Rh4CG081200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0002575
Physical Location & Seq
Forward (+)
14480271 .. 14480948
678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG081200.1

Sequence Viewer

Length: 678 bp
ATGGAGCAAACCGGAGCTATTCCAGAGGGAGAATGGATCTCTCACACTCTTGGTGGGATGTTCACTGGTGATCAGGAGGCAGATTTCATGATGATCCAGTTGCTTGAGAATTATCCAATAATTTCAGACATGGAAATCCCGGATGGTTTTTGGCCTGGTAATGAAGAATCAACATTGATGGACATTTCAGGCAACTATGGAAGTCTAGTTTATTCTTTAGAAACAACTAATTCTCATGTGAACGGAAGCTCACAAGAGACTGATCTCGTTCCCACTTCAAGCGATCCATTCTATAACTTGGGTGGTTCTCGCTCAATGACGTTGGTAACAAAGAACGTTAACAGCAATGACAATTCTATGTCGACTGACTTTTGTGCTGCGGAGGCGAAAAACACTAGTTTGTATCTCATTCAAGGAGAAAGTGATGCGATTATTGACTGCAATGTGGAAGAGCCCGGCAGGTACCAGCGTGAAGAACCAGCCAGCAATCATGGAAATAGTAACCCCATCTCCAAGAGTAACTCTATGAAGAGATCGAAAATTTCAGAAAATTTGAGTGCATATAAAACAACCGCATTAACTGTTTTTCTTGCACATTTCCAAATCAATGCTTGCTTGATTATTCATAATTCACTAGCTGATACAAAATCAATGCATGCTGTAGGATCAAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0032989 GO:0034641 GO:0034645 GO:0034654 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090558 GO:0090627 GO:0097159 GO:0097659 GO:0099402 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1990837 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

225

Amino Acids

24.57

Weight (kDa)

4.44

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 450
Acc65I GGTACC 1 cut(s) 462
AccB1I GGYRCC 1 cut(s) 462
AccI GTMKAC 1 cut(s) 362
AciI CCGC 2 cut(s) 380, 573
AclI AACGTT 1 cut(s) 336
AclWI GGATC 4 cut(s) 44, 88, 278, 673
AcsI RAATTY 2 cut(s) 540, 550
AfaI GTAC 1 cut(s) 464
AgsI TTSAA 2 cut(s) 279, 413
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 154
AluBI AGCT 3 cut(s) 17, 249, 638
AluI AGCT 3 cut(s) 17, 249, 638
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 4 cut(s) 44, 88, 278, 673
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 377
ApoI RAATTY 2 cut(s) 540, 550
Asp718I GGTACC 1 cut(s) 462
AsuC2I CCSGG 2 cut(s) 140, 456
AsuHPI GGTGA 1 cut(s) 80
BaeI ACNNNNGTAYC 2 cut(s) 454, 487
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 364
BccI CCATC 3 cut(s) 137, 172, 515
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 2 cut(s) 140, 456
BcoDI GTCTC 1 cut(s) 251
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 3 cut(s) 206, 396, 635
BfmI CTRYAG 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 450
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
Bme1390I CCNGG 3 cut(s) 140, 156, 456
BmiI GGNNCC 1 cut(s) 464
BmrFI CCNGG 3 cut(s) 140, 156, 456
BmsI GCATC 1 cut(s) 415
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 2 cut(s) 140, 456
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bse1I ACTGG 2 cut(s) 70, 97
Bse3DI GCAATG 2 cut(s) 352, 448
BseBI CCWGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 63, 148
BseMI GCAATG 2 cut(s) 352, 448
BseNI ACTGG 2 cut(s) 70, 97
BseXI GCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 462
BsiSI CCGG 3 cut(s) 12, 140, 456
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 456
Bsp143I GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
BspACI CCGC 2 cut(s) 380, 573
BspANI GGCC 1 cut(s) 154
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 464
BspMI ACCTGC 1 cut(s) 450
BspPI GGATC 4 cut(s) 44, 88, 278, 673
BspQI GCTCTTC 1 cut(s) 444
BspT107I GGYRCC 1 cut(s) 462
BsrDI GCAATG 2 cut(s) 352, 448
BsrI ACTGG 2 cut(s) 70, 97
BssMI GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 2 cut(s) 444, 524
BstC8I GCNNGC 3 cut(s) 484, 613, 657
BstF5I GGATG 2 cut(s) 63, 148
BstKTI GATC 7 cut(s) 39, 73, 96, 265, 286, 536, 668
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
BstMWI GCNNNNNNNGC 1 cut(s) 383
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 3 cut(s) 138, 154, 454
BstSFI CTRYAG 1 cut(s) 660
BstV1I GCAGC 1 cut(s) 364
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 63, 148
BtsIMutI CAGTG 1 cut(s) 63
BveI ACCTGC 1 cut(s) 450
Cac8I GCNNGC 3 cut(s) 484, 613, 657
CciI TCATGA 1 cut(s) 87
Csp6I GTAC 1 cut(s) 463
CviAII CATG 5 cut(s) 88, 130, 236, 491, 656
CviJI RGCY 6 cut(s) 17, 154, 249, 454, 482, 638
CviKI_1 RGCY 6 cut(s) 17, 154, 249, 454, 482, 638
CviQI GTAC 1 cut(s) 463
DpnI GATC 7 cut(s) 38, 72, 95, 264, 285, 535, 667
DpnII GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
Eam1104I CTCTTC 2 cut(s) 444, 524
EarI CTCTTC 2 cut(s) 444, 524
Eco24I GRGCYC 1 cut(s) 456
EcoRII CCWGG 1 cut(s) 154
EcoT22I ATGCAT 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 456
FaeI CATG 5 cut(s) 91, 133, 239, 494, 659
FatI CATG 5 cut(s) 87, 129, 235, 490, 655
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 362
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 70, 155
FriOI GRGCYC 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 3 cut(s) 206, 396, 635
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 1 cut(s) 154
HapII CCGG 3 cut(s) 12, 140, 456
Hin1II CATG 5 cut(s) 91, 133, 239, 494, 659
HincII GTYRAC 2 cut(s) 340, 363
HindII GTYRAC 2 cut(s) 340, 363
HinfI GANTC 1 cut(s) 167
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 3 cut(s) 12, 140, 456
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 4 cut(s) 63, 241, 340, 363
Hpy188I TCNGA 2 cut(s) 127, 547
Hpy188III TCNNGA 3 cut(s) 23, 74, 88
Hpy8I GTNNAC 4 cut(s) 63, 241, 340, 363
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 2 cut(s) 320, 336
HpyCH4V TGCA 4 cut(s) 441, 560, 593, 655
HpyF10VI GCNNNNNNNGC 1 cut(s) 383
HpySE526I ACGT 2 cut(s) 320, 336
Hsp92II CATG 5 cut(s) 91, 133, 239, 494, 659
KpnI GGTACC 1 cut(s) 466
Ksp22I TGATCA 1 cut(s) 70
KspAI GTTAAC 1 cut(s) 340
Kzo9I GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 2 cut(s) 4, 14
Lsp1109I GCAGC 1 cut(s) 364
LweI GCATC 1 cut(s) 415
MaeI CTAG 3 cut(s) 206, 396, 635
MaeII ACGT 2 cut(s) 320, 336
MaeIII GTNAC 3 cut(s) 325, 500, 518
MalI GATC 7 cut(s) 38, 72, 95, 264, 285, 535, 667
MboI GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
MboII GAAGA 4 cut(s) 176, 461, 485, 541
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 456
MluCI AATT 7 cut(s) 109, 120, 229, 352, 540, 550, 628
MnlI CCTC 3 cut(s) 19, 70, 376
Mph1103I ATGCAT 1 cut(s) 657
MseI TTAA 2 cut(s) 339, 578
MspI CCGG 3 cut(s) 12, 140, 456
MspR9I CCNGG 3 cut(s) 140, 156, 456
MvaI CCWGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 383
NciI CCSGG 2 cut(s) 140, 456
NdeII GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
NlaIII CATG 5 cut(s) 91, 133, 239, 494, 659
NlaIV GGNNCC 1 cut(s) 464
NsiI ATGCAT 1 cut(s) 657
NspI RCATGY 1 cut(s) 659
PaeI GCATGC 1 cut(s) 659
PagI TCATGA 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 444
PfeI GAWTC 1 cut(s) 167
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 1 cut(s) 379
Psp1406I AACGTT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SalI GTCGAC 1 cut(s) 361
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 2 cut(s) 339, 578
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 7 cut(s) 36, 70, 93, 262, 283, 533, 665
ScrFI CCNGG 3 cut(s) 140, 156, 456
SduI GDGCHC 1 cut(s) 456
SetI ASST 6 cut(s) 19, 251, 323, 339, 464, 640
SfaNI GCATC 1 cut(s) 415
SfcI CTRYAG 1 cut(s) 660
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 395
SphI GCATGC 1 cut(s) 659
Sse9I AATT 7 cut(s) 109, 120, 229, 352, 540, 550, 628
SsiI CCGC 2 cut(s) 380, 573
SspMI CTAG 3 cut(s) 206, 396, 635
StyD4I CCNGG 3 cut(s) 138, 154, 454
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 2 cut(s) 323, 339
TaqI TCGA 2 cut(s) 362, 536
TasI AATT 7 cut(s) 109, 120, 229, 352, 540, 550, 628
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 339, 578
Tru9I TTAA 2 cut(s) 339, 578
TscAI CASTG 1 cut(s) 70
TseI GCWGC 1 cut(s) 377
TspDTI ATGAA 4 cut(s) 76, 177, 542, 614
TspGWI ACGGA 1 cut(s) 258
TspRI CASTG 1 cut(s) 70
XapI RAATTY 2 cut(s) 540, 550
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 362
XspI CTAG 3 cut(s) 206, 396, 635
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.