Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006437

Physical Location & Seq

Genomic Coordinates Forward (+)

24280129 .. 24281132

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G229800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTGTTAGAACTAATGGTTGATGCTGCCAACCGTGGATGGCGCGATTCTAATGGTTTGCTAAGCAAGCAAATAGTAGAAAGCAAGATACCTCCTGTTCTTAATGCAAAACTTGGATGCCAAAAAACTTGTCATCAATATCAGAGCCGTTTGAAATGGTTTAAGACAAGATATCACAGTTTTACTCAGCTTATGCATCATAGTTCTGGATTTGGGTGGGACTCCGTCTCAAAGAAATTCACAGCTATCGAAGAAGTATGGCAAGATTACTTTAAGTCTCATCCAAGTCAAGTGCATCTTCAAAGAGATACATTTGCAGACTATGAGGATTTGGTAATTGCAATTGGCAATGGAACAGCTGCTGGGAAAAACTCAATTGGACTTGGTGATGATACTGATGCTAGAACGTATGAAGTTGGAGAAAGTAGACCTACTAGATTGCAGGATACCAATGAGGCATTTGTACCAAGTCAAAATGAAACATCATACCAATCTTTGTCGTTTGGTAATTTTACTTCATCACCTTTTCTGGACACAAATTTGGAGGCTCCATTAGAAAAGCTCCCTCAAAGAAAGAAAGCTAAAACTGAGTCTGAAGCAAATAATAATTCAGTTGAGACCATAACTCGAGCTGAACTGGTAGAAAAAGTTTATGTGGGCATGGATTCAATTGCTGCAATTACCACTGAAATTCGAGGAATGCATAGCCTAATGGAGAAAAGAGAGAAAGAGAGAGAGAAAACCAACAATGTTTGGGATGCTATCAAAGAGACTTCGAACTTGGATAATCGTGCTCATTACAAAGCACTTGGGCTGGTTCATAAGTTGGGAATGAAAAATGCATTCCTGAAAATGTTACATGAAGAGTGCTCAGAGTGGATACTATACAATATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

300

Amino Acids

34.1

Weight (kDa)

6.57

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30140 AT1G30140 AT2G29880 AT5G27260
malus_domestica	MD03G1206200.v1.1 MD03G1212300.v1.1 MD05G1104000.v1.1 MD05G1188000.v1.1 MD06G1083900.v1.1 MD08G1125600.v1.1 MD12G1017200.v1.1 MD16G1269500.v1.1
prunus_persica	Prupe.1G130600_v2.0.a1 Prupe.1G170700_v2.0.a1 Prupe.1G229800_v2.0.a1 Prupe.2G168600_v2.0.a1 Prupe.3G122800_v2.0.a1 Prupe.4G156100_v2.0.a1 Prupe.4G168300_v2.0.a1 Prupe.6G020000_v2.0.a1 Prupe.6G133700_v2.0.a1 Prupe.6G164800_v2.0.a1 Prupe.7G073100_v2.0.a1 Prupe.7G105100_v2.0.a1
pyrus_communis	pycom02g17640 pycom08g12750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	427
AccII	CGCG	1 cut(s)	45
AcsI	RAATTY	3 cut(s)	236, 538, 690
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	1 cut(s)	465
AgsI	TTSAA	3 cut(s)	154, 302, 669
AluBI	AGCT	6 cut(s)	190, 245, 359, 562, 581, 632
AluI	AGCT	6 cut(s)	190, 245, 359, 562, 581, 632
Alw21I	GWGCWC	2 cut(s)	796, 872
Alw26I	GTCTC	4 cut(s)	232, 282, 611, 764
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	26, 359, 674
ApoI	RAATTY	3 cut(s)	236, 538, 690
ArsI	GACNNNNNNTTYG	2 cut(s)	115, 147
AspLEI	GCGC	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	398, 513
AsuII	TTCGAA	1 cut(s)	776
AvaI	CYCGRG	1 cut(s)	627
BarI	GAAGNNNNNNTAC	2 cut(s)	499, 531
Bbv12I	GWGCWC	2 cut(s)	796, 872
BbvI	GCAGC	3 cut(s)	13, 346, 661
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	132
BciVI	GTATCC	2 cut(s)	439, 873
BcoDI	GTCTC	4 cut(s)	232, 282, 611, 764
BfaI	CTAG	2 cut(s)	402, 435
BfuI	GTATCC	2 cut(s)	439, 873
BisI	GCNGC	3 cut(s)	27, 360, 675
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	3 cut(s)	28, 361, 676
BmeT110I	CYCGRG	1 cut(s)	627
BmiI	GGNNCC	1 cut(s)	549
BmsI	GCATC	6 cut(s)	13, 107, 205, 304, 388, 748
Bpu1102I	GCTNAGC	1 cut(s)	62
Bpu14I	TTCGAA	1 cut(s)	776
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	642
Bse3DI	GCAATG	1 cut(s)	355
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	4 cut(s)	44, 122, 280, 763
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	200, 579, 885
BseNI	ACTGG	1 cut(s)	642
BseXI	GCAGC	3 cut(s)	13, 346, 661
BseYI	CCCAGC	1 cut(s)	362
Bsh1236I	CGCG	1 cut(s)	45
BsiHKAI	GWGCWC	2 cut(s)	796, 872
BsiHKCI	CYCGRG	1 cut(s)	627
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	4 cut(s)	232, 282, 611, 764
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	2 cut(s)	705, 842
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	627
Bsp119I	TTCGAA	1 cut(s)	776
Bsp1286I	GDGCHC	2 cut(s)	796, 872
Bsp1720I	GCTNAGC	1 cut(s)	62
BspCNI	CTCAG	3 cut(s)	199, 580, 884
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	776
BspTNI	GGTCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	355
BsrI	ACTGG	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	34
Bst4CI	ACNGT	2 cut(s)	35, 179
Bst6I	CTCTTC	1 cut(s)	858
BstBI	TTCGAA	1 cut(s)	776
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	4 cut(s)	62, 186, 588, 871
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	4 cut(s)	44, 122, 280, 763
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	45
BstMAI	GTCTC	4 cut(s)	232, 282, 611, 764
BstMWI	GCNNNNNNNGC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	13, 346, 661
BsuI	GTATCC	2 cut(s)	439, 873
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	4 cut(s)	44, 122, 280, 763
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	2 cut(s)	661, 860
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	4 cut(s)	62, 186, 588, 871
Eam1104I	CTCTTC	1 cut(s)	858
EarI	CTCTTC	1 cut(s)	858
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	627
EcoRV	GATATC	1 cut(s)	173
EcoT22I	ATGCAT	3 cut(s)	198, 705, 844
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	2 cut(s)	664, 863
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	660, 859
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	3 cut(s)	27, 360, 675
FokI	GGATG	4 cut(s)	51, 129, 267, 770
Fsp4HI	GCNGC	3 cut(s)	27, 360, 675
FspBI	CTAG	2 cut(s)	402, 435
GlaI	GCGC	1 cut(s)	44
GluI	GCNGC	3 cut(s)	27, 360, 675
GsaI	CCCAGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	45
Hin1II	CATG	2 cut(s)	664, 863
Hin6I	GCGC	1 cut(s)	43
HinP1I	GCGC	1 cut(s)	43
HinfI	GANTC	4 cut(s)	47, 221, 590, 665
HphI	GGTGA	2 cut(s)	398, 513
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	144, 595, 874
Hpy188III	TCNNGA	3 cut(s)	207, 530, 847
Hpy8I	GTNNAC	1 cut(s)	428
HpyCH4III	ACNGT	2 cut(s)	35, 179
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	9 cut(s)	107, 196, 295, 317, 341, 442, 677, 703, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	67
HpyF3I	CTNAG	4 cut(s)	62, 186, 588, 871
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	2 cut(s)	664, 863
HspAI	GCGC	1 cut(s)	43
LmnI	GCTCC	2 cut(s)	553, 567
LpnPI	CCDG	8 cut(s)	108, 192, 348, 428, 515, 623, 800, 860
Lsp1109I	GCAGC	3 cut(s)	13, 346, 661
LweI	GCATC	6 cut(s)	13, 107, 205, 304, 388, 748
MaeI	CTAG	2 cut(s)	402, 435
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	1 cut(s)	855
MboII	GAAGA	3 cut(s)	263, 290, 875
MfeI	CAATTG	3 cut(s)	342, 375, 669
MhlI	GDGCHC	2 cut(s)	796, 872
MlyI	GAGTC	2 cut(s)	215, 599
MmeI	TCCRAC	1 cut(s)	397
MnlI	CCTC	6 cut(s)	102, 319, 448, 538, 576, 689
Mph1103I	ATGCAT	3 cut(s)	198, 705, 844
MseI	TTAA	3 cut(s)	102, 162, 273
MspA1I	CMGCKG	1 cut(s)	359
MunI	CAATTG	3 cut(s)	342, 375, 669
Mva1269I	GAATGC	2 cut(s)	705, 842
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	664, 863
NlaIV	GGNNCC	1 cut(s)	549
NsiI	ATGCAT	3 cut(s)	198, 705, 844
NspV	TTCGAA	1 cut(s)	776
PaeR7I	CTCGAG	1 cut(s)	627
PctI	GAATGC	2 cut(s)	705, 842
PfeI	GAWTC	2 cut(s)	47, 665
PflFI	GACNNNGTC	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	28, 361, 676
PleI	GAGTC	2 cut(s)	215, 598
PpsI	GAGTC	2 cut(s)	215, 598
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	549
PspXI	VCTCGAGB	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	362
PsyI	GACNNNGTC	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	359
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
SaqAI	TTAA	3 cut(s)	102, 162, 273
SatI	GCNGC	3 cut(s)	27, 360, 675
SchI	GAGTC	2 cut(s)	215, 599
SduI	GDGCHC	2 cut(s)	796, 872
SfaNI	GCATC	6 cut(s)	13, 107, 205, 304, 388, 748
Sfr274I	CTCGAG	1 cut(s)	627
SfuI	TTCGAA	1 cut(s)	776
SlaI	CTCGAG	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	627
SmoI	CTYRAG	1 cut(s)	627
SspMI	CTAG	2 cut(s)	402, 435
TaaI	ACNGT	2 cut(s)	35, 179
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	4 cut(s)	249, 628, 694, 776
TfiI	GAWTC	2 cut(s)	47, 665
Tru1I	TTAA	3 cut(s)	102, 162, 273
Tru9I	TTAA	3 cut(s)	102, 162, 273
TscAI	CASTG	1 cut(s)	691
TseI	GCWGC	3 cut(s)	26, 359, 674
TspDTI	ATGAA	6 cut(s)	426, 492, 507, 809, 848, 876
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	691
Tth111I	GACNNNGTC	1 cut(s)	224
XapI	RAATTY	3 cut(s)	236, 538, 690
XhoI	CTCGAG	1 cut(s)	627
XmiI	GTMKAC	1 cut(s)	427
XspI	CTAG	2 cut(s)	402, 435
Zsp2I	ATGCAT	3 cut(s)	198, 705, 844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.