MD05G1188000.v1.1
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006437
Physical Location & Seq
Reverse (-)
31603983 .. 31604472
490 bp
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UTR
Exon/CDS
Intron
MD05G1188000.v1.1.491

Sequence Viewer

Length: 375 bp
ATGACAAGAATACTTCCGGCACTTAATGAAAGACTAAAGTGTAATAAAACTTATAAGCATTGCACAAGTCGAATGAGATATTTTAAGAAAGAATATGAAAAGTATAGTCAGCTTATGAGAAGCAACTCTGGCTTTGGGTGGGATGCAAACACAAAGAGATTTGTTGCTGATGACGAAGTTTGGGAAGAATACTTTAGAGCCCACCCAGACCAAAGAAGCATTCGTAAAAAATCTTGTGATGACTTTGAAGATTTGCAAATAGTACTTGGGGATGCAACTGCTACTGGAAAACACTCATTGGGATTGGGTGAGGAAACTGATGCAAGAACTTTTGTAGTGGAAGATAGACAAGGTGGAATAGAGGAAGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

125

Amino Acids

14.54

Weight (kDa)

5.69

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 2 - 64 1.7e-14 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 54
AfaI GTAC 1 cut(s) 264
AgsI TTSAA 1 cut(s) 248
AjuI GAANNNNNNNTTGG 2 cut(s) 204, 236
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
AsuHPI GGTGA 1 cut(s) 320
BanII GRGCYC 1 cut(s) 202
BmcAI AGTACT 1 cut(s) 264
BmsI GCATC 3 cut(s) 133, 262, 310
Bse1I ACTGG 1 cut(s) 289
Bse3DI GCAATG 1 cut(s) 58
BseGI GGATG 2 cut(s) 148, 277
BseMI GCAATG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 289
BsiSI CCGG 1 cut(s) 17
BsmI GAATGC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 202
BsrDI GCAATG 1 cut(s) 58
BsrI ACTGG 1 cut(s) 289
BstF5I GGATG 2 cut(s) 148, 277
BstMWI GCNNNNNNNGC 1 cut(s) 129
BtsCI GGATG 2 cut(s) 148, 277
Csp6I GTAC 1 cut(s) 263
CviJI RGCY 3 cut(s) 112, 132, 200
CviKI_1 RGCY 3 cut(s) 112, 132, 200
CviQI GTAC 1 cut(s) 263
Eco24I GRGCYC 1 cut(s) 202
EcoT38I GRGCYC 1 cut(s) 202
FaiI YATR 4 cut(s) 54, 96, 105, 116
FokI GGATG 2 cut(s) 155, 284
FriOI GRGCYC 1 cut(s) 202
HapII CCGG 1 cut(s) 17
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 320
HpyCH4V TGCA 5 cut(s) 63, 146, 256, 275, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
LpnPI CCDG 4 cut(s) 30, 114, 219, 270
LweI GCATC 3 cut(s) 133, 262, 310
MboII GAAGA 3 cut(s) 197, 260, 353
MhlI GDGCHC 1 cut(s) 202
MnlI CCTC 2 cut(s) 304, 355
MseI TTAA 2 cut(s) 24, 84
MspI CCGG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 129
PctI GAATGC 1 cut(s) 219
PsiI TTATAA 1 cut(s) 54
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 24, 84
ScaI AGTACT 1 cut(s) 264
SduI GDGCHC 1 cut(s) 202
SetI ASST 2 cut(s) 114, 355
SfaNI GCATC 3 cut(s) 133, 262, 310
TaqI TCGA 1 cut(s) 70
TatI WGTACW 1 cut(s) 262
Tru1I TTAA 2 cut(s) 24, 84
Tru9I TTAA 2 cut(s) 24, 84
TspDTI ATGAA 2 cut(s) 42, 111
ZrmI AGTACT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.