Prupe.6G020000_v2.0.a1
MYB Family

At2g29880-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0006437
Physical Location & Seq
Forward (+)
1595344 .. 1596368
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G020000.1

Sequence Viewer

Length: 876 bp
ATGCTGTTAGAACTAATGGTTGATGCTGCCAACCGTGGATGGCGCGATTCTAATGGTTTGCTAAGCAAGCAAATAGTAGAAAGCAAGATACTTCCTGTTCTTAATGCAAAACTTGGATGCCAAAAAACTTATCATCAATCTCAGAGCCATCTGAAATATTCTGGATTTGAGTGGGACTCCGGCTCAAAGAAATTCACAGCTATCGAAGAAGTATGGCAAAATTACTTTAAGTCTCATCCAAGTCAAGTGCATCTTCAAAGATATACATTTGCAGAATATGAGGATTTGGTAATTGCAATTGGCAATGGAACAGCTGCTGGGAAAAACTCAATTGGACTTGTTGATGATACTGATGCTAGAACGTATGAAGTTGGAGAAATGAGACCTACTAGATTGCAGGATACCAATGAGGCATTTGTACCAAGTCAAAATGAAACATCATACCAATCTTTGTCGTCTGGTAATTTTACTTCATCACCTTTTCTAGACACAAATTTGGAGGCTGCATTAGAAAAGCTCCCTCAAAGAAAGAAACCTAAAACTGAGTCTGAAGCAAATAATAATTCAGTTGAGACCATAACTCGAGCTGAACTGGTAGAAAAAGTTTATGTGGGCATAGATTCAATTGCTGCAATTACCACTGAAATTCGAGGAATACATAGCCTAATGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCAACAATGTTTGGGATGCTATCAATGAGACTCCGAACTTGGATAATCGTGCTCGTTACAAAGCACTTGGACTGGTTCATAAGTTGGGAATGAAAAATGCATTCCTAAAAATGTTACCTGAAGAGCGCTCAGAGTGGATACTATACAATATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

292

Amino Acids

33.34

Weight (kDa)

5.69

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AcsI RAATTY 3 cut(s) 191, 493, 645
AcuI CTGAAG 2 cut(s) 570, 858
AfaI GTAC 1 cut(s) 420
AfeI AGCGCT 1 cut(s) 845
AgsI TTSAA 2 cut(s) 257, 624
AluBI AGCT 4 cut(s) 200, 314, 517, 587
AluI AGCT 4 cut(s) 200, 314, 517, 587
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 4 cut(s) 237, 376, 566, 740
AlwNI CAGNNNCTG 1 cut(s) 317
Ama87I CYCGRG 1 cut(s) 582
Aor51HI AGCGCT 1 cut(s) 845
ApeKI GCWGC 4 cut(s) 26, 314, 503, 629
ApoI RAATTY 3 cut(s) 191, 493, 645
AspLEI GCGC 2 cut(s) 45, 846
AsuHPI GGTGA 1 cut(s) 468
AvaI CYCGRG 1 cut(s) 582
BarI GAAGNNNNNNTAC 2 cut(s) 454, 486
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 4 cut(s) 13, 301, 490, 616
BccI CCATC 2 cut(s) 33, 156
BciVI GTATCC 2 cut(s) 394, 849
BcoDI GTCTC 4 cut(s) 237, 376, 566, 740
BfaI CTAG 3 cut(s) 357, 390, 485
BfoI RGCGCY 1 cut(s) 847
BfuI GTATCC 2 cut(s) 394, 849
BisI GCNGC 4 cut(s) 27, 315, 504, 630
BlpI GCTNAGC 1 cut(s) 62
BlsI GCNGC 4 cut(s) 28, 316, 505, 631
BmeT110I CYCGRG 1 cut(s) 582
BmsI GCATC 5 cut(s) 13, 107, 259, 343, 724
BplI GAGNNNNNCTC 2 cut(s) 161, 193
Bpu1102I GCTNAGC 1 cut(s) 62
BsaI GGTCTC 2 cut(s) 376, 566
BsaJI CCNNGG 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 597, 795
Bse3DI GCAATG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 4 cut(s) 44, 122, 235, 739
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 3 cut(s) 155, 534, 861
BseNI ACTGG 2 cut(s) 597, 795
BseXI GCAGC 4 cut(s) 13, 301, 490, 616
BseYI CCCAGC 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 45
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 1 cut(s) 582
BsiSI CCGG 1 cut(s) 180
BslFI GGGAC 1 cut(s) 188
BsmAI GTCTC 4 cut(s) 237, 376, 566, 740
BsmFI GGGAC 1 cut(s) 188
BsmI GAATGC 1 cut(s) 818
Bso31I GGTCTC 2 cut(s) 376, 566
BsoBI CYCGRG 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 772
Bsp1720I GCTNAGC 1 cut(s) 62
BspCNI CTCAG 3 cut(s) 154, 535, 860
BspFNI CGCG 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 834
BspTNI GGTCTC 2 cut(s) 376, 566
BsrDI GCAATG 1 cut(s) 310
BsrI ACTGG 2 cut(s) 597, 795
BssECI CCNNGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 834
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 4 cut(s) 62, 141, 543, 847
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 4 cut(s) 44, 122, 235, 739
BstFNI CGCG 1 cut(s) 45
BstH2I RGCGCY 1 cut(s) 847
BstHHI GCGC 2 cut(s) 45, 846
BstMAI GTCTC 4 cut(s) 237, 376, 566, 740
BstMWI GCNNNNNNNGC 1 cut(s) 67
BstUI CGCG 1 cut(s) 45
BstV1I GCAGC 4 cut(s) 13, 301, 490, 616
BsuI GTATCC 2 cut(s) 394, 849
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 4 cut(s) 44, 122, 235, 739
BtsIMutI CAGTG 1 cut(s) 639
Cac8I GCNNGC 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 2 cut(s) 45, 846
Csp6I GTAC 1 cut(s) 419
CviJI RGCY 8 cut(s) 147, 183, 200, 314, 503, 517, 587, 663
CviKI_1 RGCY 8 cut(s) 147, 183, 200, 314, 503, 517, 587, 663
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 4 cut(s) 62, 141, 543, 847
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Eco31I GGTCTC 2 cut(s) 376, 566
Eco47III AGCGCT 1 cut(s) 845
Eco57I CTGAAG 2 cut(s) 570, 858
Eco88I CYCGRG 1 cut(s) 582
EcoT22I ATGCAT 1 cut(s) 820
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 1 cut(s) 188
Fnu4HI GCNGC 4 cut(s) 27, 315, 504, 630
FokI GGATG 4 cut(s) 51, 129, 222, 746
Fsp4HI GCNGC 4 cut(s) 27, 315, 504, 630
FspBI CTAG 3 cut(s) 357, 390, 485
GlaI GCGC 2 cut(s) 44, 845
GluI GCNGC 4 cut(s) 27, 315, 504, 630
GsaI CCCAGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 847
HapII CCGG 1 cut(s) 180
HhaI GCGC 2 cut(s) 45, 846
Hin6I GCGC 2 cut(s) 43, 844
HinP1I GCGC 2 cut(s) 43, 844
HinfI GANTC 5 cut(s) 47, 176, 545, 620, 748
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 468
Hpy188I TCNGA 5 cut(s) 144, 153, 550, 753, 850
Hpy188III TCNNGA 2 cut(s) 162, 485
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 8 cut(s) 107, 250, 272, 296, 397, 506, 632, 818
HpyF10VI GCNNNNNNNGC 1 cut(s) 67
HpyF3I CTNAG 4 cut(s) 62, 141, 543, 847
HpySE526I ACGT 1 cut(s) 362
HspAI GCGC 2 cut(s) 43, 844
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 1 cut(s) 522
LpnPI CCDG 9 cut(s) 108, 147, 193, 303, 383, 444, 578, 776, 849
Lsp1109I GCAGC 4 cut(s) 13, 301, 490, 616
LweI GCATC 5 cut(s) 13, 107, 259, 343, 724
MaeI CTAG 3 cut(s) 357, 390, 485
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 2 cut(s) 773, 831
MboII GAAGA 3 cut(s) 218, 245, 851
MfeI CAATTG 3 cut(s) 297, 330, 624
MhlI GDGCHC 1 cut(s) 772
MlyI GAGTC 3 cut(s) 170, 554, 742
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 5 cut(s) 274, 403, 493, 531, 644
Mph1103I ATGCAT 1 cut(s) 820
MseI TTAA 2 cut(s) 102, 228
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 1 cut(s) 180
MunI CAATTG 3 cut(s) 297, 330, 624
Mva1269I GAATGC 1 cut(s) 818
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 820
PaeR7I CTCGAG 1 cut(s) 582
PciSI GCTCTTC 1 cut(s) 834
PctI GAATGC 1 cut(s) 818
PfeI GAWTC 2 cut(s) 47, 620
PkrI GCNGC 4 cut(s) 28, 316, 505, 631
PleI GAGTC 3 cut(s) 170, 553, 742
PpsI GAGTC 3 cut(s) 170, 553, 742
PspFI CCCAGC 1 cut(s) 317
PspXI VCTCGAGB 1 cut(s) 582
PstNI CAGNNNCTG 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 2 cut(s) 102, 228
SatI GCNGC 4 cut(s) 27, 315, 504, 630
SchI GAGTC 3 cut(s) 170, 554, 742
SduI GDGCHC 1 cut(s) 772
SetI ASST 9 cut(s) 202, 316, 365, 388, 481, 519, 538, 589, 838
SfaNI GCATC 5 cut(s) 13, 107, 259, 343, 724
Sfr274I CTCGAG 1 cut(s) 582
SlaI CTCGAG 1 cut(s) 582
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SspI AATATT 1 cut(s) 158
SspMI CTAG 3 cut(s) 357, 390, 485
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 365
TaqI TCGA 3 cut(s) 204, 583, 649
TfiI GAWTC 2 cut(s) 47, 620
Tru1I TTAA 2 cut(s) 102, 228
Tru9I TTAA 2 cut(s) 102, 228
TscAI CASTG 1 cut(s) 646
TseI GCWGC 4 cut(s) 26, 314, 503, 629
TspDTI ATGAA 5 cut(s) 381, 447, 462, 785, 824
TspRI CASTG 1 cut(s) 646
XapI RAATTY 3 cut(s) 191, 493, 645
XbaI TCTAGA 1 cut(s) 484
XhoI CTCGAG 1 cut(s) 582
XspI CTAG 3 cut(s) 357, 390, 485
Zsp2I ATGCAT 1 cut(s) 820
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.