MD06G1083900.v1.1
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0006437
Physical Location & Seq
Forward (+)
20548517 .. 20549292
776 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1083900.v1.1.491

Sequence Viewer

Length: 663 bp
ATGAAGTATGGGAAGGCTTCCTTAGGTCTAGGTATTCGCAAAGAGACATTTACGGACTATGAAGATTTGATGACTGTATTTGGCGATGGAACAGCTAAAGGAAATAACTCAATTGGATTGGGTGATGATACTGATGCCACAACATATACAGTCGAAGAAAGTAGGCCAATCAGAGTAAACGAATTTCCTTCACCTGATGAGAGCTTTGAGCAACTTGATCCATTATTTCAAAATCCATCATATGCATCATCTTTCCTAGATGCAAATTTGGAGGGTTCCGCTCCAACACCCGTACAAAAGCTACTTCCAAGGAAAAGATCTCGACCTGAGTCTGAGCTAAAATCAAATGGGACCACCCCTCACATCGTTCTTATAGAAAAAGGTTCCCTCGGAATGGATTCGATTGCTGCAATTGCTACTGAAATTCAAGGAATTCATAGCATAATGGAGAAAAGAGAAAAAGCTAGAGAAAAAATGGAAAAGGAGAAAAAAGAAGAAGAGAAAAACAACAATCTTTGGGATGCTATCAAAGAGACTCCAAACTTGGATCCTCTCGTTCGTTACAAAGCAATTGCATTGGTTCAACAGTTGGGAATGAAAAAAGAGTTCTTGAAAATGACACCAGAAGAACGCTCAGAGTGGATAAAATACAATATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

221

Amino Acids

24.83

Weight (kDa)

5.23

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g29880_C PF24769 172 - 218 1.3e-24 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 281
AciI CCGC 1 cut(s) 279
AclWI GGATC 3 cut(s) 212, 542, 555
AcsI RAATTY 4 cut(s) 182, 265, 423, 432
AfaI GTAC 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 394
AgsI TTSAA 4 cut(s) 230, 428, 584, 613
AluBI AGCT 5 cut(s) 95, 204, 301, 337, 464
AluI AGCT 5 cut(s) 95, 204, 301, 337, 464
Alw26I GTCTC 2 cut(s) 38, 527
AlwI GGATC 3 cut(s) 212, 542, 555
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 4 cut(s) 182, 265, 423, 432
Asp700I GAANNNNTTC 1 cut(s) 397
AspS9I GGNCC 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 134, 183
AvaII GGWCC 1 cut(s) 351
AxyI CCTNAGG 1 cut(s) 22
BamHI GGATCC 1 cut(s) 547
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 80, 244
BcoDI GTCTC 2 cut(s) 38, 527
BfaI CTAG 3 cut(s) 29, 257, 465
BglII AGATCT 1 cut(s) 317
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme18I GGWCC 1 cut(s) 351
BmgT120I GGNCC 1 cut(s) 351
BmiI GGNNCC 4 cut(s) 277, 352, 385, 549
BmsI GCATC 4 cut(s) 124, 250, 254, 511
BoxI GACNNNNGTC 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 308, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse21I CCTNAGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 308, 388
BseGI GGATG 1 cut(s) 526
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 3 cut(s) 318, 324, 648
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 1 cut(s) 166
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 38, 527
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 217, 317, 547
BspACI CCGC 1 cut(s) 279
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 3 cut(s) 319, 325, 647
BspLI GGNNCC 4 cut(s) 277, 352, 385, 549
BspPI GGATC 3 cut(s) 212, 542, 555
BsrBI CCGCTC 1 cut(s) 281
BssECI CCNNGG 2 cut(s) 308, 388
BssMI GATC 3 cut(s) 217, 317, 547
BssT1I CCWWGG 1 cut(s) 308
Bst4CI ACNGT 3 cut(s) 76, 151, 588
Bst6I CTCTTC 1 cut(s) 492
BstDEI CTNAG 4 cut(s) 22, 327, 333, 634
BstF5I GGATG 1 cut(s) 526
BstKTI GATC 3 cut(s) 220, 320, 550
BstMAI GTCTC 2 cut(s) 38, 527
BstMBI GATC 3 cut(s) 217, 317, 547
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstPAI GACNNNNGTC 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 394
BstX2I RGATCY 2 cut(s) 317, 547
BstYI RGATCY 2 cut(s) 317, 547
Bsu36I CCTNAGG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 166
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 526
Cfr13I GGNCC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 293
CviJI RGCY 7 cut(s) 17, 95, 166, 204, 301, 337, 464
CviKI_1 RGCY 7 cut(s) 17, 95, 166, 204, 301, 337, 464
CviQI GTAC 1 cut(s) 293
DdeI CTNAG 4 cut(s) 22, 327, 333, 634
DpnI GATC 3 cut(s) 219, 319, 549
DpnII GATC 3 cut(s) 217, 317, 547
Eam1104I CTCTTC 1 cut(s) 492
EarI CTCTTC 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 351
Eco81I CCTNAGG 1 cut(s) 22
EcoRI GAATTC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 308
EcoT22I ATGCAT 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 308
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 364
FauNDI CATATG 1 cut(s) 241
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 1 cut(s) 533
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 3 cut(s) 29, 257, 465
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 166
HinfI GANTC 3 cut(s) 329, 398, 535
HphI GGTGA 2 cut(s) 134, 183
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 4 cut(s) 173, 334, 392, 637
Hpy188III TCNNGA 2 cut(s) 321, 610
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 7, 198
HpyCH4III ACNGT 3 cut(s) 76, 151, 588
HpyCH4V TGCA 4 cut(s) 245, 263, 410, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 4 cut(s) 22, 327, 333, 634
Kzo9I GATC 3 cut(s) 217, 317, 547
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 3 cut(s) 207, 339, 636
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 4 cut(s) 124, 250, 254, 511
MaeI CTAG 3 cut(s) 29, 257, 465
MaeIII GTNAC 1 cut(s) 560
MalI GATC 3 cut(s) 219, 319, 549
MbiI CCGCTC 1 cut(s) 281
MboI GATC 3 cut(s) 217, 317, 547
MboII GAAGA 5 cut(s) 74, 167, 506, 509, 638
MfeI CAATTG 3 cut(s) 111, 411, 570
MflI RGATCY 2 cut(s) 317, 547
MluCI AATT 8 cut(s) 111, 182, 265, 411, 423, 432, 570, 658
MlyI GAGTC 2 cut(s) 338, 529
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 4 cut(s) 265, 369, 398, 561
Mph1103I ATGCAT 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 397
MunI CAATTG 3 cut(s) 111, 411, 570
MwoI GCNNNNNNNGC 1 cut(s) 413
NdeI CATATG 1 cut(s) 241
NdeII GATC 3 cut(s) 217, 317, 547
NlaIV GGNNCC 4 cut(s) 277, 352, 385, 549
NsiI ATGCAT 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 397
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 2 cut(s) 337, 529
PpsI GAGTC 2 cut(s) 337, 529
PshAI GACNNNNGTC 1 cut(s) 328
PspN4I GGNNCC 4 cut(s) 277, 352, 385, 549
PspPI GGNCC 1 cut(s) 351
PsuI RGATCY 2 cut(s) 317, 547
RsaI GTAC 1 cut(s) 294
RsaNI GTAC 1 cut(s) 293
SatI GCNGC 1 cut(s) 408
Sau3AI GATC 3 cut(s) 217, 317, 547
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 2 cut(s) 338, 529
SfaNI GCATC 4 cut(s) 124, 250, 254, 511
SinI GGWCC 1 cut(s) 351
Sse9I AATT 8 cut(s) 111, 182, 265, 411, 423, 432, 570, 658
SsiI CCGC 1 cut(s) 279
SspMI CTAG 3 cut(s) 29, 257, 465
StyI CCWWGG 1 cut(s) 308
TaaI ACNGT 3 cut(s) 76, 151, 588
TaqI TCGA 3 cut(s) 153, 322, 401
TasI AATT 8 cut(s) 111, 182, 265, 411, 423, 432, 570, 658
TfiI GAWTC 1 cut(s) 398
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 4 cut(s) 17, 75, 425, 611
TspGWI ACGGA 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 351
XapI RAATTY 4 cut(s) 182, 265, 423, 432
XmnI GAANNNNTTC 1 cut(s) 397
XspI CTAG 3 cut(s) 29, 257, 465
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.