MD05G1104000.v1.1
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006437
Physical Location & Seq
Forward (+)
21680858 .. 21681613
756 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1104000.v1.1.491

Sequence Viewer

Length: 627 bp
ATGGGAGATTCACAACAAGAAAAGACAAAAGGAAACTATAATCAGTCGTCCGTGCAAGAGAACAACATGTTGTTAGAGCTACTTGTTGAGGTCGTAAACAATGGATGGCGTGATGCTAATGGCGTAATAAGCAAGAAGACCATAGAAGGCAAATTTGTTCCCGTGCTCAATGAAAAACTTGGGTGTAAAAAAACTGAAGATCATGTTAAGAACCATATGAAAACATTGAAGGGTCGATTTCAATCAATTTGCCAACTTTTTAGACATAGTTCTGGATTTGGGTGGGACCCTGTCACAAAAAAGTTTACAGCTAGTGATGAATCTCACCCAAAGAGTCAAGGTATTCACAAAGAGACATTTGCAGACTATGAAGATTTGATGACTATTTTTGGTGATGGAATAGCTAAAGGAAATAACTTAATTGGATTGGGCAATGATACTGATGCCACAACATATAGAGTTGAAGAAAGTAGGCCAGTCAGAGTAGACGAATTTCCTCCCTTTGATGAGAACGTCAAGCAACTTGATCCATTATTCCAAATGCCATCCTATGCATCATCTTTCCTAGATGCAAATTTTCCCGCTACTACACCCGTACAAAAGCTACTTCCAAGGAAAAGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

209

Amino Acids

23.44

Weight (kDa)

6.53

Isoelectric Point (pI)

44.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 19 - 107 6.8e-16 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 486
AciI CCGC 1 cut(s) 582
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 3 cut(s) 152, 491, 574
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 597
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 3 cut(s) 229, 242, 464
AluBI AGCT 4 cut(s) 79, 311, 404, 604
AluI AGCT 4 cut(s) 79, 311, 404, 604
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 1 cut(s) 521
AoxI GGCC 1 cut(s) 473
ApoI RAATTY 3 cut(s) 152, 491, 574
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 317, 404
AvaII GGWCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 168
BccI CCATC 3 cut(s) 99, 389, 553
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 2 cut(s) 312, 566
BglII AGATCT 1 cut(s) 620
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmiI GGNNCC 2 cut(s) 287, 288
BmsI GCATC 4 cut(s) 103, 433, 559, 563
BpiI GAAGAC 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 241
BsaJI CCNNGG 1 cut(s) 611
Bse1I ACTGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 611
BseGI GGATG 2 cut(s) 110, 545
BseJI GATNNNNATC 1 cut(s) 241
BseMI GCAATG 1 cut(s) 439
BseNI ACTGG 1 cut(s) 476
BshFI GGCC 1 cut(s) 475
BsiHKAI GWGCWC 1 cut(s) 168
BslFI GGGAC 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 1 cut(s) 475
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 3 cut(s) 199, 526, 620
BspACI CCGC 1 cut(s) 582
BspANI GGCC 1 cut(s) 475
BspLI GGNNCC 2 cut(s) 287, 288
BspPI GGATC 1 cut(s) 521
BsrDI GCAATG 1 cut(s) 439
BsrI ACTGG 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 3 cut(s) 199, 526, 620
BssT1I CCWWGG 1 cut(s) 611
BstF5I GGATG 2 cut(s) 110, 545
BstKTI GATC 3 cut(s) 202, 529, 623
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 3 cut(s) 199, 526, 620
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 620
BstYI RGATCY 1 cut(s) 620
BsuRI GGCC 1 cut(s) 475
BtsCI GGATG 2 cut(s) 110, 545
Cfr13I GGNCC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 596
CviAII CATG 2 cut(s) 67, 203
CviJI RGCY 5 cut(s) 79, 311, 404, 475, 604
CviKI_1 RGCY 5 cut(s) 79, 311, 404, 475, 604
CviQI GTAC 1 cut(s) 596
DpnI GATC 3 cut(s) 201, 528, 622
DpnII GATC 3 cut(s) 199, 526, 620
Eco130I CCWWGG 1 cut(s) 611
Eco47I GGWCC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 216
EcoO109I RGGNCCY 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 611
EcoT22I ATGCAT 1 cut(s) 556
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 2 cut(s) 70, 206
FaqI GGGAC 1 cut(s) 299
FatI CATG 2 cut(s) 66, 202
FauI CCCGC 1 cut(s) 589
FauNDI CATATG 1 cut(s) 216
FblI GTMKAC 1 cut(s) 486
FokI GGATG 2 cut(s) 117, 532
FspBI CTAG 2 cut(s) 312, 566
HaeIII GGCC 1 cut(s) 475
Hin1II CATG 2 cut(s) 70, 206
HinfI GANTC 3 cut(s) 8, 320, 334
HphI GGTGA 2 cut(s) 317, 404
Hpy166II GTNNAC 3 cut(s) 97, 306, 487
Hpy188I TCNGA 1 cut(s) 482
Hpy188III TCNNGA 2 cut(s) 273, 624
Hpy8I GTNNAC 3 cut(s) 97, 306, 487
HpyAV CCTTC 2 cut(s) 140, 223
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 4 cut(s) 55, 362, 554, 572
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 2 cut(s) 70, 206
KflI GGGWCCC 1 cut(s) 286
Kzo9I GATC 3 cut(s) 199, 526, 620
LpnPI CCDG 3 cut(s) 258, 303, 489
LweI GCATC 4 cut(s) 103, 433, 559, 563
MaeI CTAG 2 cut(s) 312, 566
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 201, 528, 622
MboI GATC 3 cut(s) 199, 526, 620
MboII GAAGA 4 cut(s) 148, 209, 383, 476
MflI RGATCY 1 cut(s) 620
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 5 cut(s) 152, 246, 420, 491, 574
MlyI GAGTC 1 cut(s) 343
MnlI CCTC 2 cut(s) 82, 507
Mph1103I ATGCAT 1 cut(s) 556
MseI TTAA 2 cut(s) 207, 419
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeI CATATG 1 cut(s) 216
NdeII GATC 3 cut(s) 199, 526, 620
NlaIII CATG 2 cut(s) 70, 206
NlaIV GGNNCC 2 cut(s) 287, 288
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 556
NspI RCATGY 1 cut(s) 70
PciI ACATGT 1 cut(s) 66
PfeI GAWTC 2 cut(s) 8, 320
PflFI GACNNNGTC 1 cut(s) 290
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
PpuMI RGGWCCY 1 cut(s) 286
PscI ACATGT 1 cut(s) 66
Psp5II RGGWCCY 1 cut(s) 286
PspN4I GGNNCC 2 cut(s) 287, 288
PspPI GGNCC 1 cut(s) 286
PspPPI RGGWCCY 1 cut(s) 286
PsuI RGATCY 1 cut(s) 620
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 597
RsaNI GTAC 1 cut(s) 596
SaqAI TTAA 2 cut(s) 207, 419
Sau3AI GATC 3 cut(s) 199, 526, 620
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 343
SduI GDGCHC 1 cut(s) 168
SetI ASST 7 cut(s) 81, 93, 313, 343, 406, 516, 606
SfaNI GCATC 4 cut(s) 103, 433, 559, 563
SinI GGWCC 1 cut(s) 286
Sse9I AATT 5 cut(s) 152, 246, 420, 491, 574
SsiI CCGC 1 cut(s) 582
SspMI CTAG 2 cut(s) 312, 566
StyI CCWWGG 1 cut(s) 611
TaiI ACGT 1 cut(s) 516
TaqI TCGA 1 cut(s) 235
TasI AATT 5 cut(s) 152, 246, 420, 491, 574
TfiI GAWTC 2 cut(s) 8, 320
Tru1I TTAA 2 cut(s) 207, 419
Tru9I TTAA 2 cut(s) 207, 419
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 4 cut(s) 186, 233, 333, 384
TspGWI ACGGA 1 cut(s) 40
Tth111I GACNNNGTC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 286
XapI RAATTY 3 cut(s) 152, 491, 574
XceI RCATGY 1 cut(s) 70
XmiI GTMKAC 1 cut(s) 486
XspI CTAG 2 cut(s) 312, 566
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.