FvH4_5g18240

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
10503614 .. 10504316
703 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g18240.t1

Sequence Viewer

Length: 612 bp
ATGAGAGGTATGTTCACCAAAATAGCAACGATAAGTGTTGATCAAAGTGAATACTTGGACTCACATTACACATATGGGGCTGGCTCCGCCTCACCCCCAACCTCCTCACCACAACCACCACCGCCATCACCTTCACCTTCACCTTCACCTTCACCTCCACCTCCATCACTGTTGCCACCTCCTCCACCGTCACCGCCTCCACCTTTTCTCTATCACCTCCACCTTTTCTCCATCACCGCCTCAACATCCCTTACCATCGCCGCCTGCACCTTTTCTCTATCACCTCCGCCGCCTCCTTCTCCGACAACACGAGAGACGGCGCAACAAATGAACAACATTGTCGACGCTCTGATCGGCTCAGGCGACTTCGGGAGCTGGGTCAACATCATCACGACGATGAATCCCCTCCCACTCAGCACCACCGTCTTCATGCCGGAAATCACCGCCGTGTCGCGCCTTCCCGTCGCAGACCCGTTCTTGTTGCCTTACCACGTGGTTCCTCAGCGCCTCACCTTCGTTGATCTCCGCCTCTTCAAGAATAACTCTCGCCTCTCGACTTTCCTTCTCGGCAAGTTCATCGTCGTGATGATCAAACAGTGCAAAAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

204

Amino Acids

21.93

Weight (kDa)

9.23

Isoelectric Point (pI)

85.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 342
AccII CGCG 1 cut(s) 454
AciI CCGC 9 cut(s) 87, 122, 194, 237, 261, 287, 290, 444, 526
AcvI CACGTG 1 cut(s) 493
AgsI TTSAA 1 cut(s) 535
AleI CACNNNNGTG 1 cut(s) 446
AluBI AGCT 1 cut(s) 375
AluI AGCT 1 cut(s) 375
Alw26I GTCTC 1 cut(s) 308
AspLEI GCGC 3 cut(s) 322, 456, 507
BauI CACGAG 1 cut(s) 309
BbrPI CACGTG 1 cut(s) 493
BbsI GAAGAC 1 cut(s) 418
BbvCI CCTCAGC 1 cut(s) 501
BccI CCATC 4 cut(s) 133, 172, 239, 263
BceAI ACGGC 2 cut(s) 333, 431
BcgI CGANNNNNNTGC 2 cut(s) 559, 593
BclI TGATCA 2 cut(s) 40, 588
BcoDI GTCTC 1 cut(s) 308
BfoI RGCGCY 1 cut(s) 508
BisI GCNGC 2 cut(s) 261, 290
BlsI GCNGC 2 cut(s) 262, 291
BmiI GGNNCC 2 cut(s) 85, 498
BpiI GAAGAC 1 cut(s) 418
Bpu10I CCTNAGC 2 cut(s) 358, 501
BsaAI YACGTR 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
BseGI GGATG 1 cut(s) 245
BseMII CTCAG 3 cut(s) 372, 427, 515
BseRI GAGGAG 2 cut(s) 94, 171
BseYI CCCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 454
BsiSI CCGG 1 cut(s) 434
BsmAI GTCTC 1 cut(s) 308
BsmBI CGTCTC 1 cut(s) 308
Bsp143I GATC 4 cut(s) 40, 351, 520, 588
BspACI CCGC 9 cut(s) 87, 122, 194, 237, 261, 287, 290, 444, 526
BspCNI CTCAG 3 cut(s) 371, 426, 514
BspFNI CGCG 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 85, 498
BssMI GATC 4 cut(s) 40, 351, 520, 588
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst4CI ACNGT 4 cut(s) 171, 189, 424, 597
Bst6I CTCTTC 1 cut(s) 536
BstBAI YACGTR 1 cut(s) 493
BstC8I GCNNGC 2 cut(s) 82, 265
BstDEI CTNAG 3 cut(s) 358, 413, 501
BstF5I GGATG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 454
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 3 cut(s) 322, 456, 507
BstKTI GATC 4 cut(s) 43, 354, 523, 591
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 4 cut(s) 40, 351, 520, 588
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstUI CGCG 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 418
BtgZI GCGATG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 245
BtsIMutI CAGTG 2 cut(s) 167, 602
Cac8I GCNNGC 2 cut(s) 82, 265
CfoI GCGC 3 cut(s) 322, 456, 507
CseI GACGC 1 cut(s) 353
CviAII CATG 1 cut(s) 430
CviJI RGCY 4 cut(s) 80, 84, 357, 375
CviKI_1 RGCY 4 cut(s) 80, 84, 357, 375
DdeI CTNAG 3 cut(s) 358, 413, 501
DpnI GATC 4 cut(s) 42, 353, 522, 590
DpnII GATC 4 cut(s) 40, 351, 520, 588
Eam1104I CTCTTC 1 cut(s) 536
EarI CTCTTC 1 cut(s) 536
EciI GGCGGA 3 cut(s) 76, 276, 515
Eco72I CACGTG 1 cut(s) 493
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 1 cut(s) 433
FaiI YATR 4 cut(s) 11, 73, 75, 431
FatI CATG 1 cut(s) 429
FauNDI CATATG 1 cut(s) 73
FbaI TGATCA 2 cut(s) 40, 588
FblI GTMKAC 1 cut(s) 342
Fnu4HI GCNGC 2 cut(s) 261, 290
FokI GGATG 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 261, 290
GlaI GCGC 3 cut(s) 321, 455, 506
GluI GCNGC 2 cut(s) 261, 290
GsaI CCCAGC 1 cut(s) 379
HaeII RGCGCY 1 cut(s) 508
HapII CCGG 1 cut(s) 434
HgaI GACGC 1 cut(s) 353
HhaI GCGC 3 cut(s) 322, 456, 507
Hin1II CATG 1 cut(s) 433
Hin6I GCGC 3 cut(s) 320, 454, 505
HinP1I GCGC 3 cut(s) 320, 454, 505
HincII GTYRAC 2 cut(s) 343, 382
HindII GTYRAC 2 cut(s) 343, 382
HinfI GANTC 2 cut(s) 59, 400
HpaII CCGG 1 cut(s) 434
Hpy166II GTNNAC 3 cut(s) 15, 343, 382
Hpy188I TCNGA 2 cut(s) 303, 351
Hpy188III TCNNGA 5 cut(s) 370, 391, 535, 553, 583
Hpy8I GTNNAC 3 cut(s) 15, 343, 382
Hpy99I CGWCG 4 cut(s) 347, 397, 467, 584
HpyAV CCTTC 8 cut(s) 141, 147, 153, 159, 306, 467, 523, 572
HpyCH4III ACNGT 4 cut(s) 171, 189, 424, 597
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 2 cut(s) 267, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 3 cut(s) 358, 413, 501
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 1 cut(s) 433
HspAI GCGC 3 cut(s) 320, 454, 505
Ksp22I TGATCA 2 cut(s) 40, 588
Kzo9I GATC 4 cut(s) 40, 351, 520, 588
LmnI GCTCC 2 cut(s) 89, 372
LpnPI CCDG 5 cut(s) 66, 277, 345, 361, 447
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 189
MalI GATC 4 cut(s) 42, 353, 522, 590
MboI GATC 4 cut(s) 40, 351, 520, 588
MboII GAAGA 2 cut(s) 418, 523
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 326
MslI CAYNNNNRTG 3 cut(s) 395, 446, 581
MspI CCGG 1 cut(s) 434
MvnI CGCG 1 cut(s) 454
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeI CATATG 1 cut(s) 73
NdeII GATC 4 cut(s) 40, 351, 520, 588
NlaIII CATG 1 cut(s) 433
NlaIV GGNNCC 2 cut(s) 85, 498
NmeAIII GCCGAG 1 cut(s) 546
NmuCI GTSAC 1 cut(s) 189
OliI CACNNNNGTG 1 cut(s) 446
PcsI WCGNNNNNNNCGW 1 cut(s) 360
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 2 cut(s) 262, 291
PleI GAGTC 1 cut(s) 53
PmaCI CACGTG 1 cut(s) 493
PmlI CACGTG 1 cut(s) 493
PpsI GAGTC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 493
PspCI CACGTG 1 cut(s) 493
PspFI CCCAGC 1 cut(s) 375
PspN4I GGNNCC 2 cut(s) 85, 498
RseI CAYNNNNRTG 3 cut(s) 395, 446, 581
SalI GTCGAC 1 cut(s) 341
SatI GCNGC 2 cut(s) 261, 290
Sau3AI GATC 4 cut(s) 40, 351, 520, 588
SchI GAGTC 1 cut(s) 53
SmiMI CAYNNNNRTG 3 cut(s) 395, 446, 581
SsiI CCGC 9 cut(s) 87, 122, 194, 237, 261, 287, 290, 444, 526
TaaI ACNGT 4 cut(s) 171, 189, 424, 597
TaiI ACGT 1 cut(s) 495
TaqI TCGA 2 cut(s) 342, 554
TauI GCSGC 2 cut(s) 263, 292
TfiI GAWTC 1 cut(s) 400
TscAI CASTG 2 cut(s) 174, 602
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 4 cut(s) 344, 413, 418, 565
TspRI CASTG 2 cut(s) 174, 602
XmiI GTMKAC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.