AT2G29880
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006437
Physical Location & Seq
Forward (+)
12742536 .. 12743749
1214 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29880.1

Sequence Viewer

Length: 927 bp
ATGGAATCAGGAGACCAGGCAGGAGAGACGTCAAAAAAGAAAAAGAAAGGCCCATATATGTCATGGTCAGATCAAGAATGTTATGAGTTAACGGCTATATTAGTTGATGCTATCAAACGAGGCTGGCGTGACAAAAATGGTACCATAAGCAAAACTACGGTAGAGAGAAAAATACTACCTCTTCTAAATAAAAAGTTTAAATGTAATAAGACTTACACAAATTATTTAAGTCGAATGAAGTCTATGAAAAAGGAGTATTCTGTGTATGCTGCACTTTTTTGGTTTAGTTCTGGTTTTGGATGGGATCCCATCACAAAACAATTTACAGCTCCAGATGATGTGTGGGCAGCCTATTTGATGGGGCATCCAAATCATCATCACATGCGAACCAGCACTTTCGAAGATTTTGAGGATTTGCAACTGATTTTCGAAAGTGCTATAGCAAAGGGAAACAACGCGTTTGGACTTGGTGGTGATTCAAATGCTGAAACTTTTGAAGAAGAAGATGATCTTCAAGCAGGGGATAATGTGAACCATATGGAGATTAATGACGACGAGGTAAATGAAACACTTCCTAAAGAAAAGCTGCCTACTAGGAAAAGATCTAAAACTAATCGTAACGGAGATCGGTCAGATTCAATAAATCATGGTGAGTCTTCAGAGAAGGTGCTATCTGAAATGATTGGAGTTGGCACTAACATCATAAATCTTATTCAACAAAGAGAAGAAAGACATCAAAGAGAAGTTGAGTTTAGGGAAACTGAGAAAAAAAAGAACAATGTTTGGGATGCTATCAAGGAGATCCCGGATCTGGAAGATCACATCCGCTATGATGCAGTGACCAAGATCCACACATTGAATTTGAAAGACGTATTTGTGAGCATGTCTGTTGAAGAACGCTTGGGTTGGATTCGTCGTAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

308

Amino Acids

35.62

Weight (kDa)

5.92

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 21 - 118 6.3e-20 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 261 - 307 1e-24 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
Acc65I GGTACC 1 cut(s) 140
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 1 cut(s) 458
AciI CCGC 1 cut(s) 826
AclWI GGATC 5 cut(s) 299, 312, 796, 816, 841
AcsI RAATTY 1 cut(s) 859
AcuI CTGAAG 1 cut(s) 642
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 1 cut(s) 142
AfiI CCNNNNNNNGG 1 cut(s) 811
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 8 cut(s) 480, 497, 515, 639, 716, 859, 865, 893
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 2 cut(s) 329, 586
AluI AGCT 2 cut(s) 329, 586
Alw26I GTCTC 2 cut(s) 6, 20
AlwI GGATC 5 cut(s) 299, 312, 796, 816, 841
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 269, 347, 586
ApoI RAATTY 1 cut(s) 859
AseI ATTAAT 1 cut(s) 546
Asp700I GAANNNNTTC 1 cut(s) 570
Asp718I GGTACC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 50
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 2 cut(s) 485, 662
AsuII TTCGAA 2 cut(s) 399, 429
BamHI GGATCC 1 cut(s) 304
BanI GGYRCC 1 cut(s) 140
BbsI GAAGAC 1 cut(s) 648
BbvI GCAGC 3 cut(s) 256, 359, 573
BccI CCATC 3 cut(s) 294, 317, 352
BceAI ACGGC 1 cut(s) 108
BciT130I CCWGG 1 cut(s) 17
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 2 cut(s) 6, 20
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 438
BglII AGATCT 1 cut(s) 602
BisI GCNGC 3 cut(s) 270, 348, 587
BlsI GCNGC 3 cut(s) 271, 349, 588
Bme1390I CCNGG 2 cut(s) 17, 806
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 2 cut(s) 142, 306
BmrFI CCNGG 2 cut(s) 17, 806
BmsI GCATC 4 cut(s) 97, 373, 778, 823
BpiI GAAGAC 1 cut(s) 648
BpmI CTGGAG 1 cut(s) 315
Bpu14I TTCGAA 2 cut(s) 399, 429
BpuMI CCSGG 1 cut(s) 806
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 811
BseBI CCWGG 1 cut(s) 17
BseGI GGATG 4 cut(s) 305, 364, 793, 822
BseLI CCNNNNNNNGG 1 cut(s) 811
BseMII CTCAG 1 cut(s) 753
BseXI GCAGC 3 cut(s) 256, 359, 573
BsgI GTGCAG 1 cut(s) 255
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 140
BsiSI CCGG 1 cut(s) 806
BslI CCNNNNNNNGG 1 cut(s) 811
BsmAI GTCTC 2 cut(s) 6, 20
BsmBI CGTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 51
Bso31I GGTCTC 1 cut(s) 6
Bsp119I TTCGAA 2 cut(s) 399, 429
Bsp143I GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
BspACI CCGC 1 cut(s) 826
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 754
BspFNI CGCG 1 cut(s) 458
BspLI GGNNCC 2 cut(s) 142, 306
BspPI GGATC 5 cut(s) 299, 312, 796, 816, 841
BspT104I TTCGAA 2 cut(s) 399, 429
BspT107I GGYRCC 1 cut(s) 140
BspTNI GGTCTC 1 cut(s) 6
BssMI GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
BssNI GRCGYC 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 1 cut(s) 186
BstACI GRCGYC 1 cut(s) 29
BstBI TTCGAA 2 cut(s) 399, 429
BstC8I GCNNGC 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 762
BstF5I GGATG 4 cut(s) 305, 364, 793, 822
BstFNI CGCG 1 cut(s) 458
BstKTI GATC 9 cut(s) 73, 307, 511, 605, 628, 804, 811, 820, 849
BstMAI GTCTC 2 cut(s) 6, 20
BstMBI GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
BstNI CCWGG 1 cut(s) 17
BstNSI RCATGY 2 cut(s) 385, 886
BstSCI CCNGG 2 cut(s) 15, 804
BstSFI CTRYAG 1 cut(s) 438
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 3 cut(s) 256, 359, 573
BstV2I GAAGAC 1 cut(s) 648
BstX2I RGATCY 5 cut(s) 304, 602, 801, 808, 846
BstYI RGATCY 5 cut(s) 304, 602, 801, 808, 846
BsuRI GGCC 1 cut(s) 51
BtsCI GGATG 4 cut(s) 305, 364, 793, 822
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 1 cut(s) 843
Cac8I GCNNGC 1 cut(s) 125
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 141
CviAII CATG 4 cut(s) 63, 382, 647, 883
CviJI RGCY 6 cut(s) 51, 95, 123, 329, 350, 586
CviKI_1 RGCY 6 cut(s) 51, 95, 123, 329, 350, 586
CviQI GTAC 1 cut(s) 141
DdeI CTNAG 1 cut(s) 762
DpnI GATC 9 cut(s) 72, 306, 510, 604, 627, 803, 810, 819, 848
DpnII GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
DraI TTTAAA 1 cut(s) 199
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 642
EcoRII CCWGG 1 cut(s) 15
Esp3I CGTCTC 1 cut(s) 20
FaeI CATG 4 cut(s) 66, 385, 650, 886
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FatI CATG 4 cut(s) 62, 381, 646, 882
FauNDI CATATG 1 cut(s) 537
Fnu4HI GCNGC 3 cut(s) 270, 348, 587
FokI GGATG 4 cut(s) 312, 351, 800, 809
Fsp4HI GCNGC 3 cut(s) 270, 348, 587
FspBI CTAG 1 cut(s) 594
GluI GCNGC 3 cut(s) 270, 348, 587
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 806
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 4 cut(s) 66, 385, 650, 886
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 5 cut(s) 5, 476, 635, 653, 910
HpaI GTTAAC 1 cut(s) 90
HpaII CCGG 1 cut(s) 806
HphI GGTGA 2 cut(s) 485, 662
Hpy166II GTNNAC 2 cut(s) 90, 532
Hpy188I TCNGA 4 cut(s) 70, 634, 661, 676
Hpy188III TCNNGA 4 cut(s) 9, 74, 332, 812
Hpy8I GTNNAC 2 cut(s) 90, 532
Hpy99I CGWCG 2 cut(s) 557, 918
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4IV ACGT 2 cut(s) 29, 870
HpyCH4V TGCA 3 cut(s) 272, 418, 836
HpyF3I CTNAG 1 cut(s) 762
HpySE526I ACGT 2 cut(s) 29, 870
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 4 cut(s) 66, 385, 650, 886
KpnI GGTACC 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 90
Kzo9I GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 3 cut(s) 256, 359, 573
LweI GCATC 4 cut(s) 97, 373, 778, 823
MaeI CTAG 1 cut(s) 594
MaeII ACGT 2 cut(s) 29, 870
MaeIII GTNAC 4 cut(s) 128, 617, 838, 917
MalI GATC 9 cut(s) 72, 306, 510, 604, 627, 803, 810, 819, 848
MboI GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
MflI RGATCY 5 cut(s) 304, 602, 801, 808, 846
MluCI AATT 3 cut(s) 220, 320, 859
MluI ACGCGT 1 cut(s) 456
MlyI GAGTC 1 cut(s) 662
MmeI TCCRAC 1 cut(s) 887
MnlI CCTC 4 cut(s) 113, 189, 403, 550
MroXI GAANNNNTTC 1 cut(s) 570
MseI TTAA 5 cut(s) 89, 198, 227, 546, 925
MspI CCGG 1 cut(s) 806
MspR9I CCNGG 2 cut(s) 17, 806
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 458
NciI CCSGG 1 cut(s) 806
NdeI CATATG 1 cut(s) 537
NdeII GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
NlaIII CATG 4 cut(s) 66, 385, 650, 886
NlaIV GGNNCC 2 cut(s) 142, 306
NmuCI GTSAC 2 cut(s) 128, 838
NspI RCATGY 2 cut(s) 385, 886
NspV TTCGAA 2 cut(s) 399, 429
PcsI WCGNNNNNNNCGW 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 4 cut(s) 5, 476, 635, 910
PfoI TCCNGGA 1 cut(s) 804
PkrI GCNGC 3 cut(s) 271, 349, 588
PleI GAGTC 1 cut(s) 661
PpsI GAGTC 1 cut(s) 661
PshBI ATTAAT 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 2 cut(s) 142, 306
PspPI GGNCC 1 cut(s) 50
PsuI RGATCY 5 cut(s) 304, 602, 801, 808, 846
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SaqAI TTAA 5 cut(s) 89, 198, 227, 546, 925
SatI GCNGC 3 cut(s) 270, 348, 587
Sau3AI GATC 9 cut(s) 70, 304, 508, 602, 625, 801, 808, 817, 846
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 662
ScrFI CCNGG 2 cut(s) 17, 806
SetI ASST 7 cut(s) 32, 181, 331, 561, 588, 669, 873
SfaNI GCATC 4 cut(s) 97, 373, 778, 823
SfcI CTRYAG 1 cut(s) 438
SfuI TTCGAA 2 cut(s) 399, 429
Sse9I AATT 3 cut(s) 220, 320, 859
SsiI CCGC 1 cut(s) 826
SspMI CTAG 1 cut(s) 594
StyD4I CCNGG 2 cut(s) 15, 804
TaaI ACNGT 1 cut(s) 160
TaiI ACGT 2 cut(s) 32, 873
TaqI TCGA 3 cut(s) 232, 399, 429
TaqII GACCGA 1 cut(s) 618
TasI AATT 3 cut(s) 220, 320, 859
TfiI GAWTC 4 cut(s) 5, 476, 635, 910
Tru1I TTAA 5 cut(s) 89, 198, 227, 546, 925
Tru9I TTAA 5 cut(s) 89, 198, 227, 546, 925
TscAI CASTG 1 cut(s) 843
TseFI GTSAC 2 cut(s) 128, 838
TseI GCWGC 3 cut(s) 269, 347, 586
Tsp45I GTSAC 2 cut(s) 128, 838
TspDTI ATGAA 3 cut(s) 251, 260, 579
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 1 cut(s) 843
VspI ATTAAT 1 cut(s) 546
XapI RAATTY 1 cut(s) 859
XceI RCATGY 2 cut(s) 385, 886
XcmI CCANNNNNNNNNTGG 2 cut(s) 60, 339
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 1 cut(s) 594
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.