Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006437

Physical Location & Seq

Genomic Coordinates Forward (+)

11085108 .. 11086105

Gene Structure 998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G073100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGAGATTGCGAACAAGTAACTGGAAAAGGGAAAGCCAAGAAAGATTATAGTGCTTGGAGTGTGGAAGAGAGCAAAATGTTGTTGCAGCTCATGGTTGATGTTGCATCTCGTGGATGGCGTGATGCCAATGGCGTGCTAAGCAAGGCAACAGTAGAAACCAAAATACTTCCCATCCTTAATGAAAAACTTGGGTGTCAGAAAACCTATTGTCATTACCAAAGTCGGTTGAAATACTTTAAGAGAGAATATCAAAAATATTCACAGCTTATGCGTCATAACTCTGGGTTTGGGTGGGACTCAACCACAAAGAAATTCACTGCTCCTGAAGAAATTTGGGAAGACTACTTTAAGTCCCACCCAACCCACAGGCATATTCAAACAAAAACTTGTGAGGACTATGAGGATTTGCAAATTGTCATTGGGAATGCAGCTGTTAGTGGAAAAAACTCATTAGGATTGGGTGATGGTACTGATGCAAGAACTTTTGGGGTGGAAGATAGACAAGTTGGAATAGAGGACTTTGTTTATGATAATGACACTCGTGCCTTTGTACCAAATCATAATGAAGCATCACACCAAGATCCACCACTCGGACATTCTTCTTCATCCTTACCTTTTCAGGCCAATATTTGGACAAGTCCCTCAGAAAGCTCAAGCCAGAGAAAACGAACTAGACCAGAGCATGAAGGGAATGGTAGCCAATATGAGACATGTATGGACAGAATTAGTTTTAGCATTGCTGAAATTGCTACCGACTTCAAGGGAGTCCACAGCCTATTGGGAAAAAGGGAAAAAGACAGGGAGAGGCAAAGTTATATATGGGATGTCATTAAGGAGACTCCAAATATGGATGAACGTGCTCGTTATAAAGCCCTTTCTTTGTTGAATATTACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

301

Amino Acids

34.26

Weight (kDa)

6.57

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30140 AT1G30140 AT2G29880 AT5G27260
malus_domestica	MD03G1206200.v1.1 MD03G1212300.v1.1 MD05G1104000.v1.1 MD05G1188000.v1.1 MD06G1083900.v1.1 MD08G1125600.v1.1 MD12G1017200.v1.1 MD16G1269500.v1.1
prunus_persica	Prupe.1G130600_v2.0.a1 Prupe.1G170700_v2.0.a1 Prupe.1G229800_v2.0.a1 Prupe.2G168600_v2.0.a1 Prupe.3G122800_v2.0.a1 Prupe.4G156100_v2.0.a1 Prupe.4G168300_v2.0.a1 Prupe.6G020000_v2.0.a1 Prupe.6G133700_v2.0.a1 Prupe.6G164800_v2.0.a1 Prupe.7G073100_v2.0.a1 Prupe.7G105100_v2.0.a1
pyrus_communis	pycom02g17640 pycom08g12750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	870
AccB7I	CCANNNNNTGG	1 cut(s)	633
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	2 cut(s)	314, 333
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	472, 555
AfiI	CCNNNNNNNGG	2 cut(s)	593, 633
AflIII	ACRYGT	1 cut(s)	713
AgsI	TTSAA	4 cut(s)	232, 380, 763, 889
AluBI	AGCT	4 cut(s)	91, 268, 434, 654
AluI	AGCT	4 cut(s)	91, 268, 434, 654
Alw21I	GWGCWC	1 cut(s)	865
Alw26I	GTCTC	2 cut(s)	704, 833
AlwI	GGATC	1 cut(s)	578
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	2 cut(s)	88, 431
ApoI	RAATTY	2 cut(s)	314, 333
AsuHPI	GGTGA	1 cut(s)	476
BauI	CACGAG	2 cut(s)	111, 543
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	865
BbvI	GCAGC	2 cut(s)	100, 443
BccI	CCATC	3 cut(s)	111, 182, 461
BcoDI	GTCTC	2 cut(s)	704, 833
BfaI	CTAG	1 cut(s)	675
BisI	GCNGC	2 cut(s)	89, 432
BlpI	GCTNAGC	1 cut(s)	140
BlsI	GCNGC	2 cut(s)	90, 433
BmsI	GCATC	4 cut(s)	115, 116, 466, 581
BpiI	GAAGAC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	2 cut(s)	593, 633
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	738
BseGI	GGATG	5 cut(s)	122, 174, 608, 832, 859
BseLI	CCNNNNNNNGG	2 cut(s)	593, 633
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	1 cut(s)	660
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	100, 443
BshFI	GGCC	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	865
BslFI	GGGAC	3 cut(s)	311, 340, 627
BslI	CCNNNNNNNGG	2 cut(s)	593, 633
BsmAI	GTCTC	2 cut(s)	704, 833
BsmFI	GGGAC	3 cut(s)	311, 340, 627
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	626
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	1 cut(s)	583
Bsp1720I	GCTNAGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	626
BspCNI	CTCAG	1 cut(s)	659
BspPI	GGATC	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	583
BssSI	CACGAG	2 cut(s)	111, 543
Bst2BI	CACGAG	2 cut(s)	111, 543
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	2 cut(s)	140, 646
BstF5I	GGATG	5 cut(s)	122, 174, 608, 832, 859
BstKTI	GATC	1 cut(s)	586
BstMAI	GTCTC	2 cut(s)	704, 833
BstMBI	GATC	1 cut(s)	583
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 749
BstNSI	RCATGY	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	100, 443
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	626
BtsCI	GGATG	5 cut(s)	122, 174, 608, 832, 859
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	137
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	471, 554
CviAII	CATG	3 cut(s)	94, 686, 714
CviQI	GTAC	2 cut(s)	471, 554
DdeI	CTNAG	2 cut(s)	140, 646
DpnI	GATC	1 cut(s)	585
DpnII	GATC	1 cut(s)	583
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	348
FaeI	CATG	3 cut(s)	97, 689, 717
FaqI	GGGAC	3 cut(s)	311, 340, 627
FatI	CATG	3 cut(s)	93, 685, 713
Fnu4HI	GCNGC	2 cut(s)	89, 432
FokI	GGATG	5 cut(s)	129, 161, 595, 839, 866
Fsp4HI	GCNGC	2 cut(s)	89, 432
FspBI	CTAG	1 cut(s)	675
GluI	GCNGC	2 cut(s)	89, 432
HaeIII	GGCC	1 cut(s)	626
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	3 cut(s)	97, 689, 717
HinfI	GANTC	3 cut(s)	299, 768, 841
HphI	GGTGA	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	3 cut(s)	201, 596, 649
Hpy188III	TCNNGA	1 cut(s)	326
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	1 cut(s)	683
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	5 cut(s)	88, 107, 412, 431, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 749
HpyF3I	CTNAG	2 cut(s)	140, 646
HpySE526I	ACGT	1 cut(s)	859
Hsp92II	CATG	3 cut(s)	97, 689, 717
Kzo9I	GATC	1 cut(s)	583
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	9, 270, 339, 355, 608, 674, 693, 787
Lsp1109I	GCAGC	2 cut(s)	100, 443
LweI	GCATC	4 cut(s)	115, 116, 466, 581
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	585
MboI	GATC	1 cut(s)	583
MboII	GAAGA	6 cut(s)	80, 341, 353, 509, 594, 597
MflI	RGATCY	1 cut(s)	583
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	5 cut(s)	314, 333, 414, 726, 747
MlyI	GAGTC	3 cut(s)	293, 777, 835
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	5 cut(s)	388, 397, 511, 655, 801
MseI	TTAA	4 cut(s)	180, 240, 351, 834
MspA1I	CMGCKG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	141, 749
NdeII	GATC	1 cut(s)	583
NlaIII	CATG	3 cut(s)	97, 689, 717
NspI	RCATGY	1 cut(s)	717
PciI	ACATGT	1 cut(s)	713
PcsI	WCGNNNNNNNCGW	1 cut(s)	118
PctI	GAATGC	1 cut(s)	433
PflMI	CCANNNNNTGG	1 cut(s)	633
PkrI	GCNGC	2 cut(s)	90, 433
PleI	GAGTC	3 cut(s)	293, 776, 835
PpsI	GAGTC	3 cut(s)	293, 776, 835
PscI	ACATGT	1 cut(s)	713
PsiI	TTATAA	1 cut(s)	870
PsuI	RGATCY	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	2 cut(s)	472, 555
RsaNI	GTAC	2 cut(s)	471, 554
SaqAI	TTAA	4 cut(s)	180, 240, 351, 834
SatI	GCNGC	2 cut(s)	89, 432
Sau3AI	GATC	1 cut(s)	583
SchI	GAGTC	3 cut(s)	293, 777, 835
SduI	GDGCHC	1 cut(s)	865
SetI	ASST	7 cut(s)	93, 209, 270, 436, 619, 656, 862
SfaNI	GCATC	4 cut(s)	115, 116, 466, 581
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
Sse9I	AATT	5 cut(s)	314, 333, 414, 726, 747
SspI	AATATT	3 cut(s)	260, 631, 892
SspMI	CTAG	1 cut(s)	675
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	862
TasI	AATT	5 cut(s)	314, 333, 414, 726, 747
Tru1I	TTAA	4 cut(s)	180, 240, 351, 834
Tru9I	TTAA	4 cut(s)	180, 240, 351, 834
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	2 cut(s)	88, 431
TspDTI	ATGAA	5 cut(s)	198, 582, 597, 702, 870
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	1 cut(s)	633
XapI	RAATTY	2 cut(s)	314, 333
XceI	RCATGY	1 cut(s)	717
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.