Rh6AG060900

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002575
Physical Location & Seq
Forward (+)
9111393 .. 9113044
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG060900.1

Sequence Viewer

Length: 1017 bp
ATGGAGTATGTTGGAGCTGTTTCGGAAGGAGAATGGAGCTCATTGAGTGGGATGTACACTGCTGAGGAAGCGGATTTCATGGCCCAGTTGCTTGAAAACTCTCCACTTTCAAGCATGCCAGGCATGGAAGTCCCAGATGCTTTCTGGCAAGGCAATGAAGAATCAACATTGCACATGTCAGGCTACTATGAAGGTTCACATTGTTCTTTAGAAACGACTAATTCTAATTTCATCGCTTCAAGCAACGAAAGCTACTACTTGAGTGATTCTAACCAAATGTTGGCAATAAACAACAATAGCACTAGCTCTATGTCGATTGATTTTGGTATCGGGGATGTGAAAACCATCAATACCTATCTCATTGAAAGAGATGAACGTGATCAATGCTCAAACCGAGAAACAAGTAAAGGCAACATCGAAGTGTCTGGTGGGAGCAGGCCTGAAGCTGTCAATCTTGAGAAGAGGAGATCTCAAAGTAGCCTCTCCAAGATTAACTCCATGAAAAGATCTCAAAGTTCAGGCAATGTTCAAATGAATAAGAGGAGCATGAAGGCAAAGAAGAGTCTGCGGATTACAACTAGCAACAATGAAGATGGTAATGCAGGCCCCAATAGACAGAGTTCGAGTAGTTGCTGCTCAGAAGATGACTCCATTGTTTGTGAGGTGAGTGGAGGGTTTAGTCCAACTTCAAGCTTGAGTCCAAAGGATGCTGCAGTTCCTGACTTGAATGGAAAATCGAGAGCACGAAGGGGGTCAGCCAGTGATCCGCAAAGCCTCTATGCAAGGAAAAGAAGAGAGAAAATAAATGAGAGGCTGAGAGTTCTGCAGAACCTTGTCCCCAATGGAACAAAGGTTGATATTAGCACCATGCTTGAGGAAGCTGTCCATTATGTGAAGTTCTTACAACTCCAAATTAAGCTGTTAAGTTCTGATGATATGTGGATGTATGCTCCCATCTGTTACAATGGAATGGACCTCGGACTTGATCGGAAACTCCCTACACCAAGCCAACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

338

Amino Acids

37.26

Weight (kDa)

5.25

Isoelectric Point (pI)

64.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 262 - 302 2.3e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 263 - 309 7.8e-07 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 280
AciI CCGC 3 cut(s) 71, 568, 767
AclWI GGATC 1 cut(s) 758
AcuI CTGAAG 1 cut(s) 462
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 7 cut(s) 95, 111, 240, 365, 530, 690, 727
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 8 cut(s) 17, 39, 252, 306, 446, 693, 881, 919
AluI AGCT 8 cut(s) 17, 39, 252, 306, 446, 693, 881, 919
Alw21I GWGCWC 2 cut(s) 41, 745
AlwI GGATC 1 cut(s) 758
AlwNI CAGNNNCTG 1 cut(s) 719
AoxI GGCC 3 cut(s) 81, 437, 604
ApeKI GCWGC 2 cut(s) 633, 710
AspS9I GGNCC 3 cut(s) 82, 605, 973
AsuHPI GGTGA 1 cut(s) 676
AvaII GGWCC 1 cut(s) 973
BanII GRGCYC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 41, 745
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 2 cut(s) 620, 697
BccI CCATC 3 cut(s) 353, 587, 962
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 379
BfaI CTAG 2 cut(s) 303, 579
BfmI CTRYAG 2 cut(s) 711, 824
BglII AGATCT 2 cut(s) 467, 506
BisI GCNGC 2 cut(s) 634, 711
BlsI GCNGC 2 cut(s) 635, 712
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 973
BmgT120I GGNCC 3 cut(s) 82, 605, 973
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 1 cut(s) 120
BmrI ACTGGG 1 cut(s) 79
BmsI GCATC 2 cut(s) 127, 697
BmuI ACTGGG 1 cut(s) 79
BplI GAGNNNNNCTC 2 cut(s) 454, 486
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 4 cut(s) 280, 476, 715, 893
BsaJI CCNNGG 1 cut(s) 976
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse1I ACTGG 2 cut(s) 85, 759
Bse3DI GCAATG 3 cut(s) 160, 167, 529
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 976
BseGI GGATG 4 cut(s) 57, 340, 712, 948
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 3 cut(s) 160, 167, 529
BseMII CTCAG 3 cut(s) 54, 651, 806
BseNI ACTGG 2 cut(s) 85, 759
BseRI GAGGAG 2 cut(s) 478, 556
BseXI GCAGC 2 cut(s) 620, 697
BshFI GGCC 3 cut(s) 83, 439, 606
BsiHKAI GWGCWC 2 cut(s) 41, 745
BslFI GGGAC 2 cut(s) 116, 821
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 2 cut(s) 116, 821
BsnI GGCC 3 cut(s) 83, 439, 606
Bsp1286I GDGCHC 2 cut(s) 41, 745
Bsp1407I TGTACA 1 cut(s) 54
Bsp143I GATC 5 cut(s) 379, 467, 506, 763, 985
BspACI CCGC 3 cut(s) 71, 568, 767
BspANI GGCC 3 cut(s) 83, 439, 606
BspCNI CTCAG 3 cut(s) 55, 650, 807
BspLI GGNNCC 1 cut(s) 607
BspMAI CTGCAG 2 cut(s) 715, 828
BspPI GGATC 1 cut(s) 758
BsrDI GCAATG 3 cut(s) 160, 167, 529
BsrGI TGTACA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 85, 759
BssECI CCNNGG 1 cut(s) 976
BssMI GATC 5 cut(s) 379, 467, 506, 763, 985
Bst2UI CCWGG 1 cut(s) 120
Bst6I CTCTTC 3 cut(s) 455, 554, 787
BstAUI TGTACA 1 cut(s) 54
BstC8I GCNNGC 3 cut(s) 116, 437, 604
BstDEI CTNAG 4 cut(s) 63, 637, 815, 1014
BstF5I GGATG 4 cut(s) 57, 340, 712, 948
BstKTI GATC 5 cut(s) 382, 470, 509, 766, 988
BstMBI GATC 5 cut(s) 379, 467, 506, 763, 985
BstMWI GCNNNNNNNGC 3 cut(s) 68, 120, 249
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 118, 178
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 2 cut(s) 711, 824
BstV1I GCAGC 2 cut(s) 620, 697
BstX2I RGATCY 2 cut(s) 467, 506
BstYI RGATCY 2 cut(s) 467, 506
BsuRI GGCC 3 cut(s) 83, 439, 606
BtgZI GCGATG 1 cut(s) 217
BtsCI GGATG 4 cut(s) 57, 340, 712, 948
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 2 cut(s) 57, 766
Cac8I GCNNGC 3 cut(s) 116, 437, 604
CaiI CAGNNNCTG 1 cut(s) 719
Cfr13I GGNCC 3 cut(s) 82, 605, 973
Csp6I GTAC 1 cut(s) 55
CviAII CATG 7 cut(s) 79, 115, 124, 175, 499, 547, 868
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 4 cut(s) 63, 637, 815, 1014
DpnI GATC 5 cut(s) 381, 469, 508, 765, 987
DpnII GATC 5 cut(s) 379, 467, 506, 763, 985
Eam1104I CTCTTC 3 cut(s) 455, 554, 787
EarI CTCTTC 3 cut(s) 455, 554, 787
Ecl136II GAGCTC 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 973
Eco53kI GAGCTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 39
EcoO109I RGGNCCY 1 cut(s) 605
EcoRII CCWGG 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 7 cut(s) 82, 118, 127, 178, 502, 550, 871
FalI AAGNNNNNCTT 1 cut(s) 997
FaqI GGGAC 2 cut(s) 116, 821
FatI CATG 7 cut(s) 78, 114, 123, 174, 498, 546, 867
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 634, 711
FokI GGATG 4 cut(s) 64, 347, 719, 955
FriOI GRGCYC 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 634, 711
FspBI CTAG 2 cut(s) 303, 579
GluI GCNGC 2 cut(s) 634, 711
HaeIII GGCC 3 cut(s) 83, 439, 606
Hin1II CATG 7 cut(s) 82, 118, 127, 178, 502, 550, 871
HindIII AAGCTT 1 cut(s) 691
HinfI GANTC 5 cut(s) 161, 266, 562, 647, 697
HphI GGTGA 1 cut(s) 676
Hpy166II GTNNAC 2 cut(s) 57, 197
Hpy188I TCNGA 5 cut(s) 25, 640, 931, 980, 990
Hpy188III TCNNGA 3 cut(s) 455, 719, 738
Hpy8I GTNNAC 2 cut(s) 57, 197
HpyAV CCTTC 4 cut(s) 20, 185, 544, 741
HpyCH4IV ACGT 1 cut(s) 376
HpyCH4V TGCA 5 cut(s) 172, 602, 713, 782, 826
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 120, 249
HpyF3I CTNAG 4 cut(s) 63, 637, 815, 1014
HpySE526I ACGT 1 cut(s) 376
Hsp92II CATG 7 cut(s) 82, 118, 127, 178, 502, 550, 871
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 5 cut(s) 379, 467, 506, 763, 985
LmnI GCTCC 5 cut(s) 14, 36, 432, 543, 955
Lsp1109I GCAGC 2 cut(s) 620, 697
LweI GCATC 2 cut(s) 127, 697
MaeI CTAG 2 cut(s) 303, 579
MaeII ACGT 1 cut(s) 376
MaeIII GTNAC 1 cut(s) 959
MalI GATC 5 cut(s) 381, 469, 508, 765, 987
MboI GATC 5 cut(s) 379, 467, 506, 763, 985
MboII GAAGA 6 cut(s) 170, 472, 571, 602, 653, 804
MflI RGATCY 2 cut(s) 467, 506
MhlI GDGCHC 2 cut(s) 41, 745
MluCI AATT 3 cut(s) 220, 226, 912
MlyI GAGTC 3 cut(s) 571, 641, 706
MmeI TCCRAC 1 cut(s) 707
MseI TTAA 3 cut(s) 492, 915, 923
MslI CAYNNNNRTG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 68, 120, 249
NdeII GATC 5 cut(s) 379, 467, 506, 763, 985
NlaIII CATG 7 cut(s) 82, 118, 127, 178, 502, 550, 871
NlaIV GGNNCC 1 cut(s) 607
NspI RCATGY 2 cut(s) 118, 178
PaeI GCATGC 1 cut(s) 118
PceI AGGCCT 1 cut(s) 439
PciI ACATGT 1 cut(s) 174
PfeI GAWTC 2 cut(s) 161, 266
PflMI CCANNNNNTGG 1 cut(s) 280
PkrI GCNGC 2 cut(s) 635, 712
PleI GAGTC 3 cut(s) 570, 641, 705
PpsI GAGTC 3 cut(s) 570, 641, 705
PscI ACATGT 1 cut(s) 174
Psp124BI GAGCTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 3 cut(s) 82, 605, 973
PstI CTGCAG 2 cut(s) 715, 828
PstNI CAGNNNCTG 1 cut(s) 719
PsuI RGATCY 2 cut(s) 467, 506
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 492, 915, 923
SatI GCNGC 2 cut(s) 634, 711
Sau3AI GATC 5 cut(s) 379, 467, 506, 763, 985
Sau96I GGNCC 3 cut(s) 82, 605, 973
SchI GAGTC 3 cut(s) 571, 641, 706
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 41, 745
SfaNI GCATC 2 cut(s) 127, 697
SfcI CTRYAG 2 cut(s) 711, 824
SinI GGWCC 1 cut(s) 973
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 4 cut(s) 259, 455, 694, 872
SmoI CTYRAG 4 cut(s) 259, 455, 694, 872
SphI GCATGC 1 cut(s) 118
Sse9I AATT 3 cut(s) 220, 226, 912
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 3 cut(s) 71, 568, 767
SspMI CTAG 2 cut(s) 303, 579
SstI GAGCTC 1 cut(s) 41
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 1 cut(s) 118
TaiI ACGT 1 cut(s) 379
TaqI TCGA 4 cut(s) 314, 417, 623, 737
TasI AATT 3 cut(s) 220, 226, 912
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 2 cut(s) 161, 266
Tru1I TTAA 3 cut(s) 492, 915, 923
Tru9I TTAA 3 cut(s) 492, 915, 923
TscAI CASTG 2 cut(s) 64, 766
TseI GCWGC 2 cut(s) 633, 710
TspDTI ATGAA 9 cut(s) 67, 171, 204, 220, 387, 515, 548, 563, 603
TspRI CASTG 2 cut(s) 64, 766
Van91I CCANNNNNTGG 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 973
XceI RCATGY 2 cut(s) 118, 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XspI CTAG 2 cut(s) 303, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.