Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005034

Physical Location & Seq

Genomic Coordinates Forward (+)

10936923 .. 10938099

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G30800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCCACCTCAAGCCATCTCTTTCTCCTCTTCCTCATCACCACCGTCACATTCCTCACTTCCGCCGCTTCTCCAGCGTATCTCACGTCCCAAGATCACCAACACGCCGACAGAATCATCGAAGCAATGATCGGAGCCGGAGATTTCCGTGACTGGGCCGCAGATTTTCTCTCCGCCGTCGATGACCAATTCGGTATCCCTCTCTCCGCCACTATCTTCATCCCAAGCGATTTCGACTCCGCTGATATCTCCTCCTCCTCTTCCTCCACCACTGGCAACAACAACGCTAATCCCCGTCGTCTCTCCGTCGCTTACCACATCGTACCTCAACGACTCTCCTTCACAGATCTTCGTCTCTTCAAACCACTCTCTCGTCTTCCGACTCTTCTCCCCGGAAACACAATCGTCGTCACTAACAACTCTGTTCCCGGTTACGCACTCGACGGCGTTCTTGTCTCTGAACCGGATCTTTTCCTCTCTTCTTCAATTGCTATTCACGGCGTTGCTTCGTCTCTTGATTTCTCACGTTACGGCGATTTTGGTACCGGTGATACTACTTTAGCTGATAGTCTCCGTCCTTGGCCTTTTCAGCCTTCTAGTCGCCGTCGTCATCCCGATGGATCCAACAGTGACACCAATCAAACCTCTGCTTCTGCATCCACAGTACATTTCTCAACTGGCTCGTTCTTGCTTCCATTGGCGACTCTGGCTCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

239

Amino Acids

25.65

Weight (kDa)

5.12

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30800 AT4G12950 AT4G29980
fragaria_vesca	FvH4_1g24910 FvH4_3g11440 FvH4_3g19970 FvH4_5g18240 FvH4_5g21920 FvH4_6g29350
malus_domestica	MD00G1097400.v1.1
prunus_persica	Prupe.4G102300_v2.0.a1
pyrus_communis	pycom05g24700
rosa_laevigata	RLG00000031490 RLG00000032358
rosa_multiflora	Rmu_sc0017459.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059350
rosa_rugosa	Rorug04G0431000 Rorug04G0432100 Rorug05G0042200
rosa_samantha	Rh4BG224100 Rh4CG235000 Rh4DG220900 Rh5BG055700 Rh5CG067100 Rh5CG067200 Rh5CG078900 Rh5DG054700 Rh5DG066900
rosa_wichuraiana	Rw4G019090 Rw5G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	1 cut(s)	542
AciI	CCGC	6 cut(s)	63, 66, 159, 174, 207, 240
AclWI	GGATC	3 cut(s)	474, 615, 628
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	324, 544, 666
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgeI	ACCGGT	1 cut(s)	545
AgsI	TTSAA	2 cut(s)	361, 486
AjiI	CACGTC	1 cut(s)	87
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw26I	GTCTC	5 cut(s)	305, 359, 460, 516, 575
AlwI	GGATC	3 cut(s)	474, 615, 628
AoxI	GGCC	3 cut(s)	3, 156, 581
AsiGI	ACCGGT	1 cut(s)	545
Asp718I	GGTACC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	2 cut(s)	393, 429
AsuHPI	GGTGA	3 cut(s)	31, 89, 560
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	368
BccI	CCATC	2 cut(s)	24, 611
BceAI	ACGGC	5 cut(s)	161, 460, 514, 547, 588
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	2 cut(s)	393, 429
BcoDI	GTCTC	5 cut(s)	305, 359, 460, 516, 575
BfaI	CTAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	2 cut(s)	66, 159
BlsI	GCNGC	2 cut(s)	67, 160
Bme1390I	CCNGG	2 cut(s)	393, 429
BmgBI	CACGTC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	3 cut(s)	136, 544, 622
BmrFI	CCNGG	2 cut(s)	393, 429
BmrI	ACTGGG	1 cut(s)	163
BmsI	GCATC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	57
BpuMI	CCSGG	2 cut(s)	393, 429
BsaJI	CCNNGG	2 cut(s)	391, 578
BsaWI	WCCGGW	2 cut(s)	463, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	545
Bse1I	ACTGG	3 cut(s)	158, 277, 682
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	391, 578
BseGI	GGATG	3 cut(s)	219, 610, 656
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMI	GCAATG	1 cut(s)	132
BseNI	ACTGG	3 cut(s)	158, 277, 682
BseRI	GAGGAG	4 cut(s)	17, 241, 244, 247
BshFI	GGCC	3 cut(s)	5, 158, 583
BshNI	GGYRCC	1 cut(s)	542
BshTI	ACCGGT	1 cut(s)	545
BsiSI	CCGG	5 cut(s)	138, 393, 429, 464, 546
BslFI	GGGAC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	5 cut(s)	305, 359, 460, 516, 575
BsmBI	CGTCTC	3 cut(s)	305, 359, 516
BsmFI	GGGAC	1 cut(s)	73
BsnI	GGCC	3 cut(s)	5, 158, 583
Bsp143I	GATC	5 cut(s)	94, 129, 346, 466, 620
BspACI	CCGC	6 cut(s)	63, 66, 159, 174, 207, 240
BspANI	GGCC	3 cut(s)	5, 158, 583
BspLI	GGNNCC	3 cut(s)	136, 544, 622
BspPI	GGATC	3 cut(s)	474, 615, 628
BspT107I	GGYRCC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	545
BsrI	ACTGG	3 cut(s)	158, 277, 682
BssAI	RCCGGY	1 cut(s)	545
BssECI	CCNNGG	2 cut(s)	391, 578
BssMI	GATC	5 cut(s)	94, 129, 346, 466, 620
BssT1I	CCWWGG	1 cut(s)	578
Bst4CI	ACNGT	3 cut(s)	46, 629, 664
Bst6I	CTCTTC	5 cut(s)	35, 265, 362, 390, 484
BstF5I	GGATG	3 cut(s)	219, 610, 656
BstKTI	GATC	5 cut(s)	97, 132, 349, 469, 623
BstMAI	GTCTC	5 cut(s)	305, 359, 460, 516, 575
BstMBI	GATC	5 cut(s)	94, 129, 346, 466, 620
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 589, 707
BstSCI	CCNGG	2 cut(s)	391, 427
BstV2I	GAAGAC	1 cut(s)	368
BstX2I	RGATCY	3 cut(s)	346, 466, 620
BstYI	RGATCY	3 cut(s)	346, 466, 620
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	5, 158, 583
BtrI	CACGTC	1 cut(s)	87
BtsCI	GGATG	3 cut(s)	219, 610, 656
BtsIMutI	CAGTG	2 cut(s)	270, 634
Cfr10I	RCCGGY	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	323, 543, 665
CspAI	ACCGGT	1 cut(s)	545
CviJI	RGCY	9 cut(s)	5, 15, 137, 158, 563, 583, 592, 681, 710
CviKI_1	RGCY	9 cut(s)	5, 15, 137, 158, 563, 583, 592, 681, 710
CviQI	GTAC	3 cut(s)	323, 543, 665
DpnI	GATC	5 cut(s)	96, 131, 348, 468, 622
DpnII	GATC	5 cut(s)	94, 129, 346, 466, 620
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	35, 265, 362, 390, 484
EarI	CTCTTC	5 cut(s)	35, 265, 362, 390, 484
EciI	GGCGGA	3 cut(s)	52, 163, 196
Eco130I	CCWWGG	1 cut(s)	578
Eco32I	GATATC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
Esp3I	CGTCTC	3 cut(s)	305, 359, 516
FaqI	GGGAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	66, 159
FokI	GGATG	3 cut(s)	206, 597, 643
Fsp4HI	GCNGC	2 cut(s)	66, 159
FspBI	CTAG	1 cut(s)	597
GluI	GCNGC	2 cut(s)	66, 159
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	5, 158, 583
HapII	CCGG	5 cut(s)	138, 393, 429, 464, 546
HinfI	GANTC	5 cut(s)	114, 236, 333, 382, 703
HpaII	CCGG	5 cut(s)	138, 393, 429, 464, 546
HphI	GGTGA	3 cut(s)	31, 89, 560
Hpy188I	TCNGA	4 cut(s)	134, 381, 460, 719
Hpy188III	TCNNGA	2 cut(s)	515, 614
Hpy99I	CGWCG	6 cut(s)	182, 300, 311, 410, 446, 609
HpyAV	CCTTC	2 cut(s)	349, 603
HpyCH4III	ACNGT	3 cut(s)	46, 629, 664
HpyCH4IV	ACGT	2 cut(s)	86, 526
HpyCH4V	TGCA	1 cut(s)	656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 589, 707
HpySE526I	ACGT	2 cut(s)	86, 526
KpnI	GGTACC	1 cut(s)	546
Kzo9I	GATC	5 cut(s)	94, 129, 346, 466, 620
LmnI	GCTCC	1 cut(s)	134
LweI	GCATC	1 cut(s)	665
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	2 cut(s)	86, 526
MaeIII	GTNAC	6 cut(s)	46, 149, 409, 431, 527, 629
MalI	GATC	5 cut(s)	96, 131, 348, 468, 622
MboI	GATC	5 cut(s)	94, 129, 346, 466, 620
MboII	GAAGA	9 cut(s)	22, 208, 252, 341, 349, 368, 377, 471, 474
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	3 cut(s)	346, 466, 620
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	188, 486
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	4 cut(s)	230, 327, 376, 697
MmeI	TCCRAC	2 cut(s)	404, 648
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	615
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	5 cut(s)	138, 393, 429, 464, 546
MspR9I	CCNGG	2 cut(s)	393, 429
MunI	CAATTG	1 cut(s)	486
MwoI	GCNNNNNNNGC	3 cut(s)	74, 589, 707
NciI	CCSGG	2 cut(s)	393, 429
NdeII	GATC	5 cut(s)	94, 129, 346, 466, 620
NlaIV	GGNNCC	3 cut(s)	136, 544, 622
NmuCI	GTSAC	4 cut(s)	46, 149, 409, 629
PfeI	GAWTC	1 cut(s)	114
PinAI	ACCGGT	1 cut(s)	545
PkrI	GCNGC	2 cut(s)	67, 160
PleI	GAGTC	4 cut(s)	230, 327, 376, 697
PpsI	GAGTC	4 cut(s)	230, 327, 376, 697
PspN4I	GGNNCC	3 cut(s)	136, 544, 622
PspPI	GGNCC	1 cut(s)	156
PsuI	RGATCY	3 cut(s)	346, 466, 620
RsaI	GTAC	3 cut(s)	324, 544, 666
RsaNI	GTAC	3 cut(s)	323, 543, 665
RseI	CAYNNNNRTG	1 cut(s)	615
SatI	GCNGC	2 cut(s)	66, 159
Sau3AI	GATC	5 cut(s)	94, 129, 346, 466, 620
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	4 cut(s)	230, 327, 376, 697
ScrFI	CCNGG	2 cut(s)	393, 429
SetI	ASST	6 cut(s)	11, 89, 328, 529, 565, 647
SfaNI	GCATC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	188, 486
SsiI	CCGC	6 cut(s)	63, 66, 159, 174, 207, 240
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	2 cut(s)	391, 427
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	3 cut(s)	46, 629, 664
TaiI	ACGT	2 cut(s)	89, 529
TaqI	TCGA	4 cut(s)	120, 180, 234, 441
TasI	AATT	2 cut(s)	188, 486
TatI	WGTACW	1 cut(s)	664
TauI	GCSGC	2 cut(s)	68, 161
TfiI	GAWTC	1 cut(s)	114
TscAI	CASTG	2 cut(s)	277, 634
TseFI	GTSAC	4 cut(s)	46, 149, 409, 629
Tsp45I	GTSAC	4 cut(s)	46, 149, 409, 629
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	3 cut(s)	137, 295, 563
TspRI	CASTG	2 cut(s)	277, 634
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.