Rh6DG485500

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0002575
Physical Location & Seq
Forward (+)
64774043 .. 64775666
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG485500.1

Sequence Viewer

Length: 1140 bp
ATGGAGTCTCTTGGTGTTTTTGCTGAGGGAGATCAATGGGAGTGCTTAAGCAGATTGTTCTCTAACGAAGATCAAGAGCTAGATTTCACACCGCATTTTCTTGGTGATCATGAAGGTTCATTTCCTTTCCAACACAATGAGGGATTCAATTTTGAAACCCCAACCACCCTTTTCCCCAATCCTGAAGCTGGTGATGAAATGGGATTGAACAGGTTCAATCAGAGCTTCTTTCATTCTTTAGACTCTCTCAGCTCTAATATGCACTATCTTCCTCAAGAAAATAATTCTGGTTATAGTGCTAGCAGTGGCATTTTTACTGCCATTCTGAACCCGGAGAATTACTACTTTGGTGGTAACTCTTGCCATACCCCAATGAGTAATGACATCTCTACATCCGTTGATGTTTCTATGACTGGGAATATTGAGAGCAATTTTGGGTCATTCATCCCGGCATTTAGTGACATTGGGATGGAAGGAGCTGTCTGTAACACTGAATATTCCGGCAGTGGCAGAATGGGCTTTTCAGATGACAGTCAACCACCAAAGGAACTGCAACTCAAGAGGATGCATGATGCGGCGGCAGAGAAACCCAACCCTGAAGATGCATCCGAGAGTAATCCAAAGAAGAAACCCCGTTTGTCGAAAGATAAAACTAAGAAGAGCAATGCGAGGTCAAAGAAGGGCCAAAAGGCTAACTCAGATCTGAAGGTGAAAGATGAAGACGAGAGTAACACAGGAGTGGACAGACAGAGCTCTAGCTCTTATAACAGCTCTGAGGATGACAATGCTTCTCAAGAAACCAATGGGGCAGGAGAAATTTCAGACCCCAAATCATCATCAGCCCTTAACTTGAATGGCAAGACAAGAGCCAATAGAGGGTCTGCAACTGATCCCCAGAGCCTCTATGCTAGGAAACGAAGGGAGAGAATCAACGAGCGATTGAGAGTCTTGCAGAATCTTGTCCCTAATGGAACAAAGGTTGACATCAGCACAATGCTGGAAGAGGCAGTCCATTATGTCAAGTTTTTACAGCTCCAGATCAAGCTTTTGAGCTCCGATGACATGTGGATGTATGCTCCTATTGCTTATAACGGAATGGATATCGGTCTCGACCTGCATAAGATGTCTCCACTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

379

Amino Acids

41.99

Weight (kDa)

4.95

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 304 - 344 2.5e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 305 - 351 7.4e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 765, 1089
Acc36I ACCTGC 1 cut(s) 1122
AciI CCGC 3 cut(s) 92, 575, 578
AclWI GGATC 1 cut(s) 884
AcsI RAATTY 1 cut(s) 816
AcuI CTGAAG 3 cut(s) 204, 618, 725
AfiI CCNNNNNNNGG 2 cut(s) 188, 876
AflII CTTAAG 1 cut(s) 46
AflIII ACRYGT 1 cut(s) 1062
AgsI TTSAA 5 cut(s) 148, 155, 208, 217, 853
AleI CACNNNNGTG 1 cut(s) 737
Alw21I GWGCWC 2 cut(s) 755, 1055
Alw26I GTCTC 3 cut(s) 12, 1112, 1131
AlwI GGATC 1 cut(s) 884
AoxI GGCC 1 cut(s) 682
ApoI RAATTY 1 cut(s) 816
Asp700I GAANNNNTTC 1 cut(s) 212
AspS9I GGNCC 1 cut(s) 682
AsuC2I CCSGG 2 cut(s) 332, 449
AsuHPI GGTGA 3 cut(s) 116, 203, 721
AsuNHI GCTAGC 1 cut(s) 299
BanII GRGCYC 2 cut(s) 755, 1055
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 2 cut(s) 755, 1055
BbvCI CCTCAGC 1 cut(s) 24
BccI CCATC 1 cut(s) 463
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 2 cut(s) 332, 449
BcoDI GTCTC 3 cut(s) 12, 1112, 1131
BfaI CTAG 4 cut(s) 80, 300, 756, 909
BfrI CTTAAG 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 1122
BglII AGATCT 1 cut(s) 700
BisI GCNGC 2 cut(s) 576, 579
BlsI GCNGC 2 cut(s) 577, 580
Bme1390I CCNGG 2 cut(s) 332, 449
BmgT120I GGNCC 1 cut(s) 682
BmrFI CCNGG 2 cut(s) 332, 449
BmrI ACTGGG 1 cut(s) 423
BmsI GCATC 4 cut(s) 555, 562, 592, 614
BmtI GCTAGC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 1019
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 3 cut(s) 258, 542, 777
BpuMI CCSGG 2 cut(s) 332, 449
BsaI GGTCTC 1 cut(s) 1112
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 876
Bse1I ACTGG 1 cut(s) 418
Bse3DI GCAATG 1 cut(s) 670
BseGI GGATG 7 cut(s) 392, 444, 474, 570, 605, 784, 1074
BseLI CCNNNNNNNGG 2 cut(s) 188, 876
BseMI GCAATG 1 cut(s) 670
BseMII CTCAG 4 cut(s) 15, 262, 711, 765
BseNI ACTGG 1 cut(s) 418
BshFI GGCC 1 cut(s) 684
BsiHKAI GWGCWC 2 cut(s) 755, 1055
BsiSI CCGG 3 cut(s) 332, 449, 501
BslFI GGGAC 1 cut(s) 947
BslI CCNNNNNNNGG 2 cut(s) 188, 876
BsmAI GTCTC 3 cut(s) 12, 1112, 1131
BsmFI GGGAC 1 cut(s) 947
BsnI GGCC 1 cut(s) 684
Bso31I GGTCTC 1 cut(s) 1112
Bsp1286I GDGCHC 2 cut(s) 755, 1055
Bsp143I GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
BspACI CCGC 3 cut(s) 92, 575, 578
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 4 cut(s) 16, 261, 710, 766
BspHI TCATGA 1 cut(s) 109
BspMI ACCTGC 1 cut(s) 1122
BspOI GCTAGC 1 cut(s) 303
BspPI GGATC 1 cut(s) 884
BspQI GCTCTTC 1 cut(s) 653
BspTI CTTAAG 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 1112
BsrDI GCAATG 1 cut(s) 670
BsrI ACTGG 1 cut(s) 418
BssMI GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
Bst4CI ACNGT 1 cut(s) 533
Bst6I CTCTTC 2 cut(s) 653, 996
BstAFI CTTAAG 1 cut(s) 46
BstC8I GCNNGC 1 cut(s) 301
BstDEI CTNAG 5 cut(s) 24, 248, 654, 697, 774
BstF5I GGATG 7 cut(s) 392, 444, 474, 570, 605, 784, 1074
BstKTI GATC 6 cut(s) 34, 73, 109, 703, 892, 1041
BstMAI GTCTC 3 cut(s) 12, 1112, 1131
BstMBI GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
BstMWI GCNNNNNNNGC 2 cut(s) 516, 1082
BstNSI RCATGY 1 cut(s) 1066
BstSCI CCNGG 2 cut(s) 330, 447
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
BsuRI GGCC 1 cut(s) 684
BtsCI GGATG 7 cut(s) 392, 444, 474, 570, 605, 784, 1074
BtsI GCAGTG 2 cut(s) 310, 511
BtsIMutI CAGTG 3 cut(s) 310, 489, 511
BveI ACCTGC 1 cut(s) 1122
Cac8I GCNNGC 1 cut(s) 301
CciI TCATGA 1 cut(s) 109
Cfr13I GGNCC 1 cut(s) 682
CviAII CATG 3 cut(s) 110, 569, 1063
DdeI CTNAG 5 cut(s) 24, 248, 654, 697, 774
DpnI GATC 6 cut(s) 33, 72, 108, 702, 891, 1040
DpnII GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
Eam1104I CTCTTC 2 cut(s) 653, 996
EarI CTCTTC 2 cut(s) 653, 996
Ecl136II GAGCTC 2 cut(s) 753, 1053
Eco24I GRGCYC 2 cut(s) 755, 1055
Eco31I GGTCTC 1 cut(s) 1112
Eco32I GATATC 1 cut(s) 1102
Eco53kI GAGCTC 2 cut(s) 753, 1053
Eco57I CTGAAG 3 cut(s) 204, 618, 725
EcoICRI GAGCTC 2 cut(s) 753, 1053
EcoRV GATATC 1 cut(s) 1102
EcoT22I ATGCAT 2 cut(s) 570, 607
EcoT38I GRGCYC 2 cut(s) 755, 1055
FaeI CATG 3 cut(s) 113, 572, 1066
FaqI GGGAC 1 cut(s) 947
FatI CATG 3 cut(s) 109, 568, 1062
FbaI TGATCA 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 576, 579
FokI GGATG 7 cut(s) 379, 431, 481, 577, 592, 791, 1081
FriOI GRGCYC 2 cut(s) 755, 1055
Fsp4HI GCNGC 2 cut(s) 576, 579
FspBI CTAG 4 cut(s) 80, 300, 756, 909
GluI GCNGC 2 cut(s) 576, 579
GsuI CTGGAG 1 cut(s) 1019
HaeIII GGCC 1 cut(s) 684
HapII CCGG 3 cut(s) 332, 449, 501
Hin1II CATG 3 cut(s) 113, 572, 1066
HincII GTYRAC 2 cut(s) 536, 982
HindII GTYRAC 2 cut(s) 536, 982
HindIII AAGCTT 1 cut(s) 1043
HinfI GANTC 6 cut(s) 5, 144, 242, 927, 945, 955
HpaII CCGG 3 cut(s) 332, 449, 501
HphI GGTGA 3 cut(s) 116, 203, 721
Hpy166II GTNNAC 3 cut(s) 536, 742, 982
Hpy188I TCNGA 9 cut(s) 222, 327, 526, 610, 700, 705, 775, 823, 1057
Hpy188III TCNNGA 8 cut(s) 74, 110, 182, 275, 559, 794, 1036, 1109
Hpy8I GTNNAC 3 cut(s) 536, 742, 982
HpyAV CCTTC 5 cut(s) 107, 467, 673, 700, 912
HpyCH4III ACNGT 1 cut(s) 533
HpyCH4V TGCA 7 cut(s) 262, 553, 568, 605, 884, 952, 1117
HpyF10VI GCNNNNNNNGC 2 cut(s) 516, 1082
HpyF3I CTNAG 5 cut(s) 24, 248, 654, 697, 774
Hsp92II CATG 3 cut(s) 113, 572, 1066
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
LguI GCTCTTC 1 cut(s) 653
LmnI GCTCC 4 cut(s) 476, 1038, 1058, 1081
LweI GCATC 4 cut(s) 555, 562, 592, 614
MaeI CTAG 4 cut(s) 80, 300, 756, 909
MaeIII GTNAC 4 cut(s) 353, 458, 485, 728
MalI GATC 6 cut(s) 33, 72, 108, 702, 891, 1040
MboI GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
MboII GAAGA 7 cut(s) 80, 260, 611, 637, 670, 731, 1013
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 2 cut(s) 755, 1055
MluCI AATT 5 cut(s) 148, 283, 337, 430, 816
MlyI GAGTC 3 cut(s) 14, 236, 954
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 9 cut(s) 19, 133, 282, 555, 663, 769, 869, 911, 997
Mph1103I ATGCAT 2 cut(s) 570, 607
MroXI GAANNNNTTC 1 cut(s) 212
MseI TTAA 2 cut(s) 47, 846
MslI CAYNNNNRTG 4 cut(s) 467, 737, 1067, 1135
MspCI CTTAAG 1 cut(s) 46
MspI CCGG 3 cut(s) 332, 449, 501
MspR9I CCNGG 2 cut(s) 332, 449
MwoI GCNNNNNNNGC 2 cut(s) 516, 1082
NciI CCSGG 2 cut(s) 332, 449
NdeII GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
NheI GCTAGC 1 cut(s) 299
NlaIII CATG 3 cut(s) 113, 572, 1066
NmuCI GTSAC 1 cut(s) 458
NsiI ATGCAT 2 cut(s) 570, 607
NspI RCATGY 1 cut(s) 1066
OliI CACNNNNGTG 1 cut(s) 737
PagI TCATGA 1 cut(s) 109
PciI ACATGT 1 cut(s) 1062
PciSI GCTCTTC 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 3 cut(s) 144, 927, 955
PkrI GCNGC 2 cut(s) 577, 580
PleI GAGTC 3 cut(s) 13, 236, 953
PpsI GAGTC 3 cut(s) 13, 236, 953
PscI ACATGT 1 cut(s) 1062
PsiI TTATAA 2 cut(s) 765, 1089
Psp124BI GAGCTC 2 cut(s) 755, 1055
PspPI GGNCC 1 cut(s) 682
PsuI RGATCY 1 cut(s) 700
RseI CAYNNNNRTG 4 cut(s) 467, 737, 1067, 1135
SacI GAGCTC 2 cut(s) 755, 1055
SapI GCTCTTC 1 cut(s) 653
SaqAI TTAA 2 cut(s) 47, 846
SatI GCNGC 2 cut(s) 576, 579
Sau3AI GATC 6 cut(s) 31, 70, 106, 700, 889, 1038
Sau96I GGNCC 1 cut(s) 682
SchI GAGTC 3 cut(s) 14, 236, 954
ScrFI CCNGG 2 cut(s) 332, 449
SduI GDGCHC 2 cut(s) 755, 1055
SfaNI GCATC 4 cut(s) 555, 562, 592, 614
SmiMI CAYNNNNRTG 4 cut(s) 467, 737, 1067, 1135
SmlI CTYRAG 4 cut(s) 46, 273, 557, 792
SmoI CTYRAG 4 cut(s) 46, 273, 557, 792
Sse9I AATT 5 cut(s) 148, 283, 337, 430, 816
SsiI CCGC 3 cut(s) 92, 575, 578
SspI AATATT 2 cut(s) 421, 497
SspMI CTAG 4 cut(s) 80, 300, 756, 909
SstI GAGCTC 2 cut(s) 755, 1055
StyD4I CCNGG 2 cut(s) 330, 447
TaaI ACNGT 1 cut(s) 533
TaqI TCGA 2 cut(s) 641, 1110
TaqII GACCGA 1 cut(s) 1094
TasI AATT 5 cut(s) 148, 283, 337, 430, 816
TauI GCSGC 2 cut(s) 578, 581
TfiI GAWTC 3 cut(s) 144, 927, 955
Tru1I TTAA 2 cut(s) 47, 846
Tru9I TTAA 2 cut(s) 47, 846
TscAI CASTG 3 cut(s) 310, 496, 511
TseFI GTSAC 1 cut(s) 458
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 6 cut(s) 108, 126, 210, 221, 433, 732
TspGWI ACGGA 2 cut(s) 385, 1107
TspRI CASTG 3 cut(s) 310, 496, 511
Vha464I CTTAAG 1 cut(s) 46
XapI RAATTY 1 cut(s) 816
XceI RCATGY 1 cut(s) 1066
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 4 cut(s) 80, 300, 756, 909
Zsp2I ATGCAT 2 cut(s) 570, 607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.