Prupe.1G130600_v2.0.a1
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006437
Physical Location & Seq
Forward (+)
10143757 .. 10144751
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G130600.1

Sequence Viewer

Length: 678 bp
ATGTTGTTGCAACTCATGGTTGATGCTGCAAGCAGTGGATGGCGTGATGCTAATGGAATGCTAAGCAAGGCAACTGTAGAAACCAAAATACTTCCCAAGATTAATGAAAAACTCAGTCAGCTGAAGTACTTTAAAAGAGAATACCAAAAATATTCACAGCTTCTCCGTCACAGCTCTGGGTTTGGGTGGGATCCAACCACAAAGAAATTCACTACTCCTAAAGAAGTTTGGAAAGACTACTTTAAGGATCTGCAAATTGTAATTGGGAATGCAACTACTATTGGAAGAAACTCATTAGGATTGGGTGATGATACTGATGCAAGAATTTCTAGGGCGGAAGATAGACATGTTGGAATAGAGGACTTTGTCTTTGATGATGAAAATTTGGAAGGGAATGCTATCTCAAATGAGACCACCCAGCAAGCTATGAGAAGAATTAGCCATAGCATTGATTCAATTGCCACTGACTTCCGGGGAGTCCATAACCTATTGGCAAAAAAGGTAAAAAAAAGAGAGCAGCAAAGTTATATGTGGGATGCCATTAAGGAGACCCTAAATTTGGATGAACGTGCTTGTTACAAAGCGCTCTCTTTGTTGAATACTAACACAAAAAAGGATGCATTTTTGAAAATGTCTTATGAGGAGCGCTCAAATTGGATATCCTACAATTTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

226

Amino Acids

25.95

Weight (kDa)

8.46

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AclWI GGATC 3 cut(s) 185, 198, 255
AcsI RAATTY 4 cut(s) 206, 324, 382, 556
AcuI CTGAAG 1 cut(s) 143
AfaI GTAC 1 cut(s) 128
AfeI AGCGCT 2 cut(s) 585, 647
AfiI CCNNNNNNNGG 1 cut(s) 559
AflIII ACRYGT 1 cut(s) 346
AgsI TTSAA 3 cut(s) 456, 598, 628
AluBI AGCT 4 cut(s) 121, 160, 174, 425
AluI AGCT 4 cut(s) 121, 160, 174, 425
Alw26I GTCTC 2 cut(s) 404, 542
AlwI GGATC 3 cut(s) 185, 198, 255
Aor51HI AGCGCT 2 cut(s) 585, 647
ApeKI GCWGC 2 cut(s) 26, 517
ApoI RAATTY 4 cut(s) 206, 324, 382, 556
ArsI GACNNNNNNTTYG 4 cut(s) 353, 385, 541, 573
AseI ATTAAT 1 cut(s) 102
AspLEI GCGC 2 cut(s) 586, 648
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 1 cut(s) 317
BamHI GGATCC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 13, 529
BccI CCATC 1 cut(s) 33
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 404, 542
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 2 cut(s) 587, 649
BisI GCNGC 2 cut(s) 27, 518
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 2 cut(s) 28, 519
BmcAI AGTACT 1 cut(s) 128
Bme1390I CCNGG 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 473
BmsI GCATC 5 cut(s) 13, 37, 307, 526, 607
BplI GAGNNNNNCTC 2 cut(s) 632, 664
Bpu1102I GCTNAGC 1 cut(s) 62
BpuMI CCSGG 1 cut(s) 473
BsaI GGTCTC 2 cut(s) 404, 542
BsaJI CCNNGG 1 cut(s) 472
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 559
BseDI CCNNGG 1 cut(s) 472
BseGI GGATG 4 cut(s) 44, 541, 568, 622
BseLI CCNNNNNNNGG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 127
BseRI GAGGAG 1 cut(s) 656
BseXI GCAGC 2 cut(s) 13, 529
BseYI CCCAGC 1 cut(s) 417
BsiSI CCGG 1 cut(s) 472
BslI CCNNNNNNNGG 1 cut(s) 559
BsmAI GTCTC 2 cut(s) 404, 542
BsmI GAATGC 3 cut(s) 63, 274, 400
Bso31I GGTCTC 2 cut(s) 404, 542
Bsp143I GATC 2 cut(s) 190, 247
Bsp1720I GCTNAGC 1 cut(s) 62
BspACI CCGC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 3 cut(s) 185, 198, 255
BspTNI GGTCTC 2 cut(s) 404, 542
BssECI CCNNGG 1 cut(s) 472
BssMI GATC 2 cut(s) 190, 247
Bst4CI ACNGT 1 cut(s) 76
BstC8I GCNNGC 2 cut(s) 31, 423
BstDEI CTNAG 2 cut(s) 62, 113
BstF5I GGATG 4 cut(s) 44, 541, 568, 622
BstH2I RGCGCY 2 cut(s) 587, 649
BstHHI GCGC 2 cut(s) 586, 648
BstKTI GATC 2 cut(s) 193, 250
BstMAI GTCTC 2 cut(s) 404, 542
BstMBI GATC 2 cut(s) 190, 247
BstNSI RCATGY 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 13, 529
BstX2I RGATCY 2 cut(s) 190, 247
BstYI RGATCY 2 cut(s) 190, 247
BtsCI GGATG 4 cut(s) 44, 541, 568, 622
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 40, 462
Cac8I GCNNGC 2 cut(s) 31, 423
CfoI GCGC 2 cut(s) 586, 648
Csp6I GTAC 1 cut(s) 127
CviAII CATG 2 cut(s) 16, 347
CviJI RGCY 5 cut(s) 121, 160, 174, 425, 441
CviKI_1 RGCY 5 cut(s) 121, 160, 174, 425, 441
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 62, 113
DpnI GATC 2 cut(s) 192, 249
DpnII GATC 2 cut(s) 190, 247
DraI TTTAAA 1 cut(s) 133
EciI GGCGGA 1 cut(s) 350
Eco31I GGTCTC 2 cut(s) 404, 542
Eco32I GATATC 1 cut(s) 660
Eco47III AGCGCT 2 cut(s) 585, 647
Eco57I CTGAAG 1 cut(s) 143
EcoRV GATATC 1 cut(s) 660
EcoT22I ATGCAT 1 cut(s) 622
FaeI CATG 2 cut(s) 19, 350
FaiI YATR 8 cut(s) 17, 348, 428, 444, 483, 528, 530, 639
FatI CATG 2 cut(s) 15, 346
Fnu4HI GCNGC 2 cut(s) 27, 518
FokI GGATG 4 cut(s) 51, 548, 575, 629
Fsp4HI GCNGC 2 cut(s) 27, 518
FspBI CTAG 1 cut(s) 330
GlaI GCGC 2 cut(s) 585, 647
GluI GCNGC 2 cut(s) 27, 518
GsaI CCCAGC 1 cut(s) 421
HaeII RGCGCY 2 cut(s) 587, 649
HapII CCGG 1 cut(s) 472
HhaI GCGC 2 cut(s) 586, 648
Hin1II CATG 2 cut(s) 19, 350
Hin6I GCGC 2 cut(s) 584, 646
HinP1I GCGC 2 cut(s) 584, 646
HinfI GANTC 2 cut(s) 452, 477
HpaII CCGG 1 cut(s) 472
HphI GGTGA 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 6 cut(s) 10, 29, 253, 272, 320, 620
HpyF3I CTNAG 2 cut(s) 62, 113
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 2 cut(s) 19, 350
HspAI GCGC 2 cut(s) 584, 646
Kzo9I GATC 2 cut(s) 190, 247
LmnI GCTCC 1 cut(s) 643
LpnPI CCDG 3 cut(s) 162, 431, 485
Lsp1109I GCAGC 2 cut(s) 13, 529
LweI GCATC 5 cut(s) 13, 37, 307, 526, 607
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 2 cut(s) 167, 575
MalI GATC 2 cut(s) 192, 249
MboI GATC 2 cut(s) 190, 247
MboII GAAGA 3 cut(s) 297, 350, 444
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 2 cut(s) 190, 247
MlyI GAGTC 1 cut(s) 486
MmeI TCCRAC 2 cut(s) 218, 331
MnlI CCTC 2 cut(s) 352, 634
Mph1103I ATGCAT 1 cut(s) 622
MseI TTAA 4 cut(s) 102, 132, 243, 543
MspA1I CMGCKG 1 cut(s) 121
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 473
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 3 cut(s) 63, 274, 400
NciI CCSGG 1 cut(s) 473
NdeII GATC 2 cut(s) 190, 247
NlaIII CATG 2 cut(s) 19, 350
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 350
PciI ACATGT 1 cut(s) 346
PctI GAATGC 3 cut(s) 63, 274, 400
PfeI GAWTC 1 cut(s) 452
PflFI GACNNNGTC 1 cut(s) 365
PkrI GCNGC 2 cut(s) 28, 519
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PscI ACATGT 1 cut(s) 346
PshBI ATTAAT 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 417
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 2 cut(s) 190, 247
PsyI GACNNNGTC 1 cut(s) 365
PvuII CAGCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SaqAI TTAA 4 cut(s) 102, 132, 243, 543
SatI GCNGC 2 cut(s) 27, 518
Sau3AI GATC 2 cut(s) 190, 247
ScaI AGTACT 1 cut(s) 128
SchI GAGTC 1 cut(s) 486
ScrFI CCNGG 1 cut(s) 473
SetI ASST 7 cut(s) 123, 162, 176, 427, 489, 504, 571
SfaNI GCATC 5 cut(s) 13, 37, 307, 526, 607
SfcI CTRYAG 1 cut(s) 75
SsiI CCGC 1 cut(s) 335
SspI AATATT 1 cut(s) 152
SspMI CTAG 1 cut(s) 330
StyD4I CCNGG 1 cut(s) 471
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 571
TatI WGTACW 1 cut(s) 126
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 4 cut(s) 102, 132, 243, 543
Tru9I TTAA 4 cut(s) 102, 132, 243, 543
TscAI CASTG 2 cut(s) 40, 469
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 26, 517
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 3 cut(s) 120, 393, 579
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 2 cut(s) 40, 469
Tth111I GACNNNGTC 1 cut(s) 365
VspI ATTAAT 1 cut(s) 102
XapI RAATTY 4 cut(s) 206, 324, 382, 556
XceI RCATGY 1 cut(s) 350
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.