FvH4_3g19970

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
13116006 .. 13116767
762 bp
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UTR
Exon/CDS
Intron
FvH4_3g19970.t1

Sequence Viewer

Length: 477 bp
ATGGCACCCAATCACCACCATCCACCACCTTCTCCTCATCACCGCCGTCGCTCTCACCCTCTTCAATCATTCCACCGCCAACCCCTCCGCCTCACCCCCAACCTCCTCACCACGTACAACCACCACCGCCATTACCTTCACCTCCACCTCCATCACCATCGCCACCTCCTCCACCGTCACCGCCTCAACCTCCCTCACCATCGCCGCCTCCACCACTTTCACCATCACCGCCCCCACTTTTTCTCTATCACCGCCGCCGCCTTCTCCGACAACACGAGTGACGGCGCTTTCTCAGGTGACTTCGGTAATCCGCGCTCCCTCCCACTCAGCGCCACCGTCTTCATGCTGGAAATCACCGTCGTGTCGCGCCTTCCCGTCGCAGACCCGTTCTTGCTGCCTTACCTCGTGGTTCCTCAGCGCCTCACCTTCGCCGATCTCTGCCTCTTTAAGAATAACTCTCGCCTCCCGGGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

18.57

Weight (kDa)

11.54

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 313, 367
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 1 cut(s) 65
AleI CACNNNNGTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 466
ApeKI GCWGC 1 cut(s) 394
AspLEI GCGC 5 cut(s) 287, 315, 332, 369, 420
AsuC2I CCSGG 2 cut(s) 467, 468
AvaI CYCGRG 1 cut(s) 466
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 2 cut(s) 274, 404
BbsI GAAGAC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 414
BbvI GCAGC 1 cut(s) 381
BccI CCATC 5 cut(s) 27, 159, 165, 207, 231
BceAI ACGGC 2 cut(s) 30, 298
BcnI CCSGG 2 cut(s) 467, 468
BfoI RGCGCY 3 cut(s) 288, 333, 421
BisI GCNGC 4 cut(s) 205, 255, 258, 395
BlsI GCNGC 4 cut(s) 206, 256, 259, 396
Bme1390I CCNGG 2 cut(s) 467, 468
BmeT110I CYCGRG 1 cut(s) 466
BmiI GGNNCC 2 cut(s) 6, 411
BmrFI CCNGG 2 cut(s) 467, 468
BpiI GAAGAC 1 cut(s) 331
Bpu10I CCTNAGC 1 cut(s) 414
BpuMI CCSGG 2 cut(s) 467, 468
BsaAI YACGTR 1 cut(s) 114
BsaJI CCNNGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 466
BseGI GGATG 1 cut(s) 19
BseMII CTCAG 3 cut(s) 306, 340, 428
BseRI GAGGAG 3 cut(s) 24, 95, 158
BseXI GCAGC 1 cut(s) 381
Bsh1236I CGCG 2 cut(s) 313, 367
BshNI GGYRCC 1 cut(s) 4
BsiHKCI CYCGRG 1 cut(s) 466
BsiSI CCGG 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 466
Bsp143I GATC 1 cut(s) 433
BspCNI CTCAG 3 cut(s) 305, 339, 427
BspFNI CGCG 2 cut(s) 313, 367
BspLI GGNNCC 2 cut(s) 6, 411
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 466
BssMI GATC 1 cut(s) 433
BssSI CACGAG 2 cut(s) 274, 404
Bst2BI CACGAG 2 cut(s) 274, 404
Bst4CI ACNGT 3 cut(s) 176, 337, 358
Bst6I CTCTTC 1 cut(s) 66
BstBAI YACGTR 1 cut(s) 114
BstDEI CTNAG 3 cut(s) 292, 326, 414
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 2 cut(s) 313, 367
BstH2I RGCGCY 3 cut(s) 288, 333, 421
BstHHI GCGC 5 cut(s) 287, 315, 332, 369, 420
BstKTI GATC 1 cut(s) 436
BstMBI GATC 1 cut(s) 433
BstSCI CCNGG 2 cut(s) 465, 466
BstUI CGCG 2 cut(s) 313, 367
BstV1I GCAGC 1 cut(s) 381
BstV2I GAAGAC 1 cut(s) 331
BtgZI GCGATG 2 cut(s) 143, 185
BtsCI GGATG 1 cut(s) 19
CfoI GCGC 5 cut(s) 287, 315, 332, 369, 420
Cfr9I CCCGGG 1 cut(s) 466
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 343
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 3 cut(s) 292, 326, 414
DpnI GATC 1 cut(s) 435
DpnII GATC 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 66
EarI CTCTTC 1 cut(s) 66
EciI GGCGGA 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 466
FaeI CATG 1 cut(s) 346
FaiI YATR 1 cut(s) 344
FatI CATG 1 cut(s) 342
Fnu4HI GCNGC 4 cut(s) 205, 255, 258, 395
FokI GGATG 1 cut(s) 6
Fsp4HI GCNGC 4 cut(s) 205, 255, 258, 395
GlaI GCGC 5 cut(s) 286, 314, 331, 368, 419
GluI GCNGC 4 cut(s) 205, 255, 258, 395
HaeII RGCGCY 3 cut(s) 288, 333, 421
HapII CCGG 1 cut(s) 467
HhaI GCGC 5 cut(s) 287, 315, 332, 369, 420
Hin1II CATG 1 cut(s) 346
Hin6I GCGC 5 cut(s) 285, 313, 330, 367, 418
HinP1I GCGC 5 cut(s) 285, 313, 330, 367, 418
HpaII CCGG 1 cut(s) 467
Hpy188I TCNGA 1 cut(s) 268
Hpy99I CGWCG 3 cut(s) 51, 362, 380
HpyAV CCTTC 5 cut(s) 39, 146, 271, 380, 436
HpyCH4III ACNGT 3 cut(s) 176, 337, 358
HpyCH4IV ACGT 1 cut(s) 113
HpyF3I CTNAG 3 cut(s) 292, 326, 414
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 1 cut(s) 346
HspAI GCGC 5 cut(s) 285, 313, 330, 367, 418
Kzo9I GATC 1 cut(s) 433
LmnI GCTCC 1 cut(s) 320
LpnPI CCDG 2 cut(s) 279, 332
Lsp1109I GCAGC 1 cut(s) 381
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 3 cut(s) 176, 278, 296
MalI GATC 1 cut(s) 435
MboI GATC 1 cut(s) 433
MboII GAAGA 2 cut(s) 53, 331
MmeI TCCRAC 1 cut(s) 291
MseI TTAA 1 cut(s) 447
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 467
MspR9I CCNGG 2 cut(s) 467, 468
MvnI CGCG 2 cut(s) 313, 367
NciI CCSGG 2 cut(s) 467, 468
NdeII GATC 1 cut(s) 433
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 6, 411
NmuCI GTSAC 3 cut(s) 176, 278, 296
OliI CACNNNNGTG 1 cut(s) 359
PkrI GCNGC 4 cut(s) 206, 256, 259, 396
Ppu21I YACGTR 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 6, 411
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 447
SatI GCNGC 4 cut(s) 205, 255, 258, 395
Sau3AI GATC 1 cut(s) 433
ScrFI CCNGG 2 cut(s) 467, 468
SmaI CCCGGG 1 cut(s) 468
SmiMI CAYNNNNRTG 1 cut(s) 359
StyD4I CCNGG 2 cut(s) 465, 466
TaaI ACNGT 3 cut(s) 176, 337, 358
TaiI ACGT 1 cut(s) 116
TauI GCSGC 3 cut(s) 207, 257, 260
Tru1I TTAA 1 cut(s) 447
Tru9I TTAA 1 cut(s) 447
TseFI GTSAC 3 cut(s) 176, 278, 296
TseI GCWGC 1 cut(s) 394
Tsp45I GTSAC 3 cut(s) 176, 278, 296
TspDTI ATGAA 1 cut(s) 331
TspMI CCCGGG 1 cut(s) 466
XmaI CCCGGG 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.