Rh5CG067200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0005034
Physical Location & Seq
Reverse (-)
5071172 .. 5071519
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG067200.1

Sequence Viewer

Length: 348 bp
ATGGAGGCAGCGATCGACTCCGGGAGGTTTGCACACGTCATCACCGCCGACGATCATCTCTCGCCCACGACCGTCTCCCTTTCTGCAAACGACACTGTGTCACACCTCCTGGCCTCAGCGCCGCCTTCTCCTACATTGTCACTTCCGGCATCTCTTCTGGCCACTACAGTGTCGCAGCAGAACTTCCAGCACGCCACGGAGGCACCGATCAGCTCCAGGAGCTTCGTACAAGTCATCGCTGCCGAGACTCAGCTCTCTCTTCCACAGAGCATGACGGTTTTCCACTCCGAAAACAATGAAGAACCGGCCACAAACGAATTCTTGTCACCTGACCACATGGTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.21

Weight (kDa)

4.58

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 202, 340
AciI CCGC 2 cut(s) 45, 122
AcoI YGGCCR 2 cut(s) 159, 306
AcsI RAATTY 1 cut(s) 317
AdeI CACNNNGTG 1 cut(s) 340
AfaI GTAC 1 cut(s) 228
AflIII ACRYGT 1 cut(s) 34
AhdI GACNNNNNGTC 1 cut(s) 97
AjiI CACGTC 1 cut(s) 37
AjnI CCWGG 2 cut(s) 108, 215
AleI CACNNNNGTG 1 cut(s) 167
AluBI AGCT 3 cut(s) 213, 222, 253
AluI AGCT 3 cut(s) 213, 222, 253
Alw26I GTCTC 2 cut(s) 79, 239
AoxI GGCC 3 cut(s) 111, 159, 306
ApeKI GCWGC 3 cut(s) 8, 175, 239
ApoI RAATTY 1 cut(s) 317
AspLEI GCGC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 2 cut(s) 34, 318
BalI TGGCCA 1 cut(s) 161
BanI GGYRCC 2 cut(s) 202, 340
BbvCI CCTCAGC 1 cut(s) 115
BbvI GCAGC 3 cut(s) 20, 187, 226
BciT130I CCWGG 2 cut(s) 110, 217
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 79, 239
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 200
BisI GCNGC 4 cut(s) 9, 122, 176, 240
BlsI GCNGC 4 cut(s) 10, 123, 177, 241
Bme1390I CCNGG 3 cut(s) 22, 110, 217
BmeRI GACNNNNNGTC 1 cut(s) 97
BmgBI CACGTC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 204, 342
BmrFI CCNGG 3 cut(s) 22, 110, 217
BmsI GCATC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 115
BpuMI CCSGG 1 cut(s) 22
BsaJI CCNNGG 1 cut(s) 195
Bse118I RCCGGY 1 cut(s) 304
BseBI CCWGG 2 cut(s) 110, 217
BseDI CCNNGG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 129, 263
BseXI GCAGC 3 cut(s) 20, 187, 226
Bsh1285I CGRYCG 2 cut(s) 15, 72
BshFI GGCC 3 cut(s) 113, 161, 308
BshNI GGYRCC 2 cut(s) 202, 340
BsiEI CGRYCG 2 cut(s) 15, 72
BsiSI CCGG 3 cut(s) 21, 146, 305
BsmAI GTCTC 2 cut(s) 79, 239
BsmBI CGTCTC 1 cut(s) 79
BsnI GGCC 3 cut(s) 113, 161, 308
Bsp143I GATC 3 cut(s) 12, 52, 207
BspACI CCGC 2 cut(s) 45, 122
BspANI GGCC 3 cut(s) 113, 161, 308
BspCNI CTCAG 2 cut(s) 128, 262
BspLI GGNNCC 2 cut(s) 204, 342
BspT107I GGYRCC 2 cut(s) 202, 340
BsrFI RCCGGY 1 cut(s) 304
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 3 cut(s) 12, 52, 207
Bst2UI CCWGG 2 cut(s) 110, 217
Bst4CI ACNGT 4 cut(s) 73, 97, 169, 277
Bst6I CTCTTC 2 cut(s) 159, 264
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 3 cut(s) 115, 249, 345
BstDSI CCRYGG 1 cut(s) 195
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 3 cut(s) 15, 55, 210
BstMAI GTCTC 2 cut(s) 79, 239
BstMBI GATC 3 cut(s) 12, 52, 207
BstMCI CGRYCG 2 cut(s) 15, 72
BstMWI GCNNNNNNNGC 2 cut(s) 200, 219
BstNI CCWGG 2 cut(s) 110, 217
BstSCI CCNGG 3 cut(s) 20, 108, 215
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 20, 187, 226
BsuRI GGCC 3 cut(s) 113, 161, 308
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 220
BtrI CACGTC 1 cut(s) 37
BtsIMutI CAGTG 2 cut(s) 93, 174
Cac8I GCNNGC 1 cut(s) 192
CfoI GCGC 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 304
Csp6I GTAC 1 cut(s) 227
CviAII CATG 2 cut(s) 271, 337
CviJI RGCY 6 cut(s) 113, 161, 213, 222, 253, 308
CviKI_1 RGCY 6 cut(s) 113, 161, 213, 222, 253, 308
CviQI GTAC 1 cut(s) 227
DdeI CTNAG 3 cut(s) 115, 249, 345
DpnI GATC 3 cut(s) 14, 54, 209
DpnII GATC 3 cut(s) 12, 52, 207
DraIII CACNNNGTG 1 cut(s) 340
DriI GACNNNNNGTC 1 cut(s) 97
EaeI YGGCCR 2 cut(s) 159, 306
Eam1104I CTCTTC 2 cut(s) 159, 264
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 2 cut(s) 159, 264
EcoRI GAATTC 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 108, 215
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 2 cut(s) 274, 340
FaiI YATR 2 cut(s) 272, 338
FatI CATG 2 cut(s) 270, 336
Fnu4HI GCNGC 4 cut(s) 9, 122, 176, 240
Fsp4HI GCNGC 4 cut(s) 9, 122, 176, 240
GlaI GCGC 1 cut(s) 120
GluI GCNGC 4 cut(s) 9, 122, 176, 240
GsuI CTGGAG 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 3 cut(s) 113, 161, 308
HapII CCGG 3 cut(s) 21, 146, 305
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 274, 340
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 2 cut(s) 17, 247
HpaII CCGG 3 cut(s) 21, 146, 305
HphI GGTGA 2 cut(s) 34, 318
Hpy188I TCNGA 1 cut(s) 289
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 135
HpyCH4III ACNGT 4 cut(s) 73, 97, 169, 277
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 32, 86
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 219
HpyF3I CTNAG 3 cut(s) 115, 249, 345
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 274, 340
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 3 cut(s) 12, 52, 207
LmnI GCTCC 2 cut(s) 218, 219
Lsp1109I GCAGC 3 cut(s) 20, 187, 226
LweI GCATC 1 cut(s) 158
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 99, 138, 324
MalI GATC 3 cut(s) 14, 54, 209
MboI GATC 3 cut(s) 12, 52, 207
MboII GAAGA 3 cut(s) 146, 251, 311
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 1 cut(s) 317
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 2 cut(s) 11, 241
MnlI CCTC 4 cut(s) 18, 116, 124, 193
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 161
MspI CCGG 3 cut(s) 21, 146, 305
MspR9I CCNGG 3 cut(s) 22, 110, 217
MvaI CCWGG 2 cut(s) 110, 217
MwoI GCNNNNNNNGC 2 cut(s) 200, 219
NciI CCSGG 1 cut(s) 22
NdeII GATC 3 cut(s) 12, 52, 207
NlaIII CATG 2 cut(s) 274, 340
NlaIV GGNNCC 2 cut(s) 204, 342
NmeAIII GCCGAG 1 cut(s) 268
NmuCI GTSAC 3 cut(s) 99, 138, 324
OliI CACNNNNGTG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PfoI TCCNGGA 2 cut(s) 20, 215
PkrI GCNGC 4 cut(s) 10, 123, 177, 241
Ple19I CGATCG 1 cut(s) 15
PleI GAGTC 2 cut(s) 11, 241
PpsI GAGTC 2 cut(s) 11, 241
Psp6I CCWGG 2 cut(s) 108, 215
PspGI CCWGG 2 cut(s) 108, 215
PspN4I GGNNCC 2 cut(s) 204, 342
PvuI CGATCG 1 cut(s) 15
RsaI GTAC 1 cut(s) 228
RsaNI GTAC 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 4 cut(s) 9, 122, 176, 240
Sau3AI GATC 3 cut(s) 12, 52, 207
SchI GAGTC 2 cut(s) 11, 241
ScrFI CCNGG 3 cut(s) 22, 110, 217
SetI ASST 7 cut(s) 29, 39, 108, 215, 224, 255, 331
SfaNI GCATC 1 cut(s) 158
SfcI CTRYAG 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 1 cut(s) 317
SsiI CCGC 2 cut(s) 45, 122
StyD4I CCNGG 3 cut(s) 20, 108, 215
TaaI ACNGT 4 cut(s) 73, 97, 169, 277
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 15
TasI AATT 1 cut(s) 317
TauI GCSGC 1 cut(s) 124
TscAI CASTG 2 cut(s) 100, 174
TseFI GTSAC 3 cut(s) 99, 138, 324
TseI GCWGC 3 cut(s) 8, 175, 239
Tsp45I GTSAC 3 cut(s) 99, 138, 324
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 2 cut(s) 100, 174
XapI RAATTY 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.