pycom02g17640
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0006437
Physical Location & Seq
Forward (+)
15819754 .. 15820853
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g17640.1

Sequence Viewer

Length: 870 bp
ATGGGAGATTCACAACAAGAAAAGGGAAAAGGAAACTATAATCAATGGTCTGTGGAAGAGAGCAACATGTTGTTGCGACTACTTGTTGAGGTTGTAAAAAATGGATGGTGTGATGCTAATGGCATAATAAGCAAGCAGACTATAGAAGCCAAAATTGTTCCCGTGCTCAATGAAAAACTTGGGTGTCAAAAAACTCAAAATCATGTTAAGAACCGTGTGAAAACGTTGTGTCAACATTTTAGATTTGATGACGTATTTGGCAATGGAACAGCTAAAGGAAATAAATCAATTGGATTGGGTGATGACACTGATGCCATAACATATATAGTCGATGAAAGTAGGCCAATCAGAGTAAACGAATTTCCTCCACCTGATGAGAGCTTTGAGCAACTTGATCCATTATTCCAAAATCCATCATATGCATCATCTTTCCTAGATGCAAATTTGGAGGGTTCCGCTCTAACACCCATACAAAAGCTACTTCCAAAGAAAATATCTCGATCTGAGTCTGAGCTAAAATCAAATGTGACCACCCCTCACATCGTTCTTATAGAAAAAGTTTCCCTTGGAATGGATTCGATTGCTGCAATTGCCACTGAAATTCAAGCAATTCATAGCATAATGGAGAAAAGAGAAAAAGATAGAGAAAAAAAAAAGGAAAAGGAGAGAAAAGAAGAAAATAAAAACAACAATGTTTGGGATGCTTTCAAAGAGACTCCAAATTTTGATGCTCCCGTTTGTTACAAAGCAATTGCATTGGTTCAACATTTGGGAATGAAAATAAAGTTCTTGAAAATGACACCAAAAGAACACTCAAAGGTGTTCGGTATCATCTCCAAGATTTTGCTGGTAATGTTCGTGACCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

290

Amino Acids

32.62

Weight (kDa)

8.2

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 15 - 81 3.9e-06 Myb/SANT-like DNA-binding domain
At2g29880_C PF24769 232 - 273 1.8e-16 At2g29880 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 458
AciI CCGC 1 cut(s) 456
AclI AACGTT 1 cut(s) 224
AclWI GGATC 1 cut(s) 389
AcsI RAATTY 4 cut(s) 359, 442, 600, 721
AfiI CCNNNNNNNGG 1 cut(s) 571
AflIII ACRYGT 1 cut(s) 66
AgsI TTSAA 4 cut(s) 605, 709, 764, 793
AluBI AGCT 4 cut(s) 272, 381, 478, 514
AluI AGCT 4 cut(s) 272, 381, 478, 514
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 707
AlwI GGATC 1 cut(s) 389
AoxI GGCC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 584
ApoI RAATTY 4 cut(s) 359, 442, 600, 721
Asp700I GAANNNNTTC 1 cut(s) 574
AsuHPI GGTGA 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 571
BccI CCATC 2 cut(s) 99, 421
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 141
BisI GCNGC 1 cut(s) 585
BlsI GCNGC 1 cut(s) 586
BmiI GGNNCC 1 cut(s) 454
BmsI GCATC 6 cut(s) 103, 301, 427, 431, 691, 718
BsaJI CCNNGG 1 cut(s) 565
Bsc4I CCNNNNNNNGG 1 cut(s) 571
Bse3DI GCAATG 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 2 cut(s) 110, 706
BseLI CCNNNNNNNGG 1 cut(s) 571
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 495, 501
BseXI GCAGC 1 cut(s) 571
BshFI GGCC 1 cut(s) 343
BsiHKAI GWGCWC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 571
BsmAI GTCTC 1 cut(s) 707
BsnI GGCC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 168
Bsp143I GATC 2 cut(s) 394, 500
BspACI CCGC 1 cut(s) 456
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 2 cut(s) 496, 502
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 1 cut(s) 389
BsrBI CCGCTC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 2 cut(s) 394, 500
BssT1I CCWWGG 1 cut(s) 565
Bst4CI ACNGT 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 504, 510
BstF5I GGATG 2 cut(s) 110, 706
BstKTI GATC 2 cut(s) 397, 503
BstMAI GTCTC 1 cut(s) 707
BstMBI GATC 2 cut(s) 394, 500
BstMWI GCNNNNNNNGC 2 cut(s) 129, 590
BstNSI RCATGY 1 cut(s) 70
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 571
BsuRI GGCC 1 cut(s) 343
BtsCI GGATG 2 cut(s) 110, 706
BtsIMutI CAGTG 2 cut(s) 306, 594
Cac8I GCNNGC 1 cut(s) 134
CviAII CATG 2 cut(s) 67, 203
CviJI RGCY 6 cut(s) 149, 272, 343, 381, 478, 514
CviKI_1 RGCY 6 cut(s) 149, 272, 343, 381, 478, 514
DdeI CTNAG 2 cut(s) 504, 510
DpnI GATC 2 cut(s) 396, 502
DpnII GATC 2 cut(s) 394, 500
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 565
FaeI CATG 2 cut(s) 70, 206
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FatI CATG 2 cut(s) 66, 202
FauNDI CATATG 1 cut(s) 418
Fnu4HI GCNGC 1 cut(s) 585
FokI GGATG 2 cut(s) 117, 713
Fsp4HI GCNGC 1 cut(s) 585
FspBI CTAG 1 cut(s) 434
GluI GCNGC 1 cut(s) 585
HaeIII GGCC 1 cut(s) 343
Hin1II CATG 2 cut(s) 70, 206
HincII GTYRAC 1 cut(s) 233
HindII GTYRAC 1 cut(s) 233
HinfI GANTC 4 cut(s) 8, 506, 575, 715
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 2 cut(s) 233, 355
Hpy188I TCNGA 3 cut(s) 350, 505, 511
Hpy188III TCNNGA 3 cut(s) 498, 790, 859
Hpy8I GTNNAC 2 cut(s) 233, 355
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 2 cut(s) 224, 252
HpyCH4V TGCA 4 cut(s) 422, 440, 587, 755
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 590
HpyF3I CTNAG 2 cut(s) 504, 510
HpySE526I ACGT 2 cut(s) 224, 252
Hsp92II CATG 2 cut(s) 70, 206
Kzo9I GATC 2 cut(s) 394, 500
LmnI GCTCC 1 cut(s) 736
LpnPI CCDG 2 cut(s) 384, 833
Lsp1109I GCAGC 1 cut(s) 571
LweI GCATC 6 cut(s) 103, 301, 427, 431, 691, 718
MaeI CTAG 1 cut(s) 434
MaeII ACGT 2 cut(s) 224, 252
MaeIII GTNAC 3 cut(s) 526, 740, 859
MalI GATC 2 cut(s) 396, 502
MbiI CCGCTC 1 cut(s) 458
MboI GATC 2 cut(s) 394, 500
MboII GAAGA 2 cut(s) 68, 686
MfeI CAATTG 3 cut(s) 288, 588, 750
MhlI GDGCHC 1 cut(s) 168
MluCI AATT 9 cut(s) 153, 288, 359, 442, 588, 600, 609, 721, 750
MlyI GAGTC 2 cut(s) 515, 709
MnlI CCTC 4 cut(s) 82, 375, 442, 546
Mph1103I ATGCAT 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 574
MseI TTAA 1 cut(s) 207
MunI CAATTG 3 cut(s) 288, 588, 750
MwoI GCNNNNNNNGC 2 cut(s) 129, 590
NdeI CATATG 1 cut(s) 418
NdeII GATC 2 cut(s) 394, 500
NlaIII CATG 2 cut(s) 70, 206
NlaIV GGNNCC 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 526, 859
NsiI ATGCAT 1 cut(s) 424
NspI RCATGY 1 cut(s) 70
PciI ACATGT 1 cut(s) 66
PdmI GAANNNNTTC 1 cut(s) 574
PfeI GAWTC 2 cut(s) 8, 575
PkrI GCNGC 1 cut(s) 586
PleI GAGTC 2 cut(s) 514, 709
PpsI GAGTC 2 cut(s) 514, 709
PscI ACATGT 1 cut(s) 66
Psp1406I AACGTT 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 454
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 1 cut(s) 585
Sau3AI GATC 2 cut(s) 394, 500
SchI GAGTC 2 cut(s) 515, 709
SduI GDGCHC 1 cut(s) 168
SetI ASST 9 cut(s) 93, 227, 255, 274, 373, 383, 480, 516, 822
SfaNI GCATC 6 cut(s) 103, 301, 427, 431, 691, 718
SfcI CTRYAG 1 cut(s) 141
Sse9I AATT 9 cut(s) 153, 288, 359, 442, 588, 600, 609, 721, 750
SsiI CCGC 1 cut(s) 456
SspMI CTAG 1 cut(s) 434
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 2 cut(s) 227, 255
TaqI TCGA 3 cut(s) 330, 499, 578
TasI AATT 9 cut(s) 153, 288, 359, 442, 588, 600, 609, 721, 750
TfiI GAWTC 2 cut(s) 8, 575
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 313, 601
TseFI GTSAC 2 cut(s) 526, 859
TseI GCWGC 1 cut(s) 584
Tsp45I GTSAC 2 cut(s) 526, 859
TspDTI ATGAA 4 cut(s) 186, 348, 602, 791
TspRI CASTG 2 cut(s) 313, 601
XapI RAATTY 4 cut(s) 359, 442, 600, 721
XceI RCATGY 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 844
XmnI GAANNNNTTC 1 cut(s) 574
XspI CTAG 1 cut(s) 434
Zsp2I ATGCAT 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.