RLG00000010566

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002575
Physical Location & Seq
Reverse (-)
2674200 .. 2675625
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010566

Sequence Viewer

Length: 1137 bp
ATGGAGTCTCTTGGTGTTTTTGCTGAGGGGGATCAATGGGAGTGCTTCAGCAGATTGTTCTCTAACGAAGATCAAGAGCTAGATTTCACACCGCATTTTCTTGGTCATGAAGGTTCATTTCCTTTCCAACACAATGAGGGATTCAATTTTGAAACCCCAACCACCCTCTTCCCCAATCCTGAAGCTGGTGATGAAATGGGATTGAACAGGTTCAATCAGAGCTTCTTTCATTCTTTAGACTCTCTCAGCTCTAATATGCACTATCTTCCTCAAGAAAATAATTCTGGTTATAGTGCTAGCAGTGGCATTTTTACTGCCATTCTGAACCCGGAGAATTACTACTATGGTGGTAACTCTTGCCATACCCCAATGAGTAATGACATCTCTACATCCGTTGATGTTTCTATGACTGGAAATATTGAGAGCAATTTTGGGTCATTCATCCCGGCATTTAGTGACATTGGGATGGAAGGAGCTGTCTGTAACACTGAATATTCCGGCAGTGGCAGAATGGGCTTTTCAGATGACAGTCGACCACCAAAGGAACTGCAACTCAAGAGGATGCATGATGCGGCGCCAGAGAAATCCAACACTGAAGATGCATCTGAGAGTAATCCAAAGAAGAAACCCCGTTTGTCAAAAGATAAAACTAAGAAGAGTAATGCGAGGTCAAAGAAGGGCCAAAAGGCTAACTCAGATCTGAAGTTGAAAGATGAAGACGAGAGTAACACAGGAGTGGACAGACAGAGCTCTAGCTCCTATAACAGCTCTGAGGATGACAATGCTTCTCAAGAAACCAATGGGGCAGGAGAAATTTCAGACCCCAAATCATCATCAGCCCTTAACTTGAATGGCAAGACAAGAGCCAATAGAGGGTCTGCAACTGATCCCCAGAGCCTCTATGCTAGGAAACGAAGGGAGAGAATCAACGAGCGATTGAGAGTCCTGCAGAATCTTGTCCCTAATGGAACAAAGGTTGACATCAGCACAATGCTGGAAGAGGCAGTCCATTATGTCAAGTTTCTACAGCTCCAGATCAAGCTTTTGAGCTCCGATGACATGTGGATGTATGCTCCTATTGCTTATAACGGGATGGATATCGGTCTCGACCTGCATAAGATGTCTCCACTTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

379

Amino Acids

41.98

Weight (kDa)

5.05

Isoelectric Point (pI)

54.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 303 - 343 2.4e-08 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 304 - 350 7.4e-06 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1086
Acc36I ACCTGC 1 cut(s) 1119
AccB1I GGYRCC 1 cut(s) 574
AccI GTMKAC 1 cut(s) 532
AciI CCGC 2 cut(s) 92, 572
AclWI GGATC 2 cut(s) 39, 881
AcsI RAATTY 1 cut(s) 813
AcuI CTGAAG 4 cut(s) 31, 201, 615, 722
AcyI GRCGYC 1 cut(s) 575
AfiI CCNNNNNNNGG 2 cut(s) 185, 873
AflIII ACRYGT 1 cut(s) 1059
AgsI TTSAA 6 cut(s) 145, 152, 205, 214, 709, 850
AleI CACNNNNGTG 1 cut(s) 734
Alw21I GWGCWC 2 cut(s) 752, 1052
Alw26I GTCTC 3 cut(s) 12, 1109, 1128
AlwI GGATC 2 cut(s) 39, 881
AoxI GGCC 1 cut(s) 679
ApoI RAATTY 1 cut(s) 813
Asp700I GAANNNNTTC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 1 cut(s) 679
AsuC2I CCSGG 2 cut(s) 329, 446
AsuHPI GGTGA 1 cut(s) 200
AsuNHI GCTAGC 1 cut(s) 296
BanI GGYRCC 1 cut(s) 574
BanII GRGCYC 2 cut(s) 752, 1052
BbsI GAAGAC 1 cut(s) 723
Bbv12I GWGCWC 2 cut(s) 752, 1052
BbvCI CCTCAGC 1 cut(s) 24
BccI CCATC 2 cut(s) 460, 1087
BcnI CCSGG 2 cut(s) 329, 446
BcoDI GTCTC 3 cut(s) 12, 1109, 1128
BfaI CTAG 4 cut(s) 80, 297, 753, 906
BfmI CTRYAG 2 cut(s) 947, 1025
BfoI RGCGCY 1 cut(s) 578
BfuAI ACCTGC 1 cut(s) 1119
BglII AGATCT 1 cut(s) 697
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 2 cut(s) 329, 446
BmgT120I GGNCC 1 cut(s) 679
BmiI GGNNCC 1 cut(s) 576
BmrFI CCNGG 2 cut(s) 329, 446
BmsI GCATC 4 cut(s) 552, 559, 589, 611
BmtI GCTAGC 1 cut(s) 300
BpiI GAAGAC 1 cut(s) 723
BpmI CTGGAG 1 cut(s) 1016
Bpu10I CCTNAGC 1 cut(s) 24
BpuEI CTTGAG 3 cut(s) 255, 539, 774
BpuMI CCSGG 2 cut(s) 329, 446
BsaBI GATNNNNATC 1 cut(s) 1097
BsaHI GRCGYC 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 1109
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 873
Bse1I ACTGG 1 cut(s) 415
Bse8I GATNNNNATC 1 cut(s) 1097
BseGI GGATG 7 cut(s) 389, 441, 471, 567, 781, 1071, 1098
BseJI GATNNNNATC 1 cut(s) 1097
BseLI CCNNNNNNNGG 2 cut(s) 185, 873
BseMII CTCAG 5 cut(s) 15, 259, 597, 708, 762
BseNI ACTGG 1 cut(s) 415
BshFI GGCC 1 cut(s) 681
BshNI GGYRCC 1 cut(s) 574
BsiHKAI GWGCWC 2 cut(s) 752, 1052
BsiSI CCGG 3 cut(s) 329, 446, 498
BslFI GGGAC 1 cut(s) 944
BslI CCNNNNNNNGG 2 cut(s) 185, 873
BsmAI GTCTC 3 cut(s) 12, 1109, 1128
BsmFI GGGAC 1 cut(s) 944
BsnI GGCC 1 cut(s) 681
Bso31I GGTCTC 1 cut(s) 1109
Bsp1286I GDGCHC 2 cut(s) 752, 1052
Bsp143I GATC 5 cut(s) 31, 70, 697, 886, 1035
BspACI CCGC 2 cut(s) 92, 572
BspANI GGCC 1 cut(s) 681
BspCNI CTCAG 5 cut(s) 16, 258, 598, 707, 763
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 576
BspMAI CTGCAG 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 1119
BspOI GCTAGC 1 cut(s) 300
BspPI GGATC 2 cut(s) 39, 881
BspT107I GGYRCC 1 cut(s) 574
BspTNI GGTCTC 1 cut(s) 1109
BsrI ACTGG 1 cut(s) 415
BssMI GATC 5 cut(s) 31, 70, 697, 886, 1035
BssNI GRCGYC 1 cut(s) 575
Bst4CI ACNGT 1 cut(s) 530
Bst6I CTCTTC 3 cut(s) 173, 650, 993
BstACI GRCGYC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 6 cut(s) 24, 245, 606, 651, 694, 771
BstF5I GGATG 7 cut(s) 389, 441, 471, 567, 781, 1071, 1098
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 5 cut(s) 34, 73, 700, 889, 1038
BstMAI GTCTC 3 cut(s) 12, 1109, 1128
BstMBI GATC 5 cut(s) 31, 70, 697, 886, 1035
BstMWI GCNNNNNNNGC 2 cut(s) 513, 1079
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 2 cut(s) 327, 444
BstSFI CTRYAG 2 cut(s) 947, 1025
BstV2I GAAGAC 1 cut(s) 723
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
BsuRI GGCC 1 cut(s) 681
BtsCI GGATG 7 cut(s) 389, 441, 471, 567, 781, 1071, 1098
BtsI GCAGTG 2 cut(s) 307, 508
BtsIMutI CAGTG 4 cut(s) 307, 486, 508, 591
BveI ACCTGC 1 cut(s) 1119
Cac8I GCNNGC 1 cut(s) 298
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 577
Cfr13I GGNCC 1 cut(s) 679
CviAII CATG 3 cut(s) 107, 566, 1060
DdeI CTNAG 6 cut(s) 24, 245, 606, 651, 694, 771
DinI GGCGCC 1 cut(s) 576
DpnI GATC 5 cut(s) 33, 72, 699, 888, 1037
DpnII GATC 5 cut(s) 31, 70, 697, 886, 1035
Eam1104I CTCTTC 3 cut(s) 173, 650, 993
EarI CTCTTC 3 cut(s) 173, 650, 993
Ecl136II GAGCTC 2 cut(s) 750, 1050
Eco24I GRGCYC 2 cut(s) 752, 1052
Eco31I GGTCTC 1 cut(s) 1109
Eco32I GATATC 1 cut(s) 1099
Eco53kI GAGCTC 2 cut(s) 750, 1050
Eco57I CTGAAG 4 cut(s) 31, 201, 615, 722
EcoICRI GAGCTC 2 cut(s) 750, 1050
EcoRV GATATC 1 cut(s) 1099
EcoT22I ATGCAT 2 cut(s) 567, 604
EcoT38I GRGCYC 2 cut(s) 752, 1052
EgeI GGCGCC 1 cut(s) 576
EheI GGCGCC 1 cut(s) 576
FaeI CATG 3 cut(s) 110, 569, 1063
FaqI GGGAC 1 cut(s) 944
FatI CATG 3 cut(s) 106, 565, 1059
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 7 cut(s) 376, 428, 478, 574, 788, 1078, 1105
FriOI GRGCYC 2 cut(s) 752, 1052
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 4 cut(s) 80, 297, 753, 906
GlaI GCGC 1 cut(s) 576
GluI GCNGC 1 cut(s) 573
GsuI CTGGAG 1 cut(s) 1016
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 1 cut(s) 681
HapII CCGG 3 cut(s) 329, 446, 498
HhaI GCGC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 575
Hin1II CATG 3 cut(s) 110, 569, 1063
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HincII GTYRAC 2 cut(s) 533, 979
HindII GTYRAC 2 cut(s) 533, 979
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 6 cut(s) 5, 141, 239, 924, 942, 952
HpaII CCGG 3 cut(s) 329, 446, 498
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 3 cut(s) 533, 739, 979
Hpy188I TCNGA 9 cut(s) 219, 324, 523, 607, 697, 702, 772, 820, 1054
Hpy188III TCNNGA 8 cut(s) 74, 107, 179, 272, 556, 791, 1033, 1106
Hpy8I GTNNAC 3 cut(s) 533, 739, 979
HpyAV CCTTC 4 cut(s) 104, 464, 670, 909
HpyCH4III ACNGT 1 cut(s) 530
HpyCH4V TGCA 7 cut(s) 259, 550, 565, 602, 881, 949, 1114
HpyF10VI GCNNNNNNNGC 2 cut(s) 513, 1079
HpyF3I CTNAG 6 cut(s) 24, 245, 606, 651, 694, 771
Hsp92I GRCGYC 1 cut(s) 575
Hsp92II CATG 3 cut(s) 110, 569, 1063
HspAI GCGC 1 cut(s) 575
KasI GGCGCC 1 cut(s) 574
Kzo9I GATC 5 cut(s) 31, 70, 697, 886, 1035
LmnI GCTCC 5 cut(s) 473, 761, 1035, 1055, 1078
LweI GCATC 4 cut(s) 552, 559, 589, 611
MaeI CTAG 4 cut(s) 80, 297, 753, 906
MaeIII GTNAC 4 cut(s) 350, 455, 482, 725
MalI GATC 5 cut(s) 33, 72, 699, 888, 1037
MboI GATC 5 cut(s) 31, 70, 697, 886, 1035
MboII GAAGA 8 cut(s) 80, 160, 257, 608, 634, 667, 728, 1010
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 2 cut(s) 752, 1052
MluCI AATT 5 cut(s) 145, 280, 334, 427, 813
Mly113I GGCGCC 1 cut(s) 575
MlyI GAGTC 3 cut(s) 14, 233, 951
MmeI TCCRAC 2 cut(s) 151, 612
Mph1103I ATGCAT 2 cut(s) 567, 604
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 843
MslI CAYNNNNRTG 4 cut(s) 464, 734, 1064, 1132
MspI CCGG 3 cut(s) 329, 446, 498
MspR9I CCNGG 2 cut(s) 329, 446
MwoI GCNNNNNNNGC 2 cut(s) 513, 1079
NarI GGCGCC 1 cut(s) 575
NciI CCSGG 2 cut(s) 329, 446
NdeII GATC 5 cut(s) 31, 70, 697, 886, 1035
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 3 cut(s) 110, 569, 1063
NlaIV GGNNCC 1 cut(s) 576
NmuCI GTSAC 1 cut(s) 455
NsiI ATGCAT 2 cut(s) 567, 604
NspI RCATGY 1 cut(s) 1063
OliI CACNNNNGTG 1 cut(s) 734
PagI TCATGA 1 cut(s) 106
PciI ACATGT 1 cut(s) 1059
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 3 cut(s) 141, 924, 952
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 3 cut(s) 13, 233, 950
PluTI GGCGCC 1 cut(s) 578
PpsI GAGTC 3 cut(s) 13, 233, 950
PscI ACATGT 1 cut(s) 1059
PsiI TTATAA 1 cut(s) 1086
Psp124BI GAGCTC 2 cut(s) 752, 1052
PspN4I GGNNCC 1 cut(s) 576
PspPI GGNCC 1 cut(s) 679
PstI CTGCAG 1 cut(s) 951
PsuI RGATCY 1 cut(s) 697
RseI CAYNNNNRTG 4 cut(s) 464, 734, 1064, 1132
SacI GAGCTC 2 cut(s) 752, 1052
SalI GTCGAC 1 cut(s) 531
SaqAI TTAA 1 cut(s) 843
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 5 cut(s) 31, 70, 697, 886, 1035
Sau96I GGNCC 1 cut(s) 679
SchI GAGTC 3 cut(s) 14, 233, 951
ScrFI CCNGG 2 cut(s) 329, 446
SduI GDGCHC 2 cut(s) 752, 1052
SfaNI GCATC 4 cut(s) 552, 559, 589, 611
SfcI CTRYAG 2 cut(s) 947, 1025
SfoI GGCGCC 1 cut(s) 576
SmiMI CAYNNNNRTG 4 cut(s) 464, 734, 1064, 1132
SmlI CTYRAG 3 cut(s) 270, 554, 789
SmoI CTYRAG 3 cut(s) 270, 554, 789
Sse9I AATT 5 cut(s) 145, 280, 334, 427, 813
SsiI CCGC 2 cut(s) 92, 572
SspDI GGCGCC 1 cut(s) 574
SspI AATATT 2 cut(s) 418, 494
SspMI CTAG 4 cut(s) 80, 297, 753, 906
SstI GAGCTC 2 cut(s) 752, 1052
StyD4I CCNGG 2 cut(s) 327, 444
TaaI ACNGT 1 cut(s) 530
TaqI TCGA 2 cut(s) 532, 1107
TaqII GACCGA 1 cut(s) 1091
TasI AATT 5 cut(s) 145, 280, 334, 427, 813
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 3 cut(s) 141, 924, 952
Tru1I TTAA 1 cut(s) 843
Tru9I TTAA 1 cut(s) 843
TscAI CASTG 4 cut(s) 307, 493, 508, 598
TseFI GTSAC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 455
TspDTI ATGAA 6 cut(s) 105, 123, 207, 218, 430, 729
TspGWI ACGGA 1 cut(s) 382
TspRI CASTG 4 cut(s) 307, 493, 508, 598
XapI RAATTY 1 cut(s) 813
XceI RCATGY 1 cut(s) 1063
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 4 cut(s) 80, 297, 753, 906
Zsp2I ATGCAT 2 cut(s) 567, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.