, 681
ApeKI GCWGC 2 cut(s) 566, 728
AsuC2I CCSGG 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 203, 712
AsuNHI GCTAGC 1 cut(s) 299
BanII GRGCYC 3 cut(s) 81, 749, 1049
Bbv12I GWGCWC 3 cut(s) 81, 749, 1049
BbvCI CCTCAGC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 553, 740
BccI CCATC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 211
BcnI CCSGG 1 cut(s) 449
BcoDI GTCTC 5 cut(s) 12, 613, 785, 1106, 1125
BfaI CTAG 3 cut(s) 300, 750, 903
BfmI CTRYAG 1 cut(s) 567
BfrI CTTAAG 1 cut(s) 548
BisI GCNGC 2 cut(s) 567, 729
BlsI GCNGC 2 cut(s) 568, 730
Bme1390I CCNGG 2 cut(s) 211, 449
BmrFI CCNGG 2 cut(s) 211, 449
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 4 cut(s) 546, 553, 605, 682
BmtI GCTAGC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 423
BpmI CTGGAG 2 cut(s) 504, 1013
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 258
BpuMI CCSGG 1 cut(s) 449
BsaI GGTCTC 2 cut(s) 613, 1106
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse1I ACTGG 4 cut(s) 321, 418, 469, 487
Bse3DI GCAATG 2 cut(s) 436, 475
BseBI CCWGG 1 cut(s) 211
BseGI GGATG 5 cut(s) 392, 444, 561, 778, 1068
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 2 cut(s) 436, 475
BseMII CTCAG 5 cut(s) 15, 591, 759, 800, 1034
BseNI ACTGG 4 cut(s) 321, 418, 469, 487
BseXI GCAGC 2 cut(s) 553, 740
BsgI GTGCAG 2 cut(s) 527, 1094
BshFI GGCC 2 cut(s) 664, 683
BsiHKAI GWGCWC 3 cut(s) 81, 749, 1049
BsiSI CCGG 3 cut(s) 288, 449, 492
BslFI GGGAC 1 cut(s) 941
BslI CCNNNNNNNGG 1 cut(s) 188
BsmAI GTCTC 5 cut(s) 12, 613, 785, 1106, 1125
BsmFI GGGAC 1 cut(s) 941
BsnI GGCC 2 cut(s) 664, 683
Bso31I GGTCTC 2 cut(s) 613, 1106
Bsp1286I GDGCHC 3 cut(s) 81, 749, 1049
Bsp143I GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
BspANI GGCC 2 cut(s) 664, 683
BspCNI CTCAG 5 cut(s) 16, 592, 760, 799, 1035
BspHI TCATGA 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 571
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 5 cut(s) 39, 173, 744, 878, 880
BspQI GCTCTTC 1 cut(s) 665
BspTI CTTAAG 1 cut(s) 548
BspTNI GGTCTC 2 cut(s) 613, 1106
BsrDI GCAATG 2 cut(s) 436, 475
BsrI ACTGG 4 cut(s) 321, 418, 469, 487
BssMI GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 2 cut(s) 247, 524
Bst6I CTCTTC 3 cut(s) 567, 665, 990
BstAFI CTTAAG 1 cut(s) 548
BstC8I GCNNGC 2 cut(s) 301, 685
BstDEI CTNAG 6 cut(s) 24, 600, 645, 768, 786, 1043
BstF5I GGATG 5 cut(s) 392, 444, 561, 778, 1068
BstKTI GATC 8 cut(s) 34, 73, 181, 739, 875, 886, 1035, 1108
BstMAI GTCTC 5 cut(s) 12, 613, 785, 1106, 1125
BstMBI GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
BstMWI GCNNNNNNNGC 1 cut(s) 1076
BstNI CCWGG 1 cut(s) 211
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 2 cut(s) 209, 447
BstSFI CTRYAG 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 553, 740
BstX2I RGATCY 1 cut(s) 872
BstYI RGATCY 1 cut(s) 872
BsuRI GGCC 2 cut(s) 664, 683
BtsCI GGATG 5 cut(s) 392, 444, 561, 778, 1068
BtsI GCAGTG 3 cut(s) 310, 502, 738
BtsIMutI CAGTG 7 cut(s) 243, 310, 462, 480, 502, 585, 738
Cac8I GCNNGC 2 cut(s) 301, 685
CciI TCATGA 1 cut(s) 106
CsiI ACCWGGT 1 cut(s) 209
CviAII CATG 3 cut(s) 107, 385, 560
DdeI CTNAG 6 cut(s) 24, 600, 645, 768, 786, 1043
DpnI GATC 8 cut(s) 33, 72, 180, 738, 874, 885, 1034, 1107
DpnII GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
Eam1104I CTCTTC 3 cut(s) 567, 665, 990
EarI CTCTTC 3 cut(s) 567, 665, 990
Ecl136II GAGCTC 3 cut(s) 79, 747, 1047
Eco24I GRGCYC 3 cut(s) 81, 749, 1049
Eco31I GGTCTC 2 cut(s) 613, 1106
Eco32I GATATC 1 cut(s) 1096
Eco53kI GAGCTC 3 cut(s) 79, 747, 1047
Eco57I CTGAAG 1 cut(s) 204
EcoICRI GAGCTC 3 cut(s) 79, 747, 1047
EcoRII CCWGG 1 cut(s) 209
EcoRV GATATC 1 cut(s) 1096
EcoT22I ATGCAT 2 cut(s) 561, 598
EcoT38I GRGCYC 3 cut(s) 81, 749, 1049
FaeI CATG 3 cut(s) 110, 388, 563
FaqI GGGAC 1 cut(s) 941
FatI CATG 3 cut(s) 106, 384, 559
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 2 cut(s) 567, 729
FokI GGATG 5 cut(s) 379, 431, 568, 785, 1075
FriOI GRGCYC 3 cut(s) 81, 749, 1049
Fsp4HI GCNGC 2 cut(s) 567, 729
FspBI CTAG 3 cut(s) 300, 750, 903
GluI GCNGC 2 cut(s) 567, 729
GsuI CTGGAG 2 cut(s) 504, 1013
HaeIII GGCC 2 cut(s) 664, 683
HapII CCGG 3 cut(s) 288, 449, 492
Hin1II CATG 3 cut(s) 110, 388, 563
HincII GTYRAC 2 cut(s) 250, 976
HindII GTYRAC 2 cut(s) 250, 976
HindIII AAGCTT 1 cut(s) 1037
HinfI GANTC 6 cut(s) 5, 144, 488, 921, 939, 949
HpaII CCGG 3 cut(s) 288, 449, 492
HphI GGTGA 2 cut(s) 203, 712
Hpy166II GTNNAC 3 cut(s) 250, 390, 976
Hpy188I TCNGA 7 cut(s) 327, 601, 691, 769, 817, 1044, 1051
Hpy188III TCNNGA 7 cut(s) 74, 107, 182, 275, 788, 1030, 1103
Hpy8I GTNNAC 3 cut(s) 250, 390, 976
HpyAV CCTTC 2 cut(s) 104, 691
HpyCH4III ACNGT 2 cut(s) 247, 524
HpyCH4V TGCA 8 cut(s) 262, 544, 559, 569, 596, 878, 946, 1111
HpyF10VI GCNNNNNNNGC 1 cut(s) 1076
HpyF3I CTNAG 6 cut(s) 24, 600, 645, 768, 786, 1043
Hsp92II CATG 3 cut(s) 110, 388, 563
Kzo9I GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
LguI GCTCTTC 1 cut(s) 665
LmnI GCTCC 4 cut(s) 800, 1032, 1052, 1075
Lsp1109I GCAGC 2 cut(s) 553, 740
LweI GCATC 4 cut(s) 546, 553, 605, 682
MabI ACCWGGT 1 cut(s) 209
MaeI CTAG 3 cut(s) 300, 750, 903
MaeIII GTNAC 5 cut(s) 353, 458, 476, 605, 722
MalI GATC 8 cut(s) 33, 72, 180, 738, 874, 885, 1034, 1107
MboI GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
MboII GAAGA 7 cut(s) 80, 260, 290, 584, 661, 682, 1007
MflI RGATCY 1 cut(s) 872
MhlI GDGCHC 3 cut(s) 81, 749, 1049
MluCI AATT 2 cut(s) 148, 337
MlyI GAGTC 2 cut(s) 14, 948
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 9 cut(s) 19, 133, 282, 546, 654, 763, 863, 905, 991
Mph1103I ATGCAT 2 cut(s) 561, 598
MseI TTAA 2 cut(s) 549, 840
MslI CAYNNNNRTG 1 cut(s) 1129
MspCI CTTAAG 1 cut(s) 548
MspI CCGG 3 cut(s) 288, 449, 492
MspR9I CCNGG 2 cut(s) 211, 449
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 1076
NciI CCSGG 1 cut(s) 449
NdeII GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 3 cut(s) 110, 388, 563
NmuCI GTSAC 1 cut(s) 458
NsiI ATGCAT 2 cut(s) 561, 598
NspI RCATGY 1 cut(s) 388
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 384
PciSI GCTCTTC 1 cut(s) 665
PfeI GAWTC 4 cut(s) 144, 488, 921, 949
PflFI GACNNNGTC 1 cut(s) 245
PkrI GCNGC 2 cut(s) 568, 730
PleI GAGTC 2 cut(s) 13, 947
PpsI GAGTC 2 cut(s) 13, 947
PscI ACATGT 1 cut(s) 384
PsiI TTATAA 2 cut(s) 759, 1083
Psp124BI GAGCTC 3 cut(s) 81, 749, 1049
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 1 cut(s) 872
PsyI GACNNNGTC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 1129
SacI GAGCTC 3 cut(s) 81, 749, 1049
SapI GCTCTTC 1 cut(s) 665
SaqAI TTAA 2 cut(s) 549, 840
SatI GCNGC 2 cut(s) 567, 729
Sau3AI GATC 8 cut(s) 31, 70, 178, 736, 872, 883, 1032, 1105
SchI GAGTC 2 cut(s) 14, 948
ScrFI CCNGG 2 cut(s) 211, 449
SduI GDGCHC 3 cut(s) 81, 749, 1049
SexAI ACCWGGT 1 cut(s) 209
SfaNI GCATC 4 cut(s) 546, 553, 605, 682
SfcI CTRYAG 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 1129
SmlI CTYRAG 2 cut(s) 273, 548
SmoI CTYRAG 2 cut(s) 273, 548
Sse9I AATT 2 cut(s) 148, 337
SspMI CTAG 3 cut(s) 300, 750, 903
SstI GAGCTC 3 cut(s) 81, 749, 1049
StyD4I CCNGG 2 cut(s) 209, 447
TaaI ACNGT 2 cut(s) 247, 524
TaqI TCGA 4 cut(s) 81, 632, 739, 1104
TaqII GACCGA 1 cut(s) 1088
TasI AATT 2 cut(s) 148, 337
TfiI GAWTC 4 cut(s) 144, 488, 921, 949
Tru1I TTAA 2 cut(s) 549, 840
Tru9I TTAA 2 cut(s) 549, 840
TscAI CASTG 7 cut(s) 250, 310, 469, 487, 502, 592, 738
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 566, 728
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 7 cut(s) 105, 123, 210, 221, 433, 719, 726
TspGWI ACGGA 1 cut(s) 1101
TspRI CASTG 7 cut(s) 250, 310, 469, 487, 502, 592, 738
Tth111I GACNNNGTC 1 cut(s) 245
Vha464I CTTAAG 1 cut(s) 548
XceI RCATGY 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 389
XspI CTAG 3 cut(s) 300, 750, 903
Zsp2I ATGCAT 2 cut(s) 561, 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.