AT1G30140
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006437
Physical Location & Seq
Forward (+)
10598542 .. 10599696
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G30140.1

Sequence Viewer

Length: 669 bp
ATGATGGAAGATCCACCACGTGGTAAAGAAAAAGGTCCATATAACCAATGGACTCCCGACGAAACCGACGTGTTGATCGAATTAATCAGACAAAATTGGCGTGATTCTAGTGGAATTATCGGCAAGCTAACAGTGGAGAGTAAATTATTACCTGCTCTGAATAAACGTCTTGGCTGCAACAAGAATCACAAGAACTATATGAGCAGATTGAAGTTTTTGAAAAACTTATACCAAAGTTACTTGGATTTAAAACGTTTTAGTTCGGGATTTGGTTGGGATCCTGAAACAAAAAAGTTTACAGCTCCTGATGAGGTGTGGAGAGATTATTTAAAGGCACATCCAAATCATAAACATATGCAAACTGAATCGATTGATCATTTTGAAGATCTCCAAATTATATTTGGAGATGTTGTAGCAACTGGTAGTTTTGCTGTTGGGATGAGTGATAGTACATGTCCTCGTATCTACACAGTTGGTGAAAGGAGTCAAGGAAAAGAGACGGTGAATCAAGATGAGAACATTGAGGAGGTTTATGAATTTTCATTTCAACACCCATCATCAGCAGAATATAGTACATCACCATTTACTTTTGATCCTACCACGAGAGGTCGATCTGAAAAGCTTCTTCCTAGGAAAAGAACTAAGGGTGGAAGATGCAATAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

222

Amino Acids

25.62

Weight (kDa)

7.02

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 109 1.7e-13 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 20
AclI AACGTT 1 cut(s) 253
AclWI GGATC 4 cut(s) 5, 272, 285, 587
AcsI RAATTY 1 cut(s) 536
AcvI CACGTG 1 cut(s) 20
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 2 cut(s) 451, 574
AfiI CCNNNNNNNGG 1 cut(s) 20
AflIII ACRYGT 2 cut(s) 69, 452
AgsI TTSAA 4 cut(s) 211, 220, 383, 548
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 3 cut(s) 127, 302, 622
AluI AGCT 3 cut(s) 127, 302, 622
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 4 cut(s) 5, 272, 285, 587
AlwNI CAGNNNCTG 1 cut(s) 305
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 536
AseI ATTAAT 1 cut(s) 83
Asp700I GAANNNNTTC 1 cut(s) 621
AspA2I CCTAGG 1 cut(s) 629
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 3 cut(s) 488, 514, 570
AvaII GGWCC 1 cut(s) 35
AvrII CCTAGG 1 cut(s) 629
BamHI GGATCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 601
BbrPI CACGTG 1 cut(s) 20
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 562
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 2 cut(s) 108, 630
BfuAI ACCTGC 1 cut(s) 160
BglII AGATCT 1 cut(s) 385
BisI GCNGC 1 cut(s) 175
BlnI CCTAGG 1 cut(s) 629
BlsI GCNGC 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 35
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 644
Bsa29I ATCGAT 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 396, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 424
BseCI ATCGAT 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 629
BseGI GGATG 2 cut(s) 337, 444
BseLI CCNNNNNNNGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 539
BseXI GCAGC 1 cut(s) 161
BshVI ATCGAT 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 491
BsmBI CGTCTC 1 cut(s) 491
Bsp143I GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
BspDI ATCGAT 1 cut(s) 368
BspLI GGNNCC 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 4 cut(s) 5, 272, 285, 587
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 629
BssMI GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
BssSI CACGAG 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 629
Bst2BI CACGAG 1 cut(s) 601
Bst4CI ACNGT 3 cut(s) 133, 472, 502
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 337, 444
BstKTI GATC 7 cut(s) 13, 78, 280, 376, 388, 595, 614
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
BstNSI RCATGY 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 161
BstX2I RGATCY 3 cut(s) 10, 277, 385
BstYI RGATCY 3 cut(s) 10, 277, 385
Bsu15I ATCGAT 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 368
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 2 cut(s) 337, 444
BtsIMutI CAGTG 1 cut(s) 138
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 125
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 35
ClaI ATCGAT 1 cut(s) 368
Csp6I GTAC 2 cut(s) 450, 573
CviAII CATG 1 cut(s) 453
CviJI RGCY 4 cut(s) 127, 174, 302, 622
CviKI_1 RGCY 4 cut(s) 127, 174, 302, 622
CviQI GTAC 2 cut(s) 450, 573
DdeI CTNAG 1 cut(s) 642
DpnI GATC 7 cut(s) 12, 77, 279, 375, 387, 594, 613
DpnII GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
DraI TTTAAA 2 cut(s) 249, 330
DraIII CACNNNGTG 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 629
Eco47I GGWCC 1 cut(s) 35
Eco72I CACGTG 1 cut(s) 20
EcoT14I CCWWGG 1 cut(s) 629
ErhI CCWWGG 1 cut(s) 629
Esp3I CGTCTC 1 cut(s) 491
FaeI CATG 1 cut(s) 456
FatI CATG 1 cut(s) 452
FauNDI CATATG 1 cut(s) 354
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 2 cut(s) 324, 451
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 2 cut(s) 108, 630
GluI GCNGC 1 cut(s) 175
Hin1II CATG 1 cut(s) 456
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 6 cut(s) 52, 104, 184, 365, 484, 505
HphI GGTGA 3 cut(s) 488, 514, 570
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 89, 159, 616
Hpy188III TCNNGA 5 cut(s) 56, 264, 281, 305, 509
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 2 cut(s) 62, 71
HpyCH4III ACNGT 3 cut(s) 133, 472, 502
HpyCH4IV ACGT 4 cut(s) 19, 69, 166, 253
HpyCH4V TGCA 3 cut(s) 177, 358, 657
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 4 cut(s) 19, 69, 166, 253
Hsp92II CATG 1 cut(s) 456
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 4 cut(s) 165, 294, 318, 405
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 644
MaeI CTAG 2 cut(s) 108, 630
MaeII ACGT 4 cut(s) 19, 69, 166, 253
MaeIII GTNAC 1 cut(s) 236
MalI GATC 7 cut(s) 12, 77, 279, 375, 387, 594, 613
MboI GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
MboII GAAGA 4 cut(s) 20, 395, 617, 663
MflI RGATCY 3 cut(s) 10, 277, 385
MluCI AATT 6 cut(s) 80, 94, 114, 143, 393, 536
MlyI GAGTC 2 cut(s) 46, 493
MnlI CCTC 5 cut(s) 304, 468, 517, 520, 599
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 3 cut(s) 83, 248, 329
NdeI CATATG 1 cut(s) 354
NdeII GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
NlaIII CATG 1 cut(s) 456
NlaIV GGNNCC 1 cut(s) 279
NspI RCATGY 1 cut(s) 456
PciI ACATGT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 75
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 4 cut(s) 104, 184, 365, 505
PflMI CCANNNNNTGG 1 cut(s) 20
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 2 cut(s) 46, 492
PmaCI CACGTG 1 cut(s) 20
PmlI CACGTG 1 cut(s) 20
PpsI GAGTC 2 cut(s) 46, 492
Ppu21I YACGTR 1 cut(s) 20
PscI ACATGT 1 cut(s) 452
PshBI ATTAAT 1 cut(s) 83
Psp1406I AACGTT 1 cut(s) 253
PspCI CACGTG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 279
PspPI GGNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 3 cut(s) 10, 277, 385
RsaI GTAC 2 cut(s) 451, 574
RsaNI GTAC 2 cut(s) 450, 573
SaqAI TTAA 3 cut(s) 83, 248, 329
SatI GCNGC 1 cut(s) 175
Sau3AI GATC 7 cut(s) 10, 75, 277, 373, 385, 592, 611
Sau96I GGNCC 1 cut(s) 35
SchI GAGTC 2 cut(s) 46, 493
SfaNI GCATC 1 cut(s) 644
SinI GGWCC 1 cut(s) 35
Sse9I AATT 6 cut(s) 80, 94, 114, 143, 393, 536
SspMI CTAG 2 cut(s) 108, 630
StyI CCWWGG 1 cut(s) 629
TaaI ACNGT 3 cut(s) 133, 472, 502
TaiI ACGT 4 cut(s) 22, 72, 169, 256
TaqI TCGA 3 cut(s) 78, 368, 610
TasI AATT 6 cut(s) 80, 94, 114, 143, 393, 536
TatI WGTACW 2 cut(s) 449, 572
TfiI GAWTC 4 cut(s) 104, 184, 365, 505
Tru1I TTAA 3 cut(s) 83, 248, 329
Tru9I TTAA 3 cut(s) 83, 248, 329
TscAI CASTG 1 cut(s) 138
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 531, 549
TspRI CASTG 1 cut(s) 138
Van91I CCANNNNNTGG 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 35
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 1 cut(s) 536
XceI RCATGY 1 cut(s) 456
XcmI CCANNNNNNNNNTGG 2 cut(s) 45, 398
XmaJI CCTAGG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 2 cut(s) 108, 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.