Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005034

Physical Location & Seq

Genomic Coordinates Forward (+)

5594840 .. 5599839

Gene Structure 5000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGCCGACGGAGGTCAGGAAAACGAGGATGCAGGAGGTTAGGTTGCCCATTGCTGAAGTGGACGAGGATGAAGAAGAAAAGGACCATGAGGAAGAAAAGGAAATGGGCTCGATGGGCGCGGCGTTCGTCGCTTACAGTGTTTTCTTCGCTGAGCTCAACGAGCTTCTAATGAGGGAGCTCGCCAAGGAACGCTACTTCGGCATTGAGGTTAGGGTTACGCCGATGCGCACTGAGATCATAATCAGGGCTACTCGGACTCAAAACGTGCTCGGAGAGAAGGGAAGGAGGATTAGGGAGTTGACCTTAGTTGTGCAGAAGAGTTCGCAACGATATTCTCGGGGTCACAAGAATCTAACGGATTCGCTTTCGCCTTCGTTATATAACTACTCTCTTCCTCTCTCATTTCTCACACACCATTTTTTCTCAGTCACTGAAAAAACCAACAAACTCTCTGATCCTCTCATGGCGACTTACCACAATTCCTCCGTTTCTTTGTTCACTCTCTTCCTCGCCACCACTCTTATCGCAACCGCCGCCACCTCCGCTTCACCCCTCACCGCCTCACCACCACCACTGCCTCCATTCCAGTCGTCTCCTCCGGCCAAGAGGCTTGAGGACGTCGTCGCCGATCCACCTCTCGGCTCCGGTGACTTCACAAGCTGGATTCTAAAGTTCGCGCCCGCATCTCTCCCTGAAAACGACGCCGTGTCAAGCGTGGAGGCCTCAGCGCCGGCGTCACCTCAGCCGTCGCCGCAGGACGAGCTCACGGAGGCAGCGATCGACTCCGGGACGCTTGCACACGTCATCACCTCCGGCAATTATCTCTCTCGCGCGACCGTCCCGCTCTCAAGAAACAACGCCGTGTCACGCCTCCTGGCCTCAGCGCCGCCTTCTCCTCCATCGTCACTTCCGCCATCTCCTCTGGCCACTACAGCGTCGCCGGAGAATGTCCAGCAAGTCACGGAGGCAGCGATCGACTCCGGGAGCCTCGAACACGTCATCGCTGCCGGGACTCAGCTCTCTCCTCTACAGAGCATGACCGTCTTCCAGTCCAGAAACGACGACGTACCGGCCACAGACGAATTCTTCCCACCGGACCACGTGGTGCCTCAGCGGCTCACGTTCGCCGACCTGATTCTCTTCGAGACCGGTACTCGTCTTCCGACGCTCCTTCCCGGAAGATTTGTGACCATAACTAACAACACCGCCGAGAATTACACAGTGAACAACCGTCGCATAGTCCAGCCCGACGTCTATGTCACAGACAGTGTAGTCGTGCATCTGCTGGCTAAATACTCCAACGGCGGCGATACTAGTTCCGGCAGCGACCTCCTCGCGTTCTCCACCCTCTTGTTCTCTCTCGGGGTTTTTACTATTTTAGTGATCCTCGTCTTGATCTACAACTGGTGTCCTTACATATTTGGAGGTGTGGCCTTGGGCGGAGTGGTCGGTGCGGTGGGAAGGATTGTGGCAGGTGGAGGAGGCCCCGTCGAAGGCAACCGAGGATTCCTCAGCCGAATTGCTGGTGGCGTTGGGGGGGTTCCGGGGACCGTGTTTAGCATAGGGAGGGCGGCGCAGCCACGTAACCCTGAAATAGATTCACTTCTTGACCGTGATCAACCACAGGTAAATCAGGATGTGGAATCGACAGAAGCAGCGGGTGCCAATGACGACGGTGACGAAGTTGTGGTGGATGAGAACCAGCAGCAGCAGCTTCCGGCCGACCAGGCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000702 GO:0002181 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003735 GO:0003824 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006139 GO:0006259 GO:0006281 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0008150 GO:0008152 GO:0008534 GO:0009058 GO:0009059 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0016787 GO:0016798 GO:0016799 GO:0019104 GO:0019538 GO:0022626 GO:0022627 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0055044 GO:0070013 GO:0071704 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

KH_2 Ribosomal_S3_C

Protein Analysis

579

Amino Acids

62.15

Weight (kDa)

4.78

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_2	PF07650	51 - 107	2.5e-08	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30800 AT4G12950 AT4G29980
fragaria_vesca	FvH4_1g24910 FvH4_3g11440 FvH4_3g19970 FvH4_5g18240 FvH4_5g21920 FvH4_6g29350
malus_domestica	MD00G1097400.v1.1
prunus_persica	Prupe.4G102300_v2.0.a1
pyrus_communis	pycom05g24700
rosa_laevigata	RLG00000031490 RLG00000032358
rosa_multiflora	Rmu_sc0017459.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059350
rosa_rugosa	Rorug04G0431000 Rorug04G0432100 Rorug05G0042200
rosa_samantha	Rh4BG224100 Rh4CG235000 Rh4DG220900 Rh5BG055700 Rh5CG067100 Rh5CG067200 Rh5CG078900 Rh5DG054700 Rh5DG066900
rosa_wichuraiana	Rw4G019090 Rw5G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1463
AasI	GACNNNNNNGTC	2 cut(s)	1256, 1271
AatII	GACGTC	2 cut(s)	621, 1254
Acc16I	TGCGCA	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	1463
AccB1I	GGYRCC	2 cut(s)	1105, 1661
AccBSI	CCGCTC	1 cut(s)	844
AccII	CGCG	5 cut(s)	119, 677, 831, 833, 1337
AclWI	GGATC	3 cut(s)	449, 623, 1378
AcoI	YGGCCR	4 cut(s)	600, 924, 1071, 1719
AcsI	RAATTY	1 cut(s)	1082
AcuI	CTGAAG	1 cut(s)	75
AcvI	CACGTG	1 cut(s)	1102
AcyI	GRCGYC	4 cut(s)	618, 702, 734, 1251
AdeI	CACNNNGTG	1 cut(s)	1105
AfaI	GTAC	2 cut(s)	1068, 1153
AfiI	CCNNNNNNNGG	2 cut(s)	638, 1493
AflIII	ACRYGT	2 cut(s)	799, 994
AgeI	ACCGGT	1 cut(s)	1148
AhdI	GACNNNNNGTC	1 cut(s)	706
AhlI	ACTAGT	1 cut(s)	1313
AjiI	CACGTC	2 cut(s)	802, 997
AjnI	CCWGG	2 cut(s)	873, 1725
AluBI	AGCT	7 cut(s)	154, 163, 178, 660, 763, 1018, 1714
AluI	AGCT	7 cut(s)	154, 163, 178, 660, 763, 1018, 1714
Alw21I	GWGCWC	4 cut(s)	156, 180, 270, 765
Alw26I	GTCTC	2 cut(s)	597, 1139
AlwI	GGATC	3 cut(s)	449, 623, 1378
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	2 cut(s)	336, 1361
AoxI	GGCC	9 cut(s)	600, 720, 876, 924, 1071, 1431, 1483, 1719, 1728
ApeKI	GCWGC	9 cut(s)	773, 968, 1004, 1323, 1576, 1655, 1705, 1708, 1711
ApoI	RAATTY	1 cut(s)	1082
AsiGI	ACCGGT	1 cut(s)	1148
AspLEI	GCGC	7 cut(s)	119, 228, 679, 730, 833, 886, 1576
AspS9I	GGNCC	5 cut(s)	82, 1096, 1484, 1548, 1729
AsuC2I	CCSGG	5 cut(s)	787, 982, 1009, 1176, 1545
AsuHPI	GGTGA	7 cut(s)	540, 547, 555, 659, 729, 799, 1688
AvaI	CYCGRG	2 cut(s)	336, 1361
AvaII	GGWCC	3 cut(s)	82, 1096, 1548
BalI	TGGCCA	1 cut(s)	926
BanI	GGYRCC	2 cut(s)	1105, 1661
BanII	GRGCYC	4 cut(s)	110, 156, 180, 765
BbrPI	CACGTG	1 cut(s)	1102
BbsI	GAAGAC	2 cut(s)	1036, 1151
Bbv12I	GWGCWC	4 cut(s)	156, 180, 270, 765
BbvCI	CCTCAGC	5 cut(s)	724, 741, 880, 1110, 1511
BbvI	GCAGC	9 cut(s)	785, 980, 991, 1335, 1588, 1667, 1717, 1720, 1723
BccI	CCATC	3 cut(s)	106, 907, 922
BceAI	ACGGC	4 cut(s)	689, 730, 845, 1318
BciT130I	CCWGG	2 cut(s)	875, 1727
BclI	TGATCA	1 cut(s)	1615
BcnI	CCSGG	5 cut(s)	787, 982, 1009, 1176, 1545
BcoDI	GTCTC	2 cut(s)	597, 1139
BcuI	ACTAGT	1 cut(s)	1313
BfaI	CTAG	1 cut(s)	1314
BfmI	CTRYAG	2 cut(s)	930, 1028
BfoI	RGCGCY	2 cut(s)	731, 887
BfuAI	ACCTGC	1 cut(s)	1463
BglI	GCCNNNNNGGC	2 cut(s)	1114, 1727
BlpI	GCTNAGC	1 cut(s)	150
Bme1390I	CCNGG	7 cut(s)	787, 875, 982, 1009, 1176, 1545, 1727
Bme18I	GGWCC	3 cut(s)	82, 1096, 1548
BmeRI	GACNNNNNGTC	1 cut(s)	706
BmeT110I	CYCGRG	2 cut(s)	336, 1361
BmgBI	CACGTC	2 cut(s)	802, 997
BmgT120I	GGNCC	5 cut(s)	82, 1096, 1484, 1548, 1729
BmiI	GGNNCC	7 cut(s)	643, 986, 1107, 1486, 1542, 1549, 1663
BmrFI	CCNGG	7 cut(s)	787, 875, 982, 1009, 1176, 1545, 1727
BmrI	ACTGGG	1 cut(s)	1726
BmsI	GCATC	4 cut(s)	18, 213, 692, 1288
BmuI	ACTGGG	1 cut(s)	1726
BoxI	GACNNNNGTC	1 cut(s)	11
BpiI	GAAGAC	2 cut(s)	1036, 1151
BplI	GAGNNNNNCTC	2 cut(s)	1494, 1526
Bpu10I	CCTNAGC	5 cut(s)	724, 741, 880, 1110, 1511
Bpu1102I	GCTNAGC	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	632, 832
BpuMI	CCSGG	5 cut(s)	787, 982, 1009, 1176, 1545
BsaAI	YACGTR	2 cut(s)	1102, 1583
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	4 cut(s)	618, 702, 734, 1251
BsaI	GGTCTC	1 cut(s)	1139
BsaJI	CCNNGG	4 cut(s)	183, 1434, 1501, 1544
BsaWI	WCCGGW	3 cut(s)	644, 1093, 1148
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 467, 497, 1473, 1503
Bsc4I	CCNNNNNNNGG	2 cut(s)	638, 1493
Bse118I	RCCGGY	3 cut(s)	730, 1069, 1148
Bse1I	ACTGG	4 cut(s)	586, 1048, 1409, 1732
Bse3DI	GCAATG	1 cut(s)	48
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	875, 1727
BseDI	CCNNGG	4 cut(s)	183, 1434, 1501, 1544
BseGI	GGATG	4 cut(s)	33, 73, 1642, 1699
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	638, 1493
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	9 cut(s)	141, 222, 438, 738, 755, 894, 1028, 1124, 1525
BseNI	ACTGG	4 cut(s)	586, 1048, 1409, 1732
BseRI	GAGGAG	6 cut(s)	585, 885, 909, 1014, 1322, 1494
BseX3I	CGGCCG	1 cut(s)	1719
BseXI	GCAGC	9 cut(s)	785, 980, 991, 1335, 1588, 1667, 1717, 1720, 1723
BsgI	GTGCAG	1 cut(s)	332
Bsh1236I	CGCG	5 cut(s)	119, 677, 831, 833, 1337
Bsh1285I	CGRYCG	4 cut(s)	780, 837, 975, 1722
BshFI	GGCC	9 cut(s)	602, 722, 878, 926, 1073, 1433, 1485, 1721, 1730
BshNI	GGYRCC	2 cut(s)	1105, 1661
BshTI	ACCGGT	1 cut(s)	1148
BsiEI	CGRYCG	4 cut(s)	780, 837, 975, 1722
BsiHKAI	GWGCWC	4 cut(s)	156, 180, 270, 765
BsiHKCI	CYCGRG	2 cut(s)	336, 1361
BslFI	GGGAC	4 cut(s)	802, 824, 1024, 1561
BslI	CCNNNNNNNGG	2 cut(s)	638, 1493
BsmAI	GTCTC	2 cut(s)	597, 1139
BsmBI	CGTCTC	1 cut(s)	597
BsmFI	GGGAC	4 cut(s)	802, 824, 1024, 1561
BsnI	GGCC	9 cut(s)	602, 722, 878, 926, 1073, 1433, 1485, 1721, 1730
Bso31I	GGTCTC	1 cut(s)	1139
BsoBI	CYCGRG	2 cut(s)	336, 1361
Bsp1286I	GDGCHC	5 cut(s)	110, 156, 180, 270, 765
Bsp143I	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
Bsp1720I	GCTNAGC	1 cut(s)	150
BspANI	GGCC	9 cut(s)	602, 722, 878, 926, 1073, 1433, 1485, 1721, 1730
BspCNI	CTCAG	9 cut(s)	142, 223, 437, 737, 754, 893, 1027, 1123, 1524
BspFNI	CGCG	5 cut(s)	119, 677, 831, 833, 1337
BspLI	GGNNCC	7 cut(s)	643, 986, 1107, 1486, 1542, 1549, 1663
BspMI	ACCTGC	1 cut(s)	1463
BspPI	GGATC	3 cut(s)	449, 623, 1378
BspT107I	GGYRCC	2 cut(s)	1105, 1661
BspTNI	GGTCTC	1 cut(s)	1139
BsrBI	CCGCTC	1 cut(s)	844
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	3 cut(s)	730, 1069, 1148
BsrI	ACTGG	4 cut(s)	586, 1048, 1409, 1732
BssAI	RCCGGY	3 cut(s)	730, 1069, 1148
BssECI	CCNNGG	4 cut(s)	183, 1434, 1501, 1544
BssMI	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
BssNI	GRCGYC	4 cut(s)	618, 702, 734, 1251
BssT1I	CCWWGG	2 cut(s)	183, 1434
Bst2UI	CCWGG	2 cut(s)	875, 1727
Bst4CI	ACNGT	9 cut(s)	137, 838, 1042, 1222, 1232, 1268, 1552, 1613, 1676
Bst6I	CTCTTC	4 cut(s)	311, 396, 509, 1145
BstACI	GRCGYC	4 cut(s)	618, 702, 734, 1251
BstAPI	GCANNNNNTGC	1 cut(s)	1661
BstBAI	YACGTR	2 cut(s)	1102, 1583
BstC8I	GCNNGC	5 cut(s)	180, 681, 732, 795, 1287
BstF5I	GGATG	4 cut(s)	33, 73, 1642, 1699
BstFNI	CGCG	5 cut(s)	119, 677, 831, 833, 1337
BstH2I	RGCGCY	2 cut(s)	731, 887
BstHHI	GCGC	7 cut(s)	119, 228, 679, 730, 833, 886, 1576
BstKTI	GATC	8 cut(s)	237, 457, 631, 780, 975, 1386, 1398, 1618
BstMAI	GTCTC	2 cut(s)	597, 1139
BstMBI	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
BstMCI	CGRYCG	4 cut(s)	780, 837, 975, 1722
BstNI	CCWGG	2 cut(s)	875, 1727
BstPAI	GACNNNNGTC	1 cut(s)	11
BstSCI	CCNGG	7 cut(s)	785, 873, 980, 1007, 1174, 1543, 1725
BstSFI	CTRYAG	2 cut(s)	930, 1028
BstUI	CGCG	5 cut(s)	119, 677, 831, 833, 1337
BstV1I	GCAGC	9 cut(s)	785, 980, 991, 1335, 1588, 1667, 1717, 1720, 1723
BstV2I	GAAGAC	2 cut(s)	1036, 1151
BstZI	CGGCCG	1 cut(s)	1719
BsuRI	GGCC	9 cut(s)	602, 722, 878, 926, 1073, 1433, 1485, 1721, 1730
BtgZI	GCGATG	1 cut(s)	985
BtrI	CACGTC	2 cut(s)	802, 997
BtsCI	GGATG	4 cut(s)	33, 73, 1642, 1699
BtsI	GCAGTG	1 cut(s)	572
BtsIMutI	CAGTG	6 cut(s)	142, 228, 429, 572, 1227, 1273
BveI	ACCTGC	1 cut(s)	1463
Cac8I	GCNNGC	5 cut(s)	180, 681, 732, 795, 1287
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	7 cut(s)	119, 228, 679, 730, 833, 886, 1576
Cfr10I	RCCGGY	3 cut(s)	730, 1069, 1148
Cfr13I	GGNCC	5 cut(s)	82, 1096, 1484, 1548, 1729
CseI	GACGC	5 cut(s)	710, 723, 799, 924, 1174
Csp6I	GTAC	2 cut(s)	1067, 1152
CspAI	ACCGGT	1 cut(s)	1148
CviAII	CATG	3 cut(s)	86, 463, 1036
CviQI	GTAC	2 cut(s)	1067, 1152
DpnI	GATC	8 cut(s)	236, 456, 630, 779, 974, 1385, 1397, 1617
DpnII	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
DraIII	CACNNNGTG	1 cut(s)	1105
DrdI	GACNNNNNNGTC	2 cut(s)	1256, 1271
DriI	GACNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	2 cut(s)	1256, 1271
EaeI	YGGCCR	4 cut(s)	600, 924, 1071, 1719
EagI	CGGCCG	1 cut(s)	1719
Eam1104I	CTCTTC	4 cut(s)	311, 396, 509, 1145
Eam1105I	GACNNNNNGTC	1 cut(s)	706
EarI	CTCTTC	4 cut(s)	311, 396, 509, 1145
EciI	GGCGGA	2 cut(s)	900, 1455
Ecl136II	GAGCTC	3 cut(s)	154, 178, 763
EclXI	CGGCCG	1 cut(s)	1719
Eco130I	CCWWGG	2 cut(s)	183, 1434
Eco147I	AGGCCT	1 cut(s)	722
Eco24I	GRGCYC	4 cut(s)	110, 156, 180, 765
Eco31I	GGTCTC	1 cut(s)	1139
Eco47I	GGWCC	3 cut(s)	82, 1096, 1548
Eco52I	CGGCCG	1 cut(s)	1719
Eco53kI	GAGCTC	3 cut(s)	154, 178, 763
Eco57I	CTGAAG	1 cut(s)	75
Eco72I	CACGTG	1 cut(s)	1102
Eco88I	CYCGRG	2 cut(s)	336, 1361
EcoICRI	GAGCTC	3 cut(s)	154, 178, 763
EcoO109I	RGGNCCY	1 cut(s)	1484
EcoRI	GAATTC	1 cut(s)	1082
EcoRII	CCWGG	2 cut(s)	873, 1725
EcoT14I	CCWWGG	2 cut(s)	183, 1434
EcoT38I	GRGCYC	4 cut(s)	110, 156, 180, 765
ErhI	CCWWGG	2 cut(s)	183, 1434
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	3 cut(s)	89, 466, 1039
FaqI	GGGAC	4 cut(s)	802, 824, 1024, 1561
FatI	CATG	3 cut(s)	85, 462, 1035
FauI	CCCGC	3 cut(s)	688, 849, 1651
FbaI	TGATCA	1 cut(s)	1615
FokI	GGATG	4 cut(s)	40, 80, 1649, 1706
FriOI	GRGCYC	4 cut(s)	110, 156, 180, 765
FspAI	RTGCGCAY	1 cut(s)	227
FspBI	CTAG	1 cut(s)	1314
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	7 cut(s)	118, 227, 678, 729, 832, 885, 1575
HaeII	RGCGCY	2 cut(s)	731, 887
HaeIII	GGCC	9 cut(s)	602, 722, 878, 926, 1073, 1433, 1485, 1721, 1730
HgaI	GACGC	5 cut(s)	710, 723, 799, 924, 1174
HhaI	GCGC	7 cut(s)	119, 228, 679, 730, 833, 886, 1576
Hin1I	GRCGYC	4 cut(s)	618, 702, 734, 1251
Hin1II	CATG	3 cut(s)	89, 466, 1039
Hin6I	GCGC	7 cut(s)	117, 226, 677, 728, 831, 884, 1574
HinP1I	GCGC	7 cut(s)	117, 226, 677, 728, 831, 884, 1574
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HphI	GGTGA	7 cut(s)	540, 547, 555, 659, 729, 799, 1688
Hpy166II	GTNNAC	4 cut(s)	61, 300, 498, 1225
Hpy188I	TCNGA	4 cut(s)	255, 272, 454, 1164
Hpy188III	TCNNGA	7 cut(s)	16, 849, 1053, 1144, 1393, 1607, 1634
Hpy8I	GTNNAC	4 cut(s)	61, 300, 498, 1225
HpyAV	CCTTC	7 cut(s)	271, 276, 381, 900, 1181, 1455, 1487
HpyCH4III	ACNGT	9 cut(s)	137, 838, 1042, 1222, 1232, 1268, 1552, 1613, 1676
HpyCH4IV	ACGT	9 cut(s)	264, 618, 801, 996, 1065, 1101, 1121, 1251, 1582
HpyCH4V	TGCA	4 cut(s)	31, 313, 797, 1279
HpySE526I	ACGT	9 cut(s)	264, 618, 801, 996, 1065, 1101, 1121, 1251, 1582
Hsp92I	GRCGYC	4 cut(s)	618, 702, 734, 1251
Hsp92II	CATG	3 cut(s)	89, 466, 1039
HspAI	GCGC	7 cut(s)	117, 226, 677, 728, 831, 884, 1574
KroI	GCCGGC	1 cut(s)	730
KroNI	GCCGGC	1 cut(s)	732
Ksp22I	TGATCA	1 cut(s)	1615
Kzo9I	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
LmnI	GCTCC	4 cut(s)	175, 647, 984, 1173
Lsp1109I	GCAGC	9 cut(s)	785, 980, 991, 1335, 1588, 1667, 1717, 1720, 1723
LweI	GCATC	4 cut(s)	18, 213, 692, 1288
MaeI	CTAG	1 cut(s)	1314
MaeII	ACGT	9 cut(s)	264, 618, 801, 996, 1065, 1101, 1121, 1251, 1582
MalI	GATC	8 cut(s)	236, 456, 630, 779, 974, 1385, 1397, 1617
MbiI	CCGCTC	1 cut(s)	844
MboI	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
MhlI	GDGCHC	5 cut(s)	110, 156, 180, 270, 765
MlsI	TGGCCA	1 cut(s)	926
MluCI	AATT	5 cut(s)	478, 817, 1082, 1213, 1518
MluNI	TGGCCA	1 cut(s)	926
MlyI	GAGTC	4 cut(s)	250, 776, 971, 1006
MmeI	TCCRAC	2 cut(s)	1187, 1323
Mox20I	TGGCCA	1 cut(s)	926
MreI	CGCCGGCG	1 cut(s)	730
MroNI	GCCGGC	1 cut(s)	730
MscI	TGGCCA	1 cut(s)	926
Msp20I	TGGCCA	1 cut(s)	926
MspA1I	CMGCKG	2 cut(s)	1114, 1658
MspR9I	CCNGG	7 cut(s)	787, 875, 982, 1009, 1176, 1545, 1727
MvaI	CCWGG	2 cut(s)	875, 1727
MvnI	CGCG	5 cut(s)	119, 677, 831, 833, 1337
NaeI	GCCGGC	1 cut(s)	732
NciI	CCSGG	5 cut(s)	787, 982, 1009, 1176, 1545
NdeII	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
NgoMIV	GCCGGC	1 cut(s)	730
NlaIII	CATG	3 cut(s)	89, 466, 1039
NlaIV	GGNNCC	7 cut(s)	643, 986, 1107, 1486, 1542, 1549, 1663
NmeAIII	GCCGAG	2 cut(s)	618, 1234
NsbI	TGCGCA	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	1463
PceI	AGGCCT	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	4 cut(s)	624, 773, 968, 1677
PdiI	GCCGGC	1 cut(s)	732
PfeI	GAWTC	7 cut(s)	349, 359, 664, 1135, 1506, 1598, 1643
PflFI	GACNNNGTC	1 cut(s)	620
PfoI	TCCNGGA	3 cut(s)	785, 980, 1174
PinAI	ACCGGT	1 cut(s)	1148
Ple19I	CGATCG	2 cut(s)	780, 975
PleI	GAGTC	4 cut(s)	250, 776, 971, 1006
PmaCI	CACGTG	1 cut(s)	1102
PmlI	CACGTG	1 cut(s)	1102
PpsI	GAGTC	4 cut(s)	250, 776, 971, 1006
Ppu21I	YACGTR	2 cut(s)	1102, 1583
PshAI	GACNNNNGTC	1 cut(s)	11
Psp124BI	GAGCTC	3 cut(s)	156, 180, 765
Psp6I	CCWGG	2 cut(s)	873, 1725
PspCI	CACGTG	1 cut(s)	1102
PspGI	CCWGG	2 cut(s)	873, 1725
PspN4I	GGNNCC	7 cut(s)	643, 986, 1107, 1486, 1542, 1549, 1663
PspPI	GGNCC	5 cut(s)	82, 1096, 1484, 1548, 1729
PstNI	CAGNNNCTG	1 cut(s)	431
PsyI	GACNNNGTC	1 cut(s)	620
PvuI	CGATCG	2 cut(s)	780, 975
RsaI	GTAC	2 cut(s)	1068, 1153
RsaNI	GTAC	2 cut(s)	1067, 1152
SacI	GAGCTC	3 cut(s)	156, 180, 765
Sau3AI	GATC	8 cut(s)	234, 454, 628, 777, 972, 1383, 1395, 1615
Sau96I	GGNCC	5 cut(s)	82, 1096, 1484, 1548, 1729
SchI	GAGTC	4 cut(s)	250, 776, 971, 1006
ScrFI	CCNGG	7 cut(s)	787, 875, 982, 1009, 1176, 1545, 1727
SduI	GDGCHC	5 cut(s)	110, 156, 180, 270, 765
SfaNI	GCATC	4 cut(s)	18, 213, 692, 1288
SfcI	CTRYAG	2 cut(s)	930, 1028
SfiI	GGCCNNNNNGGCC	1 cut(s)	1727
SgrAI	CRCCGGYG	1 cut(s)	730
SinI	GGWCC	3 cut(s)	82, 1096, 1548
SmlI	CTYRAG	2 cut(s)	611, 847
SmoI	CTYRAG	2 cut(s)	611, 847
SpeI	ACTAGT	1 cut(s)	1313
Sse9I	AATT	5 cut(s)	478, 817, 1082, 1213, 1518
SseBI	AGGCCT	1 cut(s)	722
SspMI	CTAG	1 cut(s)	1314
SstI	GAGCTC	3 cut(s)	156, 180, 765
StuI	AGGCCT	1 cut(s)	722
StyD4I	CCNGG	7 cut(s)	785, 873, 980, 1007, 1174, 1543, 1725
StyI	CCWWGG	2 cut(s)	183, 1434
TaaI	ACNGT	9 cut(s)	137, 838, 1042, 1222, 1232, 1268, 1552, 1613, 1676
TaiI	ACGT	9 cut(s)	267, 621, 804, 999, 1068, 1104, 1124, 1254, 1585
TaqI	TCGA	7 cut(s)	110, 780, 975, 990, 1143, 1491, 1646
TasI	AATT	5 cut(s)	478, 817, 1082, 1213, 1518
TauI	GCSGC	7 cut(s)	122, 536, 754, 889, 1117, 1308, 1574
TfiI	GAWTC	7 cut(s)	349, 359, 664, 1135, 1506, 1598, 1643
TscAI	CASTG	6 cut(s)	142, 235, 436, 579, 1227, 1273
TseI	GCWGC	9 cut(s)	773, 968, 1004, 1323, 1576, 1655, 1705, 1708, 1711
TspDTI	ATGAA	1 cut(s)	84
TspGWI	ACGGA	5 cut(s)	23, 371, 475, 782, 977
TspRI	CASTG	6 cut(s)	142, 235, 436, 579, 1227, 1273
Tth111I	GACNNNGTC	1 cut(s)	620
VpaK11BI	GGWCC	3 cut(s)	82, 1096, 1548
XapI	RAATTY	1 cut(s)	1082
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	1314
ZraI	GACGTC	2 cut(s)	619, 1252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.