AT5G27260
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006437
Physical Location & Seq
Forward (+)
9603943 .. 9604930
988 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27260.1

Sequence Viewer

Length: 912 bp
ATGGGAGATTCACAACCCAAAAAAAGAAAAAAGGGGGATTATAATCCGTGGTCTCCAGAGGAGACTAAGCTGTTGGTGCAACTTCTTGTGGAAGGGATCAACAATAATTGGCGTGATTCTAATGGCACAATCAGTAAATTAACCGTGGAAACGAAGTTTATGCCGGAGATCAACAAAGAGTTTTGTCGTTCAAAAAACTACAATCACTACTTAAGCAGAATGAAGTATTTAAAAATACAATACCAAAGTTGTCTTGATCTTCAGCGTTTTAGTTCTGGTTTTGGTTGGGATCCTTTAACAAAAAGATTTACGGCTTCTGATGAAGTTTGGAGCGACTATCTAAAAGCACATCCGAACAATAAACAACTTCGTTATGATACATTTGAATTTTTTGACGAGTTGCAAATCATATTTGGGGAAGGTGTTGCTACTGGAAAAAATGCAATTGGATTATGTGATAGTACGGATGGACTTACGTACAGAGCTGGAGAGAATCCAAGAAAAGAATATGTGGATGATTTTGACAACGTGTATGAGTATGATACTACAACTCATCATGAGTCATCGGAGCACTACGCACCATTTATGTCTCATGGAACTTCAGAAAGTCCTAAGCTTCCCCCACGTAAAAGAACAAGATCTGAGAGAAGTACTTCACAAAAAGAAGAAAGTCCTATGATGGTTGTTAGCAGTAAAATTTTGGATATAATACAACAAAGAGAAGAGAGGCAACAAAATGAAGTGGCACAGAAAAAGAATAACGTTTGGGATGCTATAAAAGAAATTTCTGACTTGGATGAATGTATTCGTTACAAGGCACTTACGAAAATTTATCATTTGGGAATACAAGACGTTTTCGTGAGCATGTCGGTGGAAGAGAGGCTAGGATGGATTCAAACCATTATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

303

Amino Acids

35.44

Weight (kDa)

5.9

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 113 9.5e-19 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 255 - 300 4.1e-22 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 42
AclI AACGTT 1 cut(s) 762
AclWI GGATC 3 cut(s) 104, 284, 297
AcsI RAATTY 4 cut(s) 386, 696, 783, 828
AcuI CTGAAG 2 cut(s) 245, 585
AfaI GTAC 3 cut(s) 463, 479, 652
AflII CTTAAG 1 cut(s) 211
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 3 cut(s) 192, 386, 896
AluBI AGCT 3 cut(s) 70, 485, 616
AluI AGCT 3 cut(s) 70, 485, 616
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 3 cut(s) 56, 57, 594
AlwI GGATC 3 cut(s) 104, 284, 297
ApoI RAATTY 4 cut(s) 386, 696, 783, 828
Asp700I GAANNNNTTC 2 cut(s) 652, 804
BamHI GGATCC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 573
BccI CCATC 3 cut(s) 461, 673, 882
BceAI ACGGC 1 cut(s) 327
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcoDI GTCTC 3 cut(s) 56, 57, 594
BfaI CTAG 1 cut(s) 884
BfrI CTTAAG 1 cut(s) 211
BglII AGATCT 1 cut(s) 638
BmcAI AGTACT 1 cut(s) 652
BmiI GGNNCC 1 cut(s) 291
BmsI GCATC 1 cut(s) 760
BpmI CTGGAG 2 cut(s) 39, 507
Bpu10I CCTNAGC 1 cut(s) 612
BsaAI YACGTR 2 cut(s) 477, 626
BsaBI GATNNNNATC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 47, 144
Bse1I ACTGG 1 cut(s) 436
Bse8I GATNNNNATC 1 cut(s) 42
BseDI CCNNGG 2 cut(s) 47, 144
BseGI GGATG 6 cut(s) 349, 472, 520, 775, 802, 893
BseJI GATNNNNATC 1 cut(s) 42
BseMII CTCAG 1 cut(s) 633
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 573
BsiSI CCGG 1 cut(s) 164
BsmAI GTCTC 3 cut(s) 56, 57, 594
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 573
Bsp143I GATC 5 cut(s) 96, 168, 256, 289, 638
BspCNI CTCAG 1 cut(s) 634
BspHI TCATGA 1 cut(s) 556
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 3 cut(s) 104, 284, 297
BspTI CTTAAG 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 57
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 47, 144
BssMI GATC 5 cut(s) 96, 168, 256, 289, 638
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 717, 870
BstAFI CTTAAG 1 cut(s) 211
BstBAI YACGTR 2 cut(s) 477, 626
BstDEI CTNAG 3 cut(s) 66, 612, 642
BstDSI CCRYGG 2 cut(s) 47, 144
BstF5I GGATG 6 cut(s) 349, 472, 520, 775, 802, 893
BstKTI GATC 5 cut(s) 99, 171, 259, 292, 641
BstMAI GTCTC 3 cut(s) 56, 57, 594
BstMBI GATC 5 cut(s) 96, 168, 256, 289, 638
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 1 cut(s) 868
BstSNI TACGTA 1 cut(s) 477
BstX2I RGATCY 2 cut(s) 289, 638
BstYI RGATCY 2 cut(s) 289, 638
BtgI CCRYGG 2 cut(s) 47, 144
BtsCI GGATG 6 cut(s) 349, 472, 520, 775, 802, 893
CciI TCATGA 1 cut(s) 556
Csp6I GTAC 3 cut(s) 462, 478, 651
CviAII CATG 3 cut(s) 557, 593, 865
CviJI RGCY 5 cut(s) 70, 314, 485, 616, 883
CviKI_1 RGCY 5 cut(s) 70, 314, 485, 616, 883
CviQI GTAC 3 cut(s) 462, 478, 651
DdeI CTNAG 3 cut(s) 66, 612, 642
DpnI GATC 5 cut(s) 98, 170, 258, 291, 640
DpnII GATC 5 cut(s) 96, 168, 256, 289, 638
DraI TTTAAA 1 cut(s) 231
Eam1104I CTCTTC 2 cut(s) 717, 870
EarI CTCTTC 2 cut(s) 717, 870
Eco105I TACGTA 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 245, 585
FaeI CATG 3 cut(s) 560, 596, 868
FatI CATG 3 cut(s) 556, 592, 864
FokI GGATG 6 cut(s) 336, 479, 527, 782, 809, 900
FspBI CTAG 1 cut(s) 884
GsuI CTGGAG 2 cut(s) 39, 507
HapII CCGG 1 cut(s) 164
Hin1II CATG 3 cut(s) 560, 596, 868
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 5 cut(s) 8, 116, 493, 560, 892
HpaII CCGG 1 cut(s) 164
Hpy188I TCNGA 6 cut(s) 319, 354, 568, 604, 643, 790
Hpy188III TCNNGA 4 cut(s) 56, 254, 557, 859
HpyAV CCTTC 2 cut(s) 86, 413
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 5 cut(s) 476, 528, 625, 762, 852
HpyCH4V TGCA 3 cut(s) 79, 403, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
HpyF3I CTNAG 3 cut(s) 66, 612, 642
HpySE526I ACGT 5 cut(s) 476, 528, 625, 762, 852
Hsp92II CATG 3 cut(s) 560, 596, 868
Kzo9I GATC 5 cut(s) 96, 168, 256, 289, 638
LmnI GCTCC 2 cut(s) 330, 568
LpnPI CCDG 5 cut(s) 69, 177, 261, 417, 471
LweI GCATC 1 cut(s) 760
MaeI CTAG 1 cut(s) 884
MaeII ACGT 5 cut(s) 476, 528, 625, 762, 852
MaeIII GTNAC 1 cut(s) 809
MalI GATC 5 cut(s) 98, 170, 258, 291, 640
MboI GATC 5 cut(s) 96, 168, 256, 289, 638
MboII GAAGA 4 cut(s) 251, 677, 734, 887
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 2 cut(s) 289, 638
MhlI GDGCHC 1 cut(s) 573
MluCI AATT 7 cut(s) 106, 137, 386, 444, 696, 783, 828
MlyI GAGTC 1 cut(s) 569
MnlI CCTC 3 cut(s) 52, 720, 873
MroXI GAANNNNTTC 2 cut(s) 652, 804
MseI TTAA 4 cut(s) 140, 212, 230, 296
MslI CAYNNNNRTG 1 cut(s) 869
MspCI CTTAAG 1 cut(s) 211
MspI CCGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 76
NdeII GATC 5 cut(s) 96, 168, 256, 289, 638
NlaIII CATG 3 cut(s) 560, 596, 868
NlaIV GGNNCC 1 cut(s) 291
NspI RCATGY 1 cut(s) 868
PagI TCATGA 1 cut(s) 556
PdmI GAANNNNTTC 2 cut(s) 652, 804
PfeI GAWTC 4 cut(s) 8, 116, 493, 892
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
Ppu21I YACGTR 2 cut(s) 477, 626
PsiI TTATAA 1 cut(s) 42
Psp1406I AACGTT 1 cut(s) 762
PspN4I GGNNCC 1 cut(s) 291
PsuI RGATCY 2 cut(s) 289, 638
RsaI GTAC 3 cut(s) 463, 479, 652
RsaNI GTAC 3 cut(s) 462, 478, 651
RseI CAYNNNNRTG 1 cut(s) 869
SaqAI TTAA 4 cut(s) 140, 212, 230, 296
Sau3AI GATC 5 cut(s) 96, 168, 256, 289, 638
ScaI AGTACT 1 cut(s) 652
SchI GAGTC 1 cut(s) 569
SduI GDGCHC 1 cut(s) 573
SetI ASST 9 cut(s) 72, 424, 479, 487, 531, 618, 628, 765, 855
SfaNI GCATC 1 cut(s) 760
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
SnaBI TACGTA 1 cut(s) 477
Sse9I AATT 7 cut(s) 106, 137, 386, 444, 696, 783, 828
SspMI CTAG 1 cut(s) 884
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 5 cut(s) 479, 531, 628, 765, 855
TasI AATT 7 cut(s) 106, 137, 386, 444, 696, 783, 828
TatI WGTACW 1 cut(s) 650
TfiI GAWTC 4 cut(s) 8, 116, 493, 892
Tru1I TTAA 4 cut(s) 140, 212, 230, 296
Tru9I TTAA 4 cut(s) 140, 212, 230, 296
TspDTI ATGAA 4 cut(s) 236, 336, 753, 813
TspGWI ACGGA 2 cut(s) 36, 479
Vha464I CTTAAG 1 cut(s) 211
XapI RAATTY 4 cut(s) 386, 696, 783, 828
XceI RCATGY 1 cut(s) 868
XmnI GAANNNNTTC 2 cut(s) 652, 804
XspI CTAG 1 cut(s) 884
ZrmI AGTACT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.