Rorug05G0042200

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
3666506 .. 3667345
840 bp
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UTR
Exon/CDS
Intron
Rorug05G0042200.1

Sequence Viewer

Length: 372 bp
ATGTTTTCATCTGGTTGGCGGATGGGACAATCAGTAAAAATTAACACCGCTTATCTCAGTGAGCTGATTTTGAAAGAGTGGAAGAAAAAGAAGCATGCACATTGGCGCTACAGAAACGCACGTACAGAGTTGATGACACACGATATTGGTCACATTAAACGAACTTGGAGAAAGGTTTTGCGCATTTGGAGGCAAAAGCATCGTGAACAAAACAGCTTTTTGGCTAAGTTCTACATCAAGCGTTTTGAGGATTTGAAACATGATATTGAGAACTCTTCCAATAATTGGACCAAGGGTGTTGCAGTAAGGGAAGTATCTAACTTCATGTATGGGCAACGATTGTTGACAAATGGATGGCTGAGATGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

15.12

Weight (kDa)

10.73

Isoelectric Point (pI)

37.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 285
AciI CCGC 2 cut(s) 19, 48
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 2 cut(s) 73, 256
AluBI AGCT 2 cut(s) 64, 216
AluI AGCT 2 cut(s) 64, 216
AspLEI GCGC 2 cut(s) 108, 183
AspS9I GGNCC 1 cut(s) 288
AvaII GGWCC 1 cut(s) 288
BccI CCATC 3 cut(s) 16, 348, 357
BcgI CGANNNNNNTGC 2 cut(s) 182, 216
BfmI CTRYAG 1 cut(s) 109
BfoI RGCGCY 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmsI GCATC 1 cut(s) 208
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 2 cut(s) 27, 359
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 2 cut(s) 70, 350
BslFI GGGAC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 285
BsmFI GGGAC 1 cut(s) 39
BspACI CCGC 2 cut(s) 19, 48
BspCNI CTCAG 2 cut(s) 69, 351
BssECI CCNNGG 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 3 cut(s) 56, 225, 359
BstF5I GGATG 2 cut(s) 27, 359
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 2 cut(s) 108, 183
BstNSI RCATGY 1 cut(s) 98
BstSFI CTRYAG 1 cut(s) 109
BtsCI GGATG 2 cut(s) 27, 359
BtsIMutI CAGTG 1 cut(s) 64
Cac8I GCNNGC 1 cut(s) 96
CfoI GCGC 2 cut(s) 108, 183
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 1 cut(s) 123
CviAII CATG 3 cut(s) 95, 260, 325
CviJI RGCY 4 cut(s) 64, 216, 224, 358
CviKI_1 RGCY 4 cut(s) 64, 216, 224, 358
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 3 cut(s) 56, 225, 359
Eam1104I CTCTTC 1 cut(s) 280
EarI CTCTTC 1 cut(s) 280
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 3 cut(s) 98, 263, 328
FaiI YATR 4 cut(s) 96, 261, 326, 330
FaqI GGGAC 1 cut(s) 39
FatI CATG 3 cut(s) 94, 259, 324
FokI GGATG 2 cut(s) 34, 366
FspI TGCGCA 1 cut(s) 182
GlaI GCGC 2 cut(s) 107, 182
HaeII RGCGCY 1 cut(s) 109
HhaI GCGC 2 cut(s) 108, 183
Hin1II CATG 3 cut(s) 98, 263, 328
Hin6I GCGC 2 cut(s) 106, 181
HinP1I GCGC 2 cut(s) 106, 181
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
Hpy166II GTNNAC 2 cut(s) 206, 345
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 206, 345
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 2 cut(s) 98, 302
HpyF3I CTNAG 3 cut(s) 56, 225, 359
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 98, 263, 328
HspAI GCGC 2 cut(s) 106, 181
LweI GCATC 1 cut(s) 208
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 149
MboII GAAGA 2 cut(s) 94, 267
MluCI AATT 2 cut(s) 39, 283
MnlI CCTC 2 cut(s) 183, 241
MseI TTAA 2 cut(s) 42, 156
NlaIII CATG 3 cut(s) 98, 263, 328
NmuCI GTSAC 1 cut(s) 149
NsbI TGCGCA 1 cut(s) 182
NspI RCATGY 1 cut(s) 98
PaeI GCATGC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 285
Ppu21I YACGTR 1 cut(s) 122
PspPI GGNCC 1 cut(s) 288
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SaqAI TTAA 2 cut(s) 42, 156
Sau96I GGNCC 1 cut(s) 288
SetI ASST 4 cut(s) 66, 124, 177, 218
SfaNI GCATC 1 cut(s) 208
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 1 cut(s) 288
SphI GCATGC 1 cut(s) 98
Sse9I AATT 2 cut(s) 39, 283
SsiI CCGC 2 cut(s) 19, 48
StyI CCWWGG 1 cut(s) 291
TaiI ACGT 1 cut(s) 124
TasI AATT 2 cut(s) 39, 283
Tru1I TTAA 2 cut(s) 42, 156
Tru9I TTAA 2 cut(s) 42, 156
TscAI CASTG 1 cut(s) 64
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 1 cut(s) 313
TspRI CASTG 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 288
XceI RCATGY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.