Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006437

Physical Location & Seq

Genomic Coordinates Reverse (-)

14075168 .. 14076242

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G170700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGAAGAATCACAACGAGGAAATGACAAAGGAAAGAGCAAAGTTAGTGGGGGTTATAAATTGTGGACATTGGAAGAGAGCAATGAGTTGCTACAGCTCATGGTTGATGCCGCCAATCGTGGATGGCGTGATAGTAATGGAATGCTAAGTAAGCAAACAGTTGAGAAAAAGATACTTCCTGCTCTTAATGCAAAACTTGGATGTGAAAGGAATCATTCACAATACTTAAGCCGATTGAAATGGTTTAAGCAACGATATAATATTTTTTCTGAGCTTATGCGTCATAGCTCTGGGTTTGGGTGGGATCCAATCACAAAGAAGTTCACTGCTAGTGATGAAGTGTGGAAAGATTATATTAAGTTCCACCCGGCCCATGTCAACTTTCAGATAGACACTTTTGCTGACTATGAACTTCTGAGAATTGCAATTGGGAATGGAACTGCCGTTGGAAGAAACTCAATTGCATTGGGAGATGATACGGATGCAAGAACATTAGGAGTGGAAGAAAGTAGACGTGTGGGGATAGATGACTTGAGTTATGACTATGATAATCATGCATTCATACCAAATGAAGTTGAAGCTGCAACATTCCAAGATCTATCACCCAAACAACCTAATTCATATGTTCCCACTCAAGGCACGAATGTGGAGCTTCCCTTGGAAAGCAATGGTCAGACAAAAAGAAATAGAACTGAGTATGAGGGGAACACTAGCTCTTTTGAGACCAACACTCGAGCCGATGTTCTAGAAAGAGTTTCTCTTAGCATTGATTCAATTGCCACAGATTTTCGGGGAATCCATAGCCTTATGGAAAAAAAGGAAAAAGAGAGTGGTTGCTGGGATGCTATCATGGAAATCCCAAACTTAGATAGTCAGGTTCGTTACAAGGTTGTTGAGTTGCTTAATACTAAAGCAAAAAAAGATATGTTCTGGAAAATGTCACCTCAGGAGCGCAAAGATTGGATAATGTATAAGTTGTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

329

Amino Acids

37.63

Weight (kDa)

5.83

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30140 AT1G30140 AT2G29880 AT5G27260
malus_domestica	MD03G1206200.v1.1 MD03G1212300.v1.1 MD05G1104000.v1.1 MD05G1188000.v1.1 MD06G1083900.v1.1 MD08G1125600.v1.1 MD12G1017200.v1.1 MD16G1269500.v1.1
prunus_persica	Prupe.1G130600_v2.0.a1 Prupe.1G170700_v2.0.a1 Prupe.1G229800_v2.0.a1 Prupe.2G168600_v2.0.a1 Prupe.3G122800_v2.0.a1 Prupe.4G156100_v2.0.a1 Prupe.4G168300_v2.0.a1 Prupe.6G020000_v2.0.a1 Prupe.6G133700_v2.0.a1 Prupe.6G164800_v2.0.a1 Prupe.7G073100_v2.0.a1 Prupe.7G105100_v2.0.a1
pyrus_communis	pycom02g17640 pycom08g12750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	57
AccI	GTMKAC	1 cut(s)	511
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	2 cut(s)	299, 312
AfiI	CCNNNNNNNGG	1 cut(s)	635
AflII	CTTAAG	1 cut(s)	226
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	3 cut(s)	238, 578, 774
AjiI	CACGTC	1 cut(s)	515
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	6 cut(s)	97, 274, 288, 581, 652, 714
AluI	AGCT	6 cut(s)	97, 274, 288, 581, 652, 714
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	2 cut(s)	299, 312
Ama87I	CYCGRG	1 cut(s)	732
AoxI	GGCC	1 cut(s)	369
ApeKI	GCWGC	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	954
AspS9I	GGNCC	1 cut(s)	370
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	594, 933
AvaI	CYCGRG	1 cut(s)	732
AxyI	CCTNAGG	1 cut(s)	945
BamHI	GGATCC	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	1 cut(s)	117
BceAI	ACGGC	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	3 cut(s)	330, 711, 746
BfmI	CTRYAG	1 cut(s)	92
BfrI	CTTAAG	1 cut(s)	226
BglII	AGATCT	1 cut(s)	595
BisI	GCNGC	2 cut(s)	111, 582
BlsI	GCNGC	2 cut(s)	112, 583
Bme1390I	CCNGG	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	732
BmgBI	CACGTC	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	370
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	368
BmsI	GCATC	3 cut(s)	97, 472, 832
BpuEI	CTTGAG	2 cut(s)	553, 618
BpuMI	CCSGG	1 cut(s)	368
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	657
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse21I	CCTNAGG	1 cut(s)	945
Bse3DI	GCAATG	2 cut(s)	88, 673
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	4 cut(s)	128, 206, 487, 847
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	2 cut(s)	88, 673
BseMII	CTCAG	4 cut(s)	261, 407, 684, 959
BseXI	GCAGC	1 cut(s)	568
BseYI	CCCAGC	1 cut(s)	837
BshFI	GGCC	1 cut(s)	371
BsiHKCI	CYCGRG	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	368
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	1 cut(s)	716
BsmI	GAATGC	2 cut(s)	147, 557
BsnI	GGCC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	716
BsoBI	CYCGRG	1 cut(s)	732
Bsp143I	GATC	2 cut(s)	304, 595
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	371
BspCNI	CTCAG	4 cut(s)	262, 408, 685, 958
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	299, 312
BspTI	CTTAAG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	716
BsrDI	GCAATG	2 cut(s)	88, 673
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	2 cut(s)	304, 595
BssT1I	CCWWGG	1 cut(s)	657
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	69
BstAFI	CTTAAG	1 cut(s)	226
BstDEI	CTNAG	7 cut(s)	146, 270, 416, 693, 761, 865, 945
BstF5I	GGATG	4 cut(s)	128, 206, 487, 847
BstHHI	GCGC	1 cut(s)	954
BstKTI	GATC	2 cut(s)	307, 598
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	2 cut(s)	304, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 188
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	568
BstX2I	RGATCY	2 cut(s)	304, 595
BstYI	RGATCY	2 cut(s)	304, 595
Bsu36I	CCTNAGG	1 cut(s)	945
BsuRI	GGCC	1 cut(s)	371
BtrI	CACGTC	1 cut(s)	515
BtsCI	GGATG	4 cut(s)	128, 206, 487, 847
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	324
CfoI	GCGC	1 cut(s)	954
Cfr13I	GGNCC	1 cut(s)	370
CseI	GACGC	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	4 cut(s)	100, 374, 554, 850
DdeI	CTNAG	7 cut(s)	146, 270, 416, 693, 761, 865, 945
DpnI	GATC	2 cut(s)	306, 597
DpnII	GATC	2 cut(s)	304, 595
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	657
Eco31I	GGTCTC	1 cut(s)	716
Eco81I	CCTNAGG	1 cut(s)	945
Eco88I	CYCGRG	1 cut(s)	732
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	4 cut(s)	103, 377, 557, 853
FatI	CATG	4 cut(s)	99, 373, 553, 849
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	511
Fnu4HI	GCNGC	2 cut(s)	111, 582
FokI	GGATG	4 cut(s)	135, 213, 494, 854
Fsp4HI	GCNGC	2 cut(s)	111, 582
FspBI	CTAG	3 cut(s)	330, 711, 746
GlaI	GCGC	1 cut(s)	953
GluI	GCNGC	2 cut(s)	111, 582
GsaI	CCCAGC	1 cut(s)	841
HaeIII	GGCC	1 cut(s)	371
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	1 cut(s)	269
HhaI	GCGC	1 cut(s)	954
Hin1II	CATG	4 cut(s)	103, 377, 557, 853
Hin6I	GCGC	1 cut(s)	952
HinP1I	GCGC	1 cut(s)	952
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	4 cut(s)	8, 211, 770, 795
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	2 cut(s)	594, 933
Hpy166II	GTNNAC	4 cut(s)	66, 324, 379, 512
Hpy188I	TCNGA	5 cut(s)	271, 387, 417, 675, 982
Hpy188III	TCNNGA	3 cut(s)	746, 931, 947
Hpy8I	GTNNAC	4 cut(s)	66, 324, 379, 512
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	514
HpyCH4V	TGCA	6 cut(s)	191, 425, 464, 485, 557, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 188
HpyF3I	CTNAG	7 cut(s)	146, 270, 416, 693, 761, 865, 945
HpySE526I	ACGT	1 cut(s)	514
Hsp92II	CATG	4 cut(s)	103, 377, 557, 853
HspAI	GCGC	1 cut(s)	952
Kzo9I	GATC	2 cut(s)	304, 595
LmnI	GCTCC	2 cut(s)	649, 949
LpnPI	CCDG	7 cut(s)	192, 276, 381, 823, 860, 916, 932
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	3 cut(s)	97, 472, 832
MaeI	CTAG	3 cut(s)	330, 711, 746
MaeII	ACGT	1 cut(s)	514
MaeIII	GTNAC	2 cut(s)	881, 939
MalI	GATC	2 cut(s)	306, 597
MboI	GATC	2 cut(s)	304, 595
MboII	GAAGA	4 cut(s)	17, 86, 462, 515
MfeI	CAATTG	3 cut(s)	426, 459, 774
MflI	RGATCY	2 cut(s)	304, 595
MluCI	AATT	6 cut(s)	59, 420, 426, 459, 616, 774
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	3 cut(s)	11, 694, 954
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	5 cut(s)	186, 227, 246, 357, 903
MslI	CAYNNNNRTG	1 cut(s)	644
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	3 cut(s)	426, 459, 774
Mva1269I	GAATGC	2 cut(s)	147, 557
MwoI	GCNNNNNNNGC	2 cut(s)	151, 188
NciI	CCSGG	1 cut(s)	368
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	2 cut(s)	304, 595
NlaIII	CATG	4 cut(s)	103, 377, 557, 853
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	939
NsiI	ATGCAT	1 cut(s)	559
OliI	CACNNNNGTG	1 cut(s)	644
PaeR7I	CTCGAG	1 cut(s)	732
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	2 cut(s)	147, 557
PfeI	GAWTC	4 cut(s)	8, 211, 770, 795
PkrI	GCNGC	2 cut(s)	112, 583
PsiI	TTATAA	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	837
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	370
PspXI	VCTCGAGB	1 cut(s)	732
PsuI	RGATCY	2 cut(s)	304, 595
RseI	CAYNNNNRTG	1 cut(s)	644
SaqAI	TTAA	5 cut(s)	186, 227, 246, 357, 903
SatI	GCNGC	2 cut(s)	111, 582
Sau3AI	GATC	2 cut(s)	304, 595
Sau96I	GGNCC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	368
SfaNI	GCATC	3 cut(s)	97, 472, 832
SfcI	CTRYAG	1 cut(s)	92
Sfr274I	CTCGAG	1 cut(s)	732
SlaI	CTCGAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	4 cut(s)	226, 532, 633, 732
SmoI	CTYRAG	4 cut(s)	226, 532, 633, 732
Sse9I	AATT	6 cut(s)	59, 420, 426, 459, 616, 774
SsiI	CCGC	1 cut(s)	111
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	3 cut(s)	330, 711, 746
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	517
TaqI	TCGA	1 cut(s)	733
TasI	AATT	6 cut(s)	59, 420, 426, 459, 616, 774
TauI	GCSGC	1 cut(s)	113
TfiI	GAWTC	4 cut(s)	8, 211, 770, 795
Tru1I	TTAA	5 cut(s)	186, 227, 246, 357, 903
Tru9I	TTAA	5 cut(s)	186, 227, 246, 357, 903
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	939
TseI	GCWGC	1 cut(s)	581
Tsp45I	GTSAC	1 cut(s)	939
TspDTI	ATGAA	5 cut(s)	351, 423, 550, 585, 609
TspGWI	ACGGA	1 cut(s)	494
TspRI	CASTG	1 cut(s)	331
Vha464I	CTTAAG	1 cut(s)	226
XbaI	TCTAGA	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	511
XspI	CTAG	3 cut(s)	330, 711, 746
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.