Prupe.2G168600_v2.0.a1
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0006437
Physical Location & Seq
Forward (+)
21651120 .. 21652238
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G168600.1

Sequence Viewer

Length: 972 bp
ATGGGAGATTCACAACAAGGAAAAGGAAAAATATCTTATAACCTGTGGACCTCAAAAGAGAACAATATGCTATTAGAACTAATGGTTGATGCTGCCAACCGTGGATGGTGCGATTCTAATGGTTTGCTAATCAAGCAAATAGTAAAAAGCAAGATACTTCCTAGCCGTTTGAAATGGTTTAAGGCAAGATATCACAGTTTTACTCAGCTTATGCGTCATAGTTCTGGATTTGGGTGGGACTCCATCTCAAAGAAATTCACAGCTACTGAAGAAGTATGGCAAGATTACTTTAAATCTCATCCAAGTCAAGTGCATCTTCAAAGAGATACATTTGCAGACTATGAGGATTTGGTAATTGCAATTGGCAATGGAACAGCTGCTGGGAAAAACTCAATTGGACTTGGTGATGATACTAATGCTAGAACGTATGAAGTTGGAGAAAGTAGGACTACTAGATTGCAGGATACCAATGAGGCATTTGTACCAAGTCAAAATGAAACATCATACCAATCTTTGTCGTCTGGTAATTTTATTTCATCACCTTTTGTGGACACAAATTTGGAGGCTCCATTAGAAAAGCTCCCTCAAAGAAAGAAACCTAAAACTGAGTCTGAAGCAAATAATTCAGTTGAGACCTTAACTCGAGCTGAACTGGTTGAAAAAGTTTATGTGGGCATGGATTCAATTGCTGCAATTACCACTGAAATTCGAGGAATGCATAGCCTAATGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAACCAACAATGTTTGGGATGCTATCAAGGAGACTCCGAACTTGGATAATCGGGCTCGTTACAAAGCACTTGGGCTGGTTCATAAGTTGGGAATGAAAAATGCATTCTTGAAAATGTTACTTAAAGAGTGCTCAGAGTGGATACTATACAATATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

324

Amino Acids

37.17

Weight (kDa)

7.04

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AcsI RAATTY 3 cut(s) 254, 556, 705
AcuI CTGAAG 2 cut(s) 288, 633
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 1 cut(s) 730
AgsI TTSAA 5 cut(s) 172, 320, 659, 684, 922
AluBI AGCT 5 cut(s) 208, 263, 377, 580, 647
AluI AGCT 5 cut(s) 208, 263, 377, 580, 647
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 2 cut(s) 626, 836
AlwNI CAGNNNCTG 2 cut(s) 266, 380
Ama87I CYCGRG 1 cut(s) 642
ApeKI GCWGC 3 cut(s) 92, 377, 689
ApoI RAATTY 3 cut(s) 254, 556, 705
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 416, 531
AvaI CYCGRG 1 cut(s) 642
AvaII GGWCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 868
Bbv12I GWGCWC 1 cut(s) 944
BbvI GCAGC 3 cut(s) 79, 364, 676
BccI CCATC 2 cut(s) 99, 251
BceAI ACGGC 1 cut(s) 150
BciVI GTATCC 2 cut(s) 457, 945
BcoDI GTCTC 2 cut(s) 626, 836
BfaI CTAG 3 cut(s) 162, 420, 453
BfuI GTATCC 2 cut(s) 457, 945
BisI GCNGC 3 cut(s) 93, 378, 690
BlsI GCNGC 3 cut(s) 94, 379, 691
Bme18I GGWCC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 642
BmgT120I GGNCC 1 cut(s) 48
BmiI GGNNCC 1 cut(s) 567
BmsI GCATC 3 cut(s) 79, 322, 820
BsaI GGTCTC 1 cut(s) 626
BsaJI CCNNGG 1 cut(s) 100
Bsc4I CCNNNNNNNGG 1 cut(s) 730
Bse1I ACTGG 1 cut(s) 657
Bse3DI GCAATG 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 110, 298, 835
BseLI CCNNNNNNNGG 1 cut(s) 730
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 3 cut(s) 218, 597, 957
BseNI ACTGG 1 cut(s) 657
BseXI GCAGC 3 cut(s) 79, 364, 676
BseYI CCCAGC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 642
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 730
BsmAI GTCTC 2 cut(s) 626, 836
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 2 cut(s) 720, 914
Bso31I GGTCTC 1 cut(s) 626
BsoBI CYCGRG 1 cut(s) 642
Bsp1286I GDGCHC 2 cut(s) 868, 944
BspCNI CTCAG 3 cut(s) 217, 598, 956
BspLI GGNNCC 1 cut(s) 567
BspTNI GGTCTC 1 cut(s) 626
BsrDI GCAATG 1 cut(s) 373
BsrI ACTGG 1 cut(s) 657
BssECI CCNNGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 101, 197
BstDEI CTNAG 3 cut(s) 204, 606, 943
BstDSI CCRYGG 1 cut(s) 100
BstF5I GGATG 3 cut(s) 110, 298, 835
BstMAI GTCTC 2 cut(s) 626, 836
BstMWI GCNNNNNNNGC 1 cut(s) 133
BstV1I GCAGC 3 cut(s) 79, 364, 676
BsuI GTATCC 2 cut(s) 457, 945
BtgI CCRYGG 1 cut(s) 100
BtsCI GGATG 3 cut(s) 110, 298, 835
BtsIMutI CAGTG 1 cut(s) 699
CaiI CAGNNNCTG 2 cut(s) 266, 380
Cfr13I GGNCC 1 cut(s) 48
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 482
CviAII CATG 1 cut(s) 676
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 3 cut(s) 204, 606, 943
DraI TTTAAA 1 cut(s) 292
Eco24I GRGCYC 1 cut(s) 868
Eco31I GGTCTC 1 cut(s) 626
Eco32I GATATC 1 cut(s) 191
Eco47I GGWCC 1 cut(s) 48
Eco57I CTGAAG 2 cut(s) 288, 633
Eco88I CYCGRG 1 cut(s) 642
EcoRV GATATC 1 cut(s) 191
EcoT22I ATGCAT 2 cut(s) 720, 916
EcoT38I GRGCYC 1 cut(s) 868
FaeI CATG 1 cut(s) 679
FalI AAGNNNNNCTT 2 cut(s) 300, 332
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 675
Fnu4HI GCNGC 3 cut(s) 93, 378, 690
FokI GGATG 3 cut(s) 117, 285, 842
FriOI GRGCYC 1 cut(s) 868
Fsp4HI GCNGC 3 cut(s) 93, 378, 690
FspBI CTAG 3 cut(s) 162, 420, 453
GluI GCNGC 3 cut(s) 93, 378, 690
GsaI CCCAGC 1 cut(s) 384
HgaI GACGC 1 cut(s) 203
Hin1II CATG 1 cut(s) 679
HinfI GANTC 6 cut(s) 8, 113, 239, 608, 680, 844
HphI GGTGA 2 cut(s) 416, 531
Hpy166II GTNNAC 2 cut(s) 48, 550
Hpy188I TCNGA 3 cut(s) 613, 849, 946
Hpy188III TCNNGA 2 cut(s) 225, 919
Hpy8I GTNNAC 2 cut(s) 48, 550
HpyCH4III ACNGT 2 cut(s) 101, 197
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 7 cut(s) 313, 335, 359, 460, 692, 718, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 133
HpyF3I CTNAG 3 cut(s) 204, 606, 943
HpySE526I ACGT 1 cut(s) 425
Hsp92II CATG 1 cut(s) 679
LmnI GCTCC 2 cut(s) 571, 585
LpnPI CCDG 7 cut(s) 56, 210, 366, 446, 507, 638, 872
Lsp1109I GCAGC 3 cut(s) 79, 364, 676
LweI GCATC 3 cut(s) 79, 322, 820
MaeI CTAG 3 cut(s) 162, 420, 453
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 2 cut(s) 869, 927
MboII GAAGA 2 cut(s) 281, 308
MfeI CAATTG 3 cut(s) 360, 393, 684
MhlI GDGCHC 2 cut(s) 868, 944
MlyI GAGTC 3 cut(s) 233, 617, 838
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 6 cut(s) 61, 337, 466, 556, 594, 704
Mph1103I ATGCAT 2 cut(s) 720, 916
MseI TTAA 4 cut(s) 180, 291, 638, 933
MspA1I CMGCKG 1 cut(s) 377
MunI CAATTG 3 cut(s) 360, 393, 684
Mva1269I GAATGC 2 cut(s) 720, 914
MwoI GCNNNNNNNGC 1 cut(s) 133
NlaIII CATG 1 cut(s) 679
NlaIV GGNNCC 1 cut(s) 567
NsiI ATGCAT 2 cut(s) 720, 916
PaeR7I CTCGAG 1 cut(s) 642
PctI GAATGC 2 cut(s) 720, 914
PfeI GAWTC 3 cut(s) 8, 113, 680
PkrI GCNGC 3 cut(s) 94, 379, 691
PleI GAGTC 3 cut(s) 233, 616, 838
PpsI GAGTC 3 cut(s) 233, 616, 838
PsiI TTATAA 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 48
PspXI VCTCGAGB 1 cut(s) 642
PstNI CAGNNNCTG 2 cut(s) 266, 380
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
SaqAI TTAA 4 cut(s) 180, 291, 638, 933
SatI GCNGC 3 cut(s) 93, 378, 690
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 3 cut(s) 233, 617, 838
SduI GDGCHC 2 cut(s) 868, 944
SfaNI GCATC 3 cut(s) 79, 322, 820
Sfr274I CTCGAG 1 cut(s) 642
SinI GGWCC 1 cut(s) 48
SlaI CTCGAG 1 cut(s) 642
SmlI CTYRAG 1 cut(s) 642
SmoI CTYRAG 1 cut(s) 642
SspMI CTAG 3 cut(s) 162, 420, 453
TaaI ACNGT 2 cut(s) 101, 197
TaiI ACGT 1 cut(s) 428
TaqI TCGA 2 cut(s) 643, 709
TfiI GAWTC 3 cut(s) 8, 113, 680
Tru1I TTAA 4 cut(s) 180, 291, 638, 933
Tru9I TTAA 4 cut(s) 180, 291, 638, 933
TscAI CASTG 1 cut(s) 706
TseI GCWGC 3 cut(s) 92, 377, 689
TspDTI ATGAA 5 cut(s) 444, 510, 525, 881, 920
TspRI CASTG 1 cut(s) 706
VpaK11BI GGWCC 1 cut(s) 48
XapI RAATTY 3 cut(s) 254, 556, 705
XhoI CTCGAG 1 cut(s) 642
XspI CTAG 3 cut(s) 162, 420, 453
Zsp2I ATGCAT 2 cut(s) 720, 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.