Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005034

Physical Location & Seq

Genomic Coordinates Forward (+)

22641229 .. 22641606

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g29350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGGCGAATCCGCTCTCCCTCCCACTCAGCGCCACCGTCTTCATGCCGAAAAACGTTGCCGTTTCACGCCTTCCCATCGTCGACCCGTTCTTGCTGCCATACCACGTCGTCCCTCAGTTCCTCACCCTCGCCGATCTCCGCCTCTTCAAGAACAGCTCCCGCCTCCCGACTTTCTTCCCCGACAAGTTCATCGTCATCACCAAAACACCGAGTCCAATTTCACCGTCGATGACGCCACTATCACCCAGCCCGACTCTCCTCCATTCTTCAACCTCCGGCTCCACCTCGACTGCGTCTCTGATTCCGTCGACGAAGCCTGCATCTTCGATCCCGACGCCGATGCCTGCATCTCCGATTTCGTCGAAGATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

126

Amino Acids

13.27

Weight (kDa)

10.38

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30800 AT4G12950 AT4G29980
fragaria_vesca	FvH4_1g24910 FvH4_3g11440 FvH4_3g19970 FvH4_5g18240 FvH4_5g21920 FvH4_6g29350
malus_domestica	MD00G1097400.v1.1
prunus_persica	Prupe.4G102300_v2.0.a1
pyrus_communis	pycom05g24700
rosa_laevigata	RLG00000031490 RLG00000032358
rosa_multiflora	Rmu_sc0017459.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059350
rosa_rugosa	Rorug04G0431000 Rorug04G0432100 Rorug05G0042200
rosa_samantha	Rh4BG224100 Rh4CG235000 Rh4DG220900 Rh5BG055700 Rh5CG067100 Rh5CG067200 Rh5CG078900 Rh5DG054700 Rh5DG066900
rosa_wichuraiana	Rw4G019090 Rw5G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	16
AccI	GTMKAC	2 cut(s)	84, 311
AciI	CCGC	4 cut(s)	5, 14, 142, 163
AclI	AACGTT	1 cut(s)	57
AclWI	GGATC	1 cut(s)	325
AcyI	GRCGYC	2 cut(s)	236, 338
AgsI	TTSAA	2 cut(s)	151, 273
AjiI	CACGTC	1 cut(s)	109
AluBI	AGCT	1 cut(s)	159
AluI	AGCT	1 cut(s)	159
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	325
ApeKI	GCWGC	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	4 cut(s)	118, 193, 216, 237
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BcoDI	GTCTC	1 cut(s)	303
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	2 cut(s)	6, 98
BlsI	GCNGC	2 cut(s)	7, 99
BmgBI	CACGTC	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	283
BmsI	GCATC	4 cut(s)	332, 333, 359, 360
BpiI	GAAGAC	1 cut(s)	34
BsaHI	GRCGYC	2 cut(s)	236, 338
BseMII	CTCAG	2 cut(s)	43, 131
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	98
Bsp143I	GATC	2 cut(s)	136, 330
BspACI	CCGC	4 cut(s)	5, 14, 142, 163
BspCNI	CTCAG	2 cut(s)	42, 130
BspLI	GGNNCC	1 cut(s)	283
BspPI	GGATC	1 cut(s)	325
BsrBI	CCGCTC	1 cut(s)	16
BssMI	GATC	2 cut(s)	136, 330
BssNI	GRCGYC	2 cut(s)	236, 338
Bst4CI	ACNGT	2 cut(s)	40, 228
Bst6I	CTCTTC	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	236, 338
BstC8I	GCNNGC	2 cut(s)	321, 348
BstDEI	CTNAG	2 cut(s)	29, 117
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	139, 333
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	2 cut(s)	136, 330
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	321, 348
CfoI	GCGC	1 cut(s)	35
CseI	GACGC	3 cut(s)	244, 285, 346
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	4 cut(s)	159, 252, 282, 319
CviKI_1	RGCY	4 cut(s)	159, 252, 282, 319
DdeI	CTNAG	2 cut(s)	29, 117
DpnI	GATC	2 cut(s)	138, 332
DpnII	GATC	2 cut(s)	136, 330
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	1 cut(s)	49
FaiI	YATR	2 cut(s)	47, 103
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	170
FblI	GTMKAC	2 cut(s)	84, 311
Fnu4HI	GCNGC	2 cut(s)	6, 98
Fsp4HI	GCNGC	2 cut(s)	6, 98
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	6, 98
GsaI	CCCAGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	36
HapII	CCGG	1 cut(s)	279
HgaI	GACGC	3 cut(s)	244, 285, 346
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	2 cut(s)	236, 338
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HincII	GTYRAC	2 cut(s)	85, 312
HindII	GTYRAC	2 cut(s)	85, 312
HinfI	GANTC	4 cut(s)	10, 214, 256, 304
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	4 cut(s)	118, 193, 216, 237
Hpy166II	GTNNAC	2 cut(s)	85, 312
Hpy188I	TCNGA	2 cut(s)	303, 357
Hpy188III	TCNNGA	3 cut(s)	151, 169, 334
Hpy8I	GTNNAC	2 cut(s)	85, 312
Hpy99I	CGWCG	7 cut(s)	86, 113, 232, 313, 316, 340, 367
HpyAV	CCTTC	1 cut(s)	83
HpyCH4III	ACNGT	2 cut(s)	40, 228
HpyCH4IV	ACGT	2 cut(s)	57, 108
HpyCH4V	TGCA	2 cut(s)	323, 350
HpyF3I	CTNAG	2 cut(s)	29, 117
HpySE526I	ACGT	2 cut(s)	57, 108
Hsp92I	GRCGYC	2 cut(s)	236, 338
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	136, 330
LmnI	GCTCC	2 cut(s)	164, 287
LpnPI	CCDG	4 cut(s)	262, 292, 333, 360
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	4 cut(s)	332, 333, 359, 360
MaeII	ACGT	2 cut(s)	57, 108
MalI	GATC	2 cut(s)	138, 332
MbiI	CCGCTC	1 cut(s)	16
MboI	GATC	2 cut(s)	136, 330
MboII	GAAGA	5 cut(s)	34, 139, 169, 261, 318
MluCI	AATT	1 cut(s)	219
MlyI	GAGTC	2 cut(s)	223, 250
MnlI	CCTC	9 cut(s)	32, 126, 134, 140, 155, 176, 272, 286, 298
MspI	CCGG	1 cut(s)	279
NdeII	GATC	2 cut(s)	136, 330
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	283
PfeI	GAWTC	2 cut(s)	10, 304
PflFI	GACNNNGTC	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	7, 99
PleI	GAGTC	2 cut(s)	222, 250
PpsI	GAGTC	2 cut(s)	222, 250
Psp1406I	AACGTT	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	295
SalI	GTCGAC	2 cut(s)	83, 310
SatI	GCNGC	2 cut(s)	6, 98
Sau3AI	GATC	2 cut(s)	136, 330
SchI	GAGTC	2 cut(s)	223, 250
SetI	ASST	5 cut(s)	60, 111, 161, 278, 290
SfaNI	GCATC	4 cut(s)	332, 333, 359, 360
SgrDI	CGTCGACG	1 cut(s)	310
Sse9I	AATT	1 cut(s)	219
SsiI	CCGC	4 cut(s)	5, 14, 142, 163
TaaI	ACNGT	2 cut(s)	40, 228
TaiI	ACGT	2 cut(s)	60, 111
TaqI	TCGA	6 cut(s)	84, 230, 290, 311, 329, 365
TasI	AATT	1 cut(s)	219
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	10, 304
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	2 cut(s)	34, 181
TspGWI	ACGGA	1 cut(s)	297
Tth111I	GACNNNGTC	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	84, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.