Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002575

Physical Location & Seq

Genomic Coordinates Reverse (-)

7162012 .. 7163604

Gene Structure 1593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1086200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGAATCTGTTGGTGTTTTTGCTGATGGGGAATGGGAATCTTTGAACAGGTTGTTTACTTCCGAAGAGGTTGAGTTCACACCACATTTTCTTTCCCAGGGAAATTCATTCCCTTTCCAGCACAATGAGGGAATGGGATTTGAAACCCGAGAATCTTTTTACCCCAATATTCCTGGAGCTGAAACCTTTTTTCACCATCCTTCTTCAGATAGTCCCAATTCTAATGTGGACTATCTTTCTTCTCAAGAGAGTTGTAACTATGGTGACCATAATCATGGCATTTTTACTACCATTTTGAACCAGGAAAATTGCTACTTTAGTAATTCTTGCAATTTCCCAGTGAGTAATATTGATGTCTCTGAATCCATGGATGTTTATATGAATCGTGATGGGAAGAGTTTCGCCTCCTTCGTCCCGGCTTTTTCTGACATTGTGATGCATGGAAGTGAGTGCAACAAAGAGGATTCCGGCAGTGATAGCCAGCCGGCTATTGTTCCGGTTCCTGAAAAGGAATTGCAGCTCAAAAGCGTGCATGATGCGCCGGAAAAATCCAGCAATGACACATCCGACAACAATCCGAAGAAGAAGCCTCGTCTATCGAAAGATGTAGAAAAAAGTAAGAAAAATAATGTAAGGTCAAAGAAGGGGCAAAAGGGTAATTCAGATGTGAAATTCAAAGATGAAGAAGAGAGGCTGCAGAGCACAAGTTCTTGCACCTCTGAGGGTGATAATGGTTCTCTGGAGATCAATGGAGGAGAAACTTCAGACCCCAAAGCTTCATCTACCCTTAACTTGAATGGGAAGACCAGAGCCAATAGAGGGTCTGCAACTGATCCCCAGAGCCTCTATGCTAGGAAAAGAAGAGAGAGAATCAATGAGAGACTAAGAACCCTACAGCATCTTGTCCCTAATGGAACAAAGGTTGACATTAGCACAATGCTTGAAGAGGCAGTTCACTATGTCAAGTTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCAGATGATATGTGGATGTATGCTCCCATTGCTTATAATGGAATGGATATTGCTCTCGACCTGCAGAAGCTCTCTCCACTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

361

Amino Acids

40.25

Weight (kDa)

5.17

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	285 - 325	1.7e-08	Helix-loop-helix DNA-binding domain
bHLH_LHW	PF23176	287 - 325	9.9e-06	Transcription factor LHW bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002575)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27740 AT5G43175
fragaria_vesca	FvH4_2g04220 FvH4_2g33230 FvH4_4g05902
malus_domestica	MD05G1098900.v1.1 MD08G1086200.v1.1 MD10G1104900.v1.1 MD15G1071200.v1.1
prunus_persica	Prupe.1G424000_v2.0.a1 Prupe.1G424100_v2.0.a1 Prupe.8G143600_v2.0.a1
pyrus_communis	pycom05g09790
rosa_chinensis	RchiOBHm_Chr6g0253641 RchiOBHm_Chr6g0309431
rosa_laevigata	RLG00000010566 RLG00000014997
rosa_multiflora	Rmu_co8093044.1_g000001 Rmu_co8395731.1_g000001 Rmu_co8495863.1_g000001 Rmu_sc0000331.1_g000011 Rmu_sc0007785.1_g000002
rosa_roxburghii	Rroxscaffold_7G00159410 Rroxscaffold_7G00211740
rosa_rugosa	Rorug05G0545200 Rorug06G0372000
rosa_samantha	Rh4AG076300 Rh4CG081200 Rh6AG060900 Rh6AG485100 Rh6BG054700 Rh6BG494300 Rh6CG054300 Rh6CG499300 Rh6DG051800 Rh6DG485500
rosa_wichuraiana	Rw4G006130 Rw4G006170 Rw6G005410 Rw6G042250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1032
Acc36I	ACCTGC	1 cut(s)	1065
AclWI	GGATC	1 cut(s)	827
AcsI	RAATTY	2 cut(s)	103, 671
AcuI	CTGAAG	2 cut(s)	189, 747
AfiI	CCNNNNNNNGG	1 cut(s)	819
AgsI	TTSAA	6 cut(s)	46, 143, 298, 676, 796, 944
AjnI	CCWGG	3 cut(s)	96, 172, 300
AluBI	AGCT	7 cut(s)	179, 520, 776, 976, 988, 996, 1066
AluI	AGCT	7 cut(s)	179, 520, 776, 976, 988, 996, 1066
Alw21I	GWGCWC	1 cut(s)	704
Alw26I	GTCTC	2 cut(s)	361, 874
AlwI	GGATC	1 cut(s)	827
Ama87I	CYCGRG	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	517, 694, 973
ApoI	RAATTY	2 cut(s)	103, 671
Asp700I	GAANNNNTTC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	541
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	3 cut(s)	185, 275, 737
AvaI	CYCGRG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	704
BbvI	GCAGC	3 cut(s)	529, 681, 985
BccI	CCATC	3 cut(s)	20, 204, 383
BciT130I	CCWGG	3 cut(s)	98, 174, 302
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	361, 874
BfaI	CTAG	1 cut(s)	852
BfmI	CTRYAG	3 cut(s)	695, 893, 1058
BfuAI	ACCTGC	1 cut(s)	1065
BisI	GCNGC	3 cut(s)	518, 695, 974
BlsI	GCNGC	3 cut(s)	519, 696, 975
Bme1390I	CCNGG	4 cut(s)	98, 174, 302, 416
BmeT110I	CYCGRG	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	501
BmrFI	CCNGG	4 cut(s)	98, 174, 302, 416
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	426, 526, 907
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	809
BpmI	CTGGAG	2 cut(s)	195, 761
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	416
BsaJI	CCNNGG	3 cut(s)	96, 97, 366
BsaWI	WCCGGW	1 cut(s)	496
Bsc4I	CCNNNNNNNGG	1 cut(s)	819
Bse118I	RCCGGY	1 cut(s)	484
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	2 cut(s)	562, 1023
BseBI	CCWGG	3 cut(s)	98, 174, 302
BseDI	CCNNGG	3 cut(s)	96, 97, 366
BseGI	GGATG	4 cut(s)	196, 376, 563, 1017
BseLI	CCNNNNNNNGG	1 cut(s)	819
BseMI	GCAATG	2 cut(s)	562, 1023
BseMII	CTCAG	2 cut(s)	711, 1011
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	3 cut(s)	529, 681, 985
BsiHKAI	GWGCWC	1 cut(s)	704
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	5 cut(s)	416, 468, 485, 497, 542
BslFI	GGGAC	3 cut(s)	198, 398, 890
BslI	CCNNNNNNNGG	1 cut(s)	819
BsmAI	GTCTC	2 cut(s)	361, 874
BsmFI	GGGAC	3 cut(s)	198, 398, 890
BsoBI	CYCGRG	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	704
Bsp143I	GATC	2 cut(s)	744, 832
Bsp19I	CCATGG	1 cut(s)	366
BspCNI	CTCAG	2 cut(s)	712, 1010
BspLI	GGNNCC	1 cut(s)	501
BspMAI	CTGCAG	2 cut(s)	699, 1062
BspMI	ACCTGC	1 cut(s)	1065
BspPI	GGATC	1 cut(s)	827
BsrDI	GCAATG	2 cut(s)	562, 1023
BsrFI	RCCGGY	1 cut(s)	484
BsrI	ACTGG	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	484
BssECI	CCNNGG	3 cut(s)	96, 97, 366
BssMI	GATC	2 cut(s)	744, 832
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	3 cut(s)	98, 174, 302
Bst6I	CTCTTC	5 cut(s)	60, 389, 681, 856, 939
BstC8I	GCNNGC	3 cut(s)	482, 486, 530
BstDEI	CTNAG	3 cut(s)	720, 884, 997
BstDSI	CCRYGG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	263
BstF5I	GGATG	4 cut(s)	196, 376, 563, 1017
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	747, 835
BstMAI	GTCTC	2 cut(s)	361, 874
BstMBI	GATC	2 cut(s)	744, 832
BstMWI	GCNNNNNNNGC	3 cut(s)	477, 538, 1025
BstNI	CCWGG	3 cut(s)	98, 174, 302
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	4 cut(s)	96, 172, 300, 414
BstSFI	CTRYAG	3 cut(s)	695, 893, 1058
BstV1I	GCAGC	3 cut(s)	529, 681, 985
BstV2I	GAAGAC	1 cut(s)	809
BstXI	CCANNNNNNTGG	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	4 cut(s)	196, 376, 563, 1017
BtsI	GCAGTG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	345, 478
BveI	ACCTGC	1 cut(s)	1065
Cac8I	GCNNGC	3 cut(s)	482, 486, 530
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	1 cut(s)	484
CviAII	CATG	4 cut(s)	275, 367, 440, 533
DdeI	CTNAG	3 cut(s)	720, 884, 997
DpnI	GATC	2 cut(s)	746, 834
DpnII	GATC	2 cut(s)	744, 832
Eam1104I	CTCTTC	5 cut(s)	60, 389, 681, 856, 939
EarI	CTCTTC	5 cut(s)	60, 389, 681, 856, 939
Eco130I	CCWWGG	1 cut(s)	366
Eco57I	CTGAAG	2 cut(s)	189, 747
Eco88I	CYCGRG	1 cut(s)	147
Eco91I	GGTNACC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	96, 172, 300
EcoT14I	CCWWGG	1 cut(s)	366
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	278, 370, 443, 536
FaqI	GGGAC	3 cut(s)	198, 398, 890
FatI	CATG	4 cut(s)	274, 366, 439, 532
Fnu4HI	GCNGC	3 cut(s)	518, 695, 974
FokI	GGATG	4 cut(s)	183, 383, 550, 1024
Fsp4HI	GCNGC	3 cut(s)	518, 695, 974
FspBI	CTAG	1 cut(s)	852
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	3 cut(s)	518, 695, 974
GsuI	CTGGAG	2 cut(s)	195, 761
HapII	CCGG	5 cut(s)	416, 468, 485, 497, 542
HhaI	GCGC	1 cut(s)	541
Hin1II	CATG	4 cut(s)	278, 370, 443, 536
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	925
HindII	GTYRAC	1 cut(s)	925
HindIII	AAGCTT	2 cut(s)	774, 986
HinfI	GANTC	7 cut(s)	5, 38, 152, 362, 382, 464, 870
HpaII	CCGG	5 cut(s)	416, 468, 485, 497, 542
HphI	GGTGA	3 cut(s)	185, 275, 737
Hpy166II	GTNNAC	5 cut(s)	57, 78, 229, 925, 955
Hpy188III	TCNNGA	5 cut(s)	245, 386, 503, 740, 1052
Hpy8I	GTNNAC	5 cut(s)	57, 78, 229, 925, 955
HpyAV	CCTTC	3 cut(s)	210, 418, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	477, 538, 1025
HpyF3I	CTNAG	3 cut(s)	720, 884, 997
Hsp92II	CATG	4 cut(s)	278, 370, 443, 536
HspAI	GCGC	1 cut(s)	539
KroI	GCCGGC	1 cut(s)	484
KroNI	GCCGGC	1 cut(s)	486
Kzo9I	GATC	2 cut(s)	744, 832
LmnI	GCTCC	3 cut(s)	176, 981, 1024
Lsp1109I	GCAGC	3 cut(s)	529, 681, 985
LweI	GCATC	3 cut(s)	426, 526, 907
MaeI	CTAG	1 cut(s)	852
MaeIII	GTNAC	2 cut(s)	254, 263
MalI	GATC	2 cut(s)	746, 834
MboI	GATC	2 cut(s)	744, 832
MhlI	GDGCHC	1 cut(s)	704
MluCI	AATT	8 cut(s)	103, 217, 307, 322, 331, 512, 658, 671
MmeI	TCCRAC	1 cut(s)	591
Mph1103I	ATGCAT	1 cut(s)	441
MroNI	GCCGGC	1 cut(s)	484
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	2 cut(s)	789, 992
MslI	CAYNNNNRTG	4 cut(s)	273, 434, 444, 1078
MspI	CCGG	5 cut(s)	416, 468, 485, 497, 542
MspR9I	CCNGG	4 cut(s)	98, 174, 302, 416
MvaI	CCWGG	3 cut(s)	98, 174, 302
MwoI	GCNNNNNNNGC	3 cut(s)	477, 538, 1025
NaeI	GCCGGC	1 cut(s)	486
NciI	CCSGG	1 cut(s)	416
NcoI	CCATGG	1 cut(s)	366
NdeII	GATC	2 cut(s)	744, 832
NgoMIV	GCCGGC	1 cut(s)	484
NlaIII	CATG	4 cut(s)	278, 370, 443, 536
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	263
NsiI	ATGCAT	1 cut(s)	441
PasI	CCCWGGG	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	408
PdiI	GCCGGC	1 cut(s)	486
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	7 cut(s)	5, 38, 152, 362, 382, 464, 870
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	3 cut(s)	519, 696, 975
PsiI	TTATAA	1 cut(s)	1032
Psp6I	CCWGG	3 cut(s)	96, 172, 300
PspEI	GGTNACC	1 cut(s)	263
PspGI	CCWGG	3 cut(s)	96, 172, 300
PspN4I	GGNNCC	1 cut(s)	501
PstI	CTGCAG	2 cut(s)	699, 1062
RseI	CAYNNNNRTG	4 cut(s)	273, 434, 444, 1078
SaqAI	TTAA	2 cut(s)	789, 992
SatI	GCNGC	3 cut(s)	518, 695, 974
Sau3AI	GATC	2 cut(s)	744, 832
ScrFI	CCNGG	4 cut(s)	98, 174, 302, 416
SduI	GDGCHC	1 cut(s)	704
SfaNI	GCATC	3 cut(s)	426, 526, 907
SfcI	CTRYAG	3 cut(s)	695, 893, 1058
SmiMI	CAYNNNNRTG	4 cut(s)	273, 434, 444, 1078
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	8 cut(s)	103, 217, 307, 322, 331, 512, 658, 671
SspI	AATATT	2 cut(s)	169, 349
SspMI	CTAG	1 cut(s)	852
StyD4I	CCNGG	4 cut(s)	96, 172, 300, 414
StyI	CCWWGG	1 cut(s)	366
TaqI	TCGA	2 cut(s)	599, 1053
TasI	AATT	8 cut(s)	103, 217, 307, 322, 331, 512, 658, 671
TfiI	GAWTC	7 cut(s)	5, 38, 152, 362, 382, 464, 870
Tru1I	TTAA	2 cut(s)	789, 992
Tru9I	TTAA	2 cut(s)	789, 992
TscAI	CASTG	2 cut(s)	345, 478
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	517, 694, 973
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	4 cut(s)	96, 395, 696, 768
TspRI	CASTG	2 cut(s)	345, 478
XapI	RAATTY	2 cut(s)	103, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	1 cut(s)	852
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.