Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006437

Physical Location & Seq

Genomic Coordinates Forward (+)

10491694 .. 10492680

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G133700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTGTTGCAACTCATGGTTGATGCTGCAAGTCGTGGATGGCGTGATGCTAATGGAATGCTAAGCAAGGCAACTGTAGAAACCAAAATACTCCTCAAGATTAATGAAAAACTTAGCTTCTCCGTCACAGCTCTGGGTTTGGGTGGGATCCAACCATTCACAGCTCCTGAAGAAGTTTGGAAAGACTACTTCAAGTCCCACCCAAAAGACACAAATATTCAAACAAAAACTAGCGAGGACTGTGAGGATATGCAAATTGTAATTGGGAATGCAACTGCTATTGGAAGAAACTCATTAGGATTGGGTGATGATACTGATGCAAGAACTTTTAGGGCGGATGATAGACATGTTGGAATAGAGGACTTTGTCTTTGATGATGAAAGTAAAGCTTTTATACCAAATCATAATAAACCACCACACCAAGATCCACCACTCGGACATTCTTCTTCATCCTTACCGTTTCAGGCCACTAATTGTGAAGATTTGGAAGGGAATGCTATCTCAAATGAGACCACCCAGCAAGCTATGGGAAGAATTAGCCTTAGCATTGATTCAATTACTACCGACTTCCGGGGAAATTATATGTGGGATGCCATTAAGGAGACCCCAAATTTGGATGAACGTGCTCGTTATAAAGCGCCTTCTTTGTTGAATACTAACACAAAAAAGGATGCATTTTTGAAAATGTCTCCTCAAGAGCGCTCAAATTGGATATCCTACAACTTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

244

Amino Acids

27.13

Weight (kDa)

5.03

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30140 AT1G30140 AT2G29880 AT5G27260
malus_domestica	MD03G1206200.v1.1 MD03G1212300.v1.1 MD05G1104000.v1.1 MD05G1188000.v1.1 MD06G1083900.v1.1 MD08G1125600.v1.1 MD12G1017200.v1.1 MD16G1269500.v1.1
prunus_persica	Prupe.1G130600_v2.0.a1 Prupe.1G170700_v2.0.a1 Prupe.1G229800_v2.0.a1 Prupe.2G168600_v2.0.a1 Prupe.3G122800_v2.0.a1 Prupe.4G156100_v2.0.a1 Prupe.4G168300_v2.0.a1 Prupe.6G020000_v2.0.a1 Prupe.6G133700_v2.0.a1 Prupe.6G164800_v2.0.a1 Prupe.7G073100_v2.0.a1 Prupe.7G105100_v2.0.a1
pyrus_communis	pycom02g17640 pycom08g12750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	3 cut(s)	142, 155, 419
AcsI	RAATTY	1 cut(s)	610
AcuI	CTGAAG	1 cut(s)	189
AfeI	AGCGCT	1 cut(s)	701
AfiI	CCNNNNNNNGG	3 cut(s)	434, 570, 613
AflIII	ACRYGT	1 cut(s)	346
AgsI	TTSAA	5 cut(s)	193, 221, 555, 652, 682
AluBI	AGCT	5 cut(s)	117, 131, 164, 389, 524
AluI	AGCT	5 cut(s)	117, 131, 164, 389, 524
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	3 cut(s)	503, 596, 693
AlwI	GGATC	3 cut(s)	142, 155, 419
AlwNI	CAGNNNCTG	1 cut(s)	167
Aor51HI	AGCGCT	1 cut(s)	701
AoxI	GGCC	1 cut(s)	465
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	610
ArsI	GACNNNNNNTTYG	4 cut(s)	353, 385, 595, 627
AseI	ATTAAT	1 cut(s)	102
AspLEI	GCGC	2 cut(s)	640, 702
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	628
BbvI	GCAGC	1 cut(s)	13
BccI	CCATC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	3 cut(s)	503, 596, 693
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	75
BfoI	RGCGCY	2 cut(s)	641, 703
BisI	GCNGC	1 cut(s)	27
BlpI	GCTNAGC	1 cut(s)	62
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	5 cut(s)	13, 37, 307, 580, 661
Bpu10I	CCTNAGC	1 cut(s)	542
Bpu1102I	GCTNAGC	1 cut(s)	62
BpuEI	CTTGAG	2 cut(s)	80, 678
BpuMI	CCSGG	1 cut(s)	572
BsaI	GGTCTC	2 cut(s)	503, 596
BsaJI	CCNNGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	3 cut(s)	434, 570, 613
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	6 cut(s)	44, 343, 449, 595, 622, 676
BseLI	CCNNNNNNNGG	3 cut(s)	434, 570, 613
BseRI	GAGGAG	2 cut(s)	83, 681
BseXI	GCAGC	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	516
BshFI	GGCC	1 cut(s)	467
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	571
BslFI	GGGAC	1 cut(s)	181
BslI	CCNNNNNNNGG	3 cut(s)	434, 570, 613
BsmAI	GTCTC	3 cut(s)	503, 596, 693
BsmFI	GGGAC	1 cut(s)	181
BsmI	GAATGC	3 cut(s)	63, 274, 499
BsnI	GGCC	1 cut(s)	467
Bso31I	GGTCTC	2 cut(s)	503, 596
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp143I	GATC	2 cut(s)	147, 424
Bsp1720I	GCTNAGC	1 cut(s)	62
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	1 cut(s)	467
BspLI	GGNNCC	1 cut(s)	149
BspPI	GGATC	3 cut(s)	142, 155, 419
BspTNI	GGTCTC	2 cut(s)	503, 596
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	2 cut(s)	147, 424
Bst4CI	ACNGT	3 cut(s)	76, 242, 459
BstC8I	GCNNGC	1 cut(s)	522
BstDEI	CTNAG	3 cut(s)	62, 113, 542
BstF5I	GGATG	6 cut(s)	44, 343, 449, 595, 622, 676
BstH2I	RGCGCY	2 cut(s)	641, 703
BstHHI	GCGC	2 cut(s)	640, 702
BstKTI	GATC	2 cut(s)	150, 427
BstMAI	GTCTC	3 cut(s)	503, 596, 693
BstMBI	GATC	2 cut(s)	147, 424
BstNSI	RCATGY	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	13
BstX2I	RGATCY	2 cut(s)	147, 424
BstYI	RGATCY	2 cut(s)	147, 424
BsuRI	GGCC	1 cut(s)	467
BtsCI	GGATG	6 cut(s)	44, 343, 449, 595, 622, 676
Cac8I	GCNNGC	1 cut(s)	522
CaiI	CAGNNNCTG	1 cut(s)	167
CfoI	GCGC	2 cut(s)	640, 702
CviAII	CATG	2 cut(s)	16, 347
CviJI	RGCY	7 cut(s)	117, 131, 164, 389, 467, 524, 540
CviKI_1	RGCY	7 cut(s)	117, 131, 164, 389, 467, 524, 540
DdeI	CTNAG	3 cut(s)	62, 113, 542
DpnI	GATC	2 cut(s)	149, 426
DpnII	GATC	2 cut(s)	147, 424
EciI	GGCGGA	1 cut(s)	350
Eco31I	GGTCTC	2 cut(s)	503, 596
Eco32I	GATATC	1 cut(s)	714
Eco47III	AGCGCT	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	714
EcoT22I	ATGCAT	1 cut(s)	676
FaeI	CATG	2 cut(s)	19, 350
FaiI	YATR	9 cut(s)	17, 251, 348, 395, 405, 527, 582, 584, 633
FalI	AAGNNNNNCTT	2 cut(s)	373, 405
FaqI	GGGAC	1 cut(s)	181
FatI	CATG	2 cut(s)	15, 346
Fnu4HI	GCNGC	1 cut(s)	27
FokI	GGATG	6 cut(s)	51, 350, 436, 602, 629, 683
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	2 cut(s)	639, 701
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	520
HaeII	RGCGCY	2 cut(s)	641, 703
HaeIII	GGCC	1 cut(s)	467
HapII	CCGG	1 cut(s)	571
HhaI	GCGC	2 cut(s)	640, 702
Hin1II	CATG	2 cut(s)	19, 350
Hin6I	GCGC	2 cut(s)	638, 700
HinP1I	GCGC	2 cut(s)	638, 700
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	1 cut(s)	551
HpaII	CCGG	1 cut(s)	571
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	3 cut(s)	97, 167, 695
HpyAV	CCTTC	2 cut(s)	482, 651
HpyCH4III	ACNGT	3 cut(s)	76, 242, 459
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	6 cut(s)	10, 29, 253, 272, 320, 674
HpyF3I	CTNAG	3 cut(s)	62, 113, 542
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	2 cut(s)	19, 350
HspAI	GCGC	2 cut(s)	638, 700
Kzo9I	GATC	2 cut(s)	147, 424
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	119, 180, 449, 530, 584
Lsp1109I	GCAGC	1 cut(s)	13
LweI	GCATC	5 cut(s)	13, 37, 307, 580, 661
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	622
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	2 cut(s)	149, 426
MboI	GATC	2 cut(s)	147, 424
MboII	GAAGA	6 cut(s)	182, 297, 435, 438, 491, 543
MflI	RGATCY	2 cut(s)	147, 424
MhlI	GDGCHC	1 cut(s)	628
MluCI	AATT	8 cut(s)	255, 261, 472, 534, 555, 577, 610, 706
MmeI	TCCRAC	2 cut(s)	175, 331
MnlI	CCTC	5 cut(s)	104, 229, 238, 352, 702
Mph1103I	ATGCAT	1 cut(s)	676
MseI	TTAA	2 cut(s)	102, 597
MspI	CCGG	1 cut(s)	571
MspR9I	CCNGG	1 cut(s)	572
Mva1269I	GAATGC	3 cut(s)	63, 274, 499
NciI	CCSGG	1 cut(s)	572
NdeII	GATC	2 cut(s)	147, 424
NlaIII	CATG	2 cut(s)	19, 350
NlaIV	GGNNCC	1 cut(s)	149
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	1 cut(s)	350
PciI	ACATGT	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PctI	GAATGC	3 cut(s)	63, 274, 499
PfeI	GAWTC	1 cut(s)	551
PflFI	GACNNNGTC	1 cut(s)	365
PkrI	GCNGC	1 cut(s)	28
PscI	ACATGT	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	102
PsiI	TTATAA	1 cut(s)	633
PspFI	CCCAGC	1 cut(s)	516
PspN4I	GGNNCC	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	167
PsuI	RGATCY	2 cut(s)	147, 424
PsyI	GACNNNGTC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	102, 597
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	2 cut(s)	147, 424
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	628
SetI	ASST	6 cut(s)	119, 133, 166, 391, 526, 625
SfaNI	GCATC	5 cut(s)	13, 37, 307, 580, 661
SfcI	CTRYAG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	95, 693
SmoI	CTYRAG	2 cut(s)	95, 693
Sse9I	AATT	8 cut(s)	255, 261, 472, 534, 555, 577, 610, 706
SsiI	CCGC	1 cut(s)	335
SspI	AATATT	1 cut(s)	217
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	76, 242, 459
TaiI	ACGT	1 cut(s)	625
TasI	AATT	8 cut(s)	255, 261, 472, 534, 555, 577, 610, 706
TfiI	GAWTC	1 cut(s)	551
Tru1I	TTAA	2 cut(s)	102, 597
Tru9I	TTAA	2 cut(s)	102, 597
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	120, 393, 438, 633
TspGWI	ACGGA	1 cut(s)	112
Tth111I	GACNNNGTC	1 cut(s)	365
VspI	ATTAAT	1 cut(s)	102
XapI	RAATTY	1 cut(s)	610
XceI	RCATGY	1 cut(s)	350
XspI	CTAG	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.