MD03G1212300.v1.1
MYB Family

nuclease activity

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
29099865 .. 29100251
387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1212300.v1.1.491

Sequence Viewer

Length: 261 bp
ATGAAAACATTGAAGGGTCGATTTCAATCAATGTGCCAGCTTTTTAGACACAGTTCTGGATTTGGTTGGGACCCTGTCACAAAGAAGTTCACAGCTAGTGATGAATCTCACCCAAAGAGTCAAGATATTCGCAAAGAGACATTTACAAACTATGAAGATTTGATGATTGTTTTTGGTGATGGAACAGCTAAAGGAAATAACTCGATTGGATTGGGTGATAAACTGATGCCACAACATATAGAGTTGAAGAAAGTAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

87

Amino Acids

9.69

Weight (kDa)

9.17

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 13, 26, 247
AluBI AGCT 3 cut(s) 40, 95, 188
AluI AGCT 3 cut(s) 40, 95, 188
Alw26I GTCTC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 70
AsuHPI GGTGA 3 cut(s) 101, 188, 227
AvaII GGWCC 1 cut(s) 70
BccI CCATC 1 cut(s) 173
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 2 cut(s) 96, 259
Bme18I GGWCC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 70
BmiI GGNNCC 2 cut(s) 71, 72
BmsI GCATC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 25
BslFI GGGAC 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 83
BspLI GGNNCC 2 cut(s) 71, 72
Bst4CI ACNGT 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 131
Cac8I GCNNGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 70
CviJI RGCY 4 cut(s) 40, 95, 188, 258
CviKI_1 RGCY 4 cut(s) 40, 95, 188, 258
Eco47I GGWCC 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 70
FaiI YATR 3 cut(s) 153, 237, 239
FaqI GGGAC 1 cut(s) 83
FspBI CTAG 2 cut(s) 96, 259
HinfI GANTC 2 cut(s) 104, 118
HphI GGTGA 3 cut(s) 101, 188, 227
Hpy166II GTNNAC 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 57, 122
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 7
HpyCH4III ACNGT 1 cut(s) 53
KflI GGGWCCC 1 cut(s) 70
LpnPI CCDG 3 cut(s) 42, 50, 87
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 96, 259
MaeIII GTNAC 1 cut(s) 76
MboII GAAGA 2 cut(s) 167, 259
MlyI GAGTC 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 71, 72
NmuCI GTSAC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 74
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 70
Psp5II RGGWCCY 1 cut(s) 70
PspN4I GGNNCC 2 cut(s) 71, 72
PspPI GGNCC 1 cut(s) 70
PspPPI RGGWCCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 74
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 127
SetI ASST 3 cut(s) 42, 97, 190
SfaNI GCATC 1 cut(s) 216
SgeI CNNG 6 cut(s) 49, 69, 86, 108, 134, 214
SinI GGWCC 1 cut(s) 70
SspMI CTAG 2 cut(s) 96, 259
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 19, 203
TfiI GAWTC 1 cut(s) 104
TseFI GTSAC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 3 cut(s) 17, 117, 168
Tth111I GACNNNGTC 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 70
XspI CTAG 2 cut(s) 96, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.