Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006437

Physical Location & Seq

Genomic Coordinates Forward (+)

28186080 .. 28187217

Gene Structure 1138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1206200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGGAGATTCACAACAAGAAAAGGGAAAAGGAAACTATAATCAATGGTCCGTGGAAGAGAGCAGCATGTTGTTGCAACTACTTGTTGAGGCCGTAAAAAATGGATGGCGTGATGCTAATGGCATAATAAGCAAGCAGACTATAGAAGCCAAAATTGTTCTTGTGCTCAATGAAAAACTTGGGTGTCAAAAAACTCAAGATCATGTTAAGAACCGTGTGAAAACATTGAGGGGTCGATATCAATCAATATGTCAACTTTTTAGGCATAGTTCGGGATTTGGTTGGGACCCCATCACAAAGAAGTTCACGGCTAGTGATGAAGTATGGGAAGGCTTCCTTAGGTCCCACCCAAAGAGTCAAGGTATTCGCAAAGAGACATTTACGGACTATGAAGATTTGATGACTGTATTTGGCGATGGAACAGCTAAAGGAAATAACTCAATTGGATTGGGTGATGATACTGATGCCACAACATATACAGTCGAAGAAAGTAGGCCAATTAGAGTAAACGAATTTCCTTCACCTGATGAGAGCTTTGAGCAACTTGATCCATTATTTCAAAATCCATCATATGCATCATCTTTCCTAAATGCAAATTTGGAGGGTTCCGCTCCAACACCCGTACAAAAGCTACTTCCAAGGAAAAGATCTCGACCTGAGTCTGAGCTAAAATCAAATGGGACCACCCCTCACATCGTTCTTATAGAAAAAGTTTCCCTTGGAATGGATTCGATTGCTGCAATTGCTACTGAAATTCAAGGAATTCATAGCATAATGGAGAAAAGAGAAAAAGCTAGAGATAAAATGGAAAAGGAGAAAAAAGAAGAAGAGAAAAACAACAATCTTTGGGATGCTATCAAAGAGACTCCAAACTTGGATCCTCCCGTTCGTTACAAAGCAATTGCATTGGTTCAACAGTTGGGAATGAAAAAAGAGTTCTTGAAAATGACACCAGAAGAACGCTCAGAGTGGATAAAATACAATATGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

331

Amino Acids

37.5

Weight (kDa)

6.3

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	15 - 110	5.9e-21	Myb/SANT-like DNA-binding domain
At2g29880_C	PF24769	282 - 328	6e-25	At2g29880 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30140 AT1G30140 AT2G29880 AT5G27260
malus_domestica	MD03G1206200.v1.1 MD03G1212300.v1.1 MD05G1104000.v1.1 MD05G1188000.v1.1 MD06G1083900.v1.1 MD08G1125600.v1.1 MD12G1017200.v1.1 MD16G1269500.v1.1
prunus_persica	Prupe.1G130600_v2.0.a1 Prupe.1G170700_v2.0.a1 Prupe.1G229800_v2.0.a1 Prupe.2G168600_v2.0.a1 Prupe.3G122800_v2.0.a1 Prupe.4G156100_v2.0.a1 Prupe.4G168300_v2.0.a1 Prupe.6G020000_v2.0.a1 Prupe.6G133700_v2.0.a1 Prupe.6G164800_v2.0.a1 Prupe.7G073100_v2.0.a1 Prupe.7G105100_v2.0.a1
pyrus_communis	pycom02g17640 pycom08g12750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	611
AciI	CCGC	1 cut(s)	609
AclWI	GGATC	3 cut(s)	542, 872, 885
AcsI	RAATTY	4 cut(s)	512, 595, 753, 762
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	560, 758, 914, 943
AluBI	AGCT	5 cut(s)	425, 534, 631, 667, 794
AluI	AGCT	5 cut(s)	425, 534, 631, 667, 794
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	2 cut(s)	368, 857
AlwI	GGATC	3 cut(s)	542, 872, 885
AoxI	GGCC	2 cut(s)	90, 494
ApeKI	GCWGC	2 cut(s)	63, 737
ApoI	RAATTY	4 cut(s)	512, 595, 753, 762
Asp700I	GAANNNNTTC	1 cut(s)	727
AspS9I	GGNCC	4 cut(s)	48, 286, 342, 681
AsuHPI	GGTGA	2 cut(s)	464, 513
AvaII	GGWCC	4 cut(s)	48, 286, 342, 681
AxyI	CCTNAGG	1 cut(s)	338
BamHI	GGATCC	1 cut(s)	877
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	2 cut(s)	75, 724
BccI	CCATC	4 cut(s)	99, 299, 410, 574
BceAI	ACGGC	2 cut(s)	77, 324
BcoDI	GTCTC	2 cut(s)	368, 857
BfaI	CTAG	2 cut(s)	312, 795
BfmI	CTRYAG	1 cut(s)	141
BglII	AGATCT	1 cut(s)	647
BisI	GCNGC	2 cut(s)	64, 738
BlsI	GCNGC	2 cut(s)	65, 739
Bme18I	GGWCC	4 cut(s)	48, 286, 342, 681
BmgT120I	GGNCC	4 cut(s)	48, 286, 342, 681
BmiI	GGNNCC	6 cut(s)	287, 288, 344, 607, 682, 879
BmsI	GCATC	4 cut(s)	103, 454, 584, 841
BoxI	GACNNNNGTC	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	51, 638, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse21I	CCTNAGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	241
BseDI	CCNNGG	3 cut(s)	51, 638, 718
BseGI	GGATG	2 cut(s)	110, 856
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMII	CTCAG	3 cut(s)	648, 654, 978
BseXI	GCAGC	2 cut(s)	75, 724
BshFI	GGCC	2 cut(s)	92, 496
BsiHKAI	GWGCWC	1 cut(s)	168
BslFI	GGGAC	3 cut(s)	299, 328, 694
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	2 cut(s)	368, 857
BsmFI	GGGAC	3 cut(s)	299, 328, 694
BsnI	GGCC	2 cut(s)	92, 496
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	199, 547, 647, 877
BspACI	CCGC	1 cut(s)	609
BspANI	GGCC	2 cut(s)	92, 496
BspCNI	CTCAG	3 cut(s)	649, 655, 977
BspLI	GGNNCC	6 cut(s)	287, 288, 344, 607, 682, 879
BspPI	GGATC	3 cut(s)	542, 872, 885
BsrBI	CCGCTC	1 cut(s)	611
BssECI	CCNNGG	3 cut(s)	51, 638, 718
BssMI	GATC	4 cut(s)	199, 547, 647, 877
BssT1I	CCWWGG	2 cut(s)	638, 718
Bst4CI	ACNGT	4 cut(s)	215, 406, 481, 918
Bst6I	CTCTTC	2 cut(s)	51, 822
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	338, 657, 663, 964
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	2 cut(s)	110, 856
BstKTI	GATC	4 cut(s)	202, 550, 650, 880
BstMAI	GTCTC	2 cut(s)	368, 857
BstMBI	GATC	4 cut(s)	199, 547, 647, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 743
BstNSI	RCATGY	1 cut(s)	70
BstPAI	GACNNNNGTC	1 cut(s)	658
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	75, 724
BstX2I	RGATCY	2 cut(s)	647, 877
BstYI	RGATCY	2 cut(s)	647, 877
Bsu36I	CCTNAGG	1 cut(s)	338
BsuRI	GGCC	2 cut(s)	92, 496
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	2 cut(s)	110, 856
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	4 cut(s)	48, 286, 342, 681
Csp6I	GTAC	1 cut(s)	623
CviAII	CATG	2 cut(s)	67, 203
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	4 cut(s)	338, 657, 663, 964
DpnI	GATC	4 cut(s)	201, 549, 649, 879
DpnII	GATC	4 cut(s)	199, 547, 647, 877
Eam1104I	CTCTTC	2 cut(s)	51, 822
EarI	CTCTTC	2 cut(s)	51, 822
Eco130I	CCWWGG	2 cut(s)	638, 718
Eco32I	GATATC	1 cut(s)	239
Eco47I	GGWCC	4 cut(s)	48, 286, 342, 681
Eco81I	CCTNAGG	1 cut(s)	338
EcoO109I	RGGNCCY	2 cut(s)	286, 342
EcoRI	GAATTC	1 cut(s)	762
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	2 cut(s)	638, 718
EcoT22I	ATGCAT	1 cut(s)	577
ErhI	CCWWGG	2 cut(s)	638, 718
FaeI	CATG	2 cut(s)	70, 206
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 702, 734
FaqI	GGGAC	3 cut(s)	299, 328, 694
FatI	CATG	2 cut(s)	66, 202
FauNDI	CATATG	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	64, 738
FokI	GGATG	2 cut(s)	117, 863
Fsp4HI	GCNGC	2 cut(s)	64, 738
FspBI	CTAG	2 cut(s)	312, 795
GluI	GCNGC	2 cut(s)	64, 738
HaeIII	GGCC	2 cut(s)	92, 496
Hin1II	CATG	2 cut(s)	70, 206
HincII	GTYRAC	1 cut(s)	254
HindII	GTYRAC	1 cut(s)	254
HinfI	GANTC	5 cut(s)	8, 355, 659, 728, 865
HphI	GGTGA	2 cut(s)	464, 513
Hpy166II	GTNNAC	3 cut(s)	254, 306, 508
Hpy188I	TCNGA	2 cut(s)	664, 967
Hpy188III	TCNNGA	4 cut(s)	197, 273, 651, 940
Hpy8I	GTNNAC	3 cut(s)	254, 306, 508
HpyAV	CCTTC	2 cut(s)	323, 528
HpyCH4III	ACNGT	4 cut(s)	215, 406, 481, 918
HpyCH4V	TGCA	5 cut(s)	76, 575, 593, 740, 905
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 743
HpyF3I	CTNAG	4 cut(s)	338, 657, 663, 964
Hsp92II	CATG	2 cut(s)	70, 206
KflI	GGGWCCC	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	199, 547, 647, 877
LmnI	GCTCC	1 cut(s)	616
LpnPI	CCDG	3 cut(s)	537, 669, 966
Lsp1109I	GCAGC	2 cut(s)	75, 724
LweI	GCATC	4 cut(s)	103, 454, 584, 841
MaeI	CTAG	2 cut(s)	312, 795
MaeIII	GTNAC	1 cut(s)	890
MalI	GATC	4 cut(s)	201, 549, 649, 879
MbiI	CCGCTC	1 cut(s)	611
MboI	GATC	4 cut(s)	199, 547, 647, 877
MboII	GAAGA	6 cut(s)	68, 404, 497, 836, 839, 968
MfeI	CAATTG	3 cut(s)	441, 741, 900
MflI	RGATCY	2 cut(s)	647, 877
MhlI	GDGCHC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	364, 668, 859
MmeI	TCCRAC	1 cut(s)	638
MnlI	CCTC	5 cut(s)	82, 222, 595, 699, 891
Mph1103I	ATGCAT	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	727
MseI	TTAA	1 cut(s)	207
MunI	CAATTG	3 cut(s)	441, 741, 900
MwoI	GCNNNNNNNGC	2 cut(s)	129, 743
NdeI	CATATG	1 cut(s)	571
NdeII	GATC	4 cut(s)	199, 547, 647, 877
NlaIII	CATG	2 cut(s)	70, 206
NlaIV	GGNNCC	6 cut(s)	287, 288, 344, 607, 682, 879
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	1 cut(s)	70
PdmI	GAANNNNTTC	1 cut(s)	727
PfeI	GAWTC	2 cut(s)	8, 728
PkrI	GCNGC	2 cut(s)	65, 739
PleI	GAGTC	3 cut(s)	363, 667, 859
PpsI	GAGTC	3 cut(s)	363, 667, 859
PpuMI	RGGWCCY	2 cut(s)	286, 342
PshAI	GACNNNNGTC	1 cut(s)	658
Psp5II	RGGWCCY	2 cut(s)	286, 342
PspN4I	GGNNCC	6 cut(s)	287, 288, 344, 607, 682, 879
PspPI	GGNCC	4 cut(s)	48, 286, 342, 681
PspPPI	RGGWCCY	2 cut(s)	286, 342
PsuI	RGATCY	2 cut(s)	647, 877
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	2 cut(s)	64, 738
Sau3AI	GATC	4 cut(s)	199, 547, 647, 877
Sau96I	GGNCC	4 cut(s)	48, 286, 342, 681
SchI	GAGTC	3 cut(s)	364, 668, 859
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	9 cut(s)	344, 364, 427, 526, 536, 633, 658, 669, 796
SfaNI	GCATC	4 cut(s)	103, 454, 584, 841
SfcI	CTRYAG	1 cut(s)	141
SinI	GGWCC	4 cut(s)	48, 286, 342, 681
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
SsiI	CCGC	1 cut(s)	609
SspMI	CTAG	2 cut(s)	312, 795
StyI	CCWWGG	2 cut(s)	638, 718
TaaI	ACNGT	4 cut(s)	215, 406, 481, 918
TaqI	TCGA	4 cut(s)	235, 483, 652, 731
TfiI	GAWTC	2 cut(s)	8, 728
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	2 cut(s)	63, 737
TspDTI	ATGAA	5 cut(s)	186, 333, 405, 755, 941
TspGWI	ACGGA	2 cut(s)	40, 398
VpaK11BI	GGWCC	4 cut(s)	48, 286, 342, 681
XapI	RAATTY	4 cut(s)	512, 595, 753, 762
XceI	RCATGY	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	727
XspI	CTAG	2 cut(s)	312, 795
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.