Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005034

Physical Location & Seq

Genomic Coordinates Forward (+)

4554965 .. 4556008

Gene Structure 1044 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG055700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGACCGTCTTCCAGTCCAGAAACGACGACGTACCGGCCACAGACGAATTCTTCCTACCGGACCACGTGGTGCCTCAGCGGCTCACGTTCGCCGACCTGATTCTCTTCGAGACCGGTACTCGTCTTCCGACGCTCCTTCCCGGAAGATTTGTGACCATAACTAACAACACCGCCGCGAATTACACAGTGAACAACCGTCGCATAGTCCAGCCCGACGTCTATGTCACAGACAGTGTAGTCGTGCATCTGCTGGCTAAATACTCCAACGGCGGCGATACTAGTTCCGGCAGCGACCTCCTCGCGTTCTCCACCCTCTTGTTCTCTCTCGGGGTTTTTACTATTTTAGTGATCCTCGTCTTGATCTACAACTGGTGTCCTTACATATTTGGAGGTGTGGCCTTGGGAGAAGGGGTCGGTGCGGTGGGAAGGATTGTGGCAGGTGGAGGAGGCCCCGTCGAAGGCAACCGAGGATTCCTCAGCCGAATTGCTGGTGGCGTTGCGGGGGTTCCGGGGAGCGTGTTGAGCATAGGGAGGGCGGCGCAGCCACGTAACCCTGAATTAGATCCACTTCTTGACCGTGATGAACCACAGGTAAATCAGGATGTGGAATCGACAGAAGCAGCGGGTGCCAATGACCACGGAGACGAAATTGTGGTGGATGAGAACCAGCAGCAGCAGCTTCCGGCCGACCAGGCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

233

Amino Acids

24.82

Weight (kDa)

4.37

Isoelectric Point (pI)

31.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30800 AT4G12950 AT4G29980
fragaria_vesca	FvH4_1g24910 FvH4_3g11440 FvH4_3g19970 FvH4_5g18240 FvH4_5g21920 FvH4_6g29350
malus_domestica	MD00G1097400.v1.1
prunus_persica	Prupe.4G102300_v2.0.a1
pyrus_communis	pycom05g24700
rosa_laevigata	RLG00000031490 RLG00000032358
rosa_multiflora	Rmu_sc0017459.1_g000003
rosa_roxburghii	Rroxscaffold_1G00059350
rosa_rugosa	Rorug04G0431000 Rorug04G0432100 Rorug05G0042200
rosa_samantha	Rh4BG224100 Rh4CG235000 Rh4DG220900 Rh5BG055700 Rh5CG067100 Rh5CG067200 Rh5CG078900 Rh5DG054700 Rh5DG066900
rosa_wichuraiana	Rw4G019090 Rw5G011840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	428
AasI	GACNNNNNNGTC	2 cut(s)	221, 236
AatII	GACGTC	1 cut(s)	219
Acc36I	ACCTGC	1 cut(s)	428
AccB1I	GGYRCC	2 cut(s)	70, 626
AccII	CGCG	2 cut(s)	176, 302
AciI	CCGC	8 cut(s)	79, 171, 174, 270, 419, 500, 536, 623
AclWI	GGATC	2 cut(s)	343, 557
AcoI	YGGCCR	2 cut(s)	36, 684
AcsI	RAATTY	1 cut(s)	47
AcvI	CACGTG	1 cut(s)	67
AcyI	GRCGYC	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	33, 118
AfiI	CCNNNNNNNGG	1 cut(s)	458
AgeI	ACCGGT	1 cut(s)	113
AhlI	ACTAGT	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	690
AluBI	AGCT	1 cut(s)	679
AluI	AGCT	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	104, 636
AlwI	GGATC	2 cut(s)	343, 557
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	5 cut(s)	36, 396, 448, 684, 693
ApeKI	GCWGC	6 cut(s)	288, 541, 620, 670, 673, 676
ApoI	RAATTY	1 cut(s)	47
AsiGI	ACCGGT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	3 cut(s)	61, 449, 694
AsuC2I	CCSGG	2 cut(s)	141, 510
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	61
BanI	GGYRCC	2 cut(s)	70, 626
BbrPI	CACGTG	1 cut(s)	67
BbsI	GAAGAC	1 cut(s)	116
BbvCI	CCTCAGC	2 cut(s)	75, 476
BbvI	GCAGC	6 cut(s)	300, 553, 632, 682, 685, 688
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	1 cut(s)	692
BcnI	CCSGG	2 cut(s)	141, 510
BcoDI	GTCTC	2 cut(s)	104, 636
BcuI	ACTAGT	1 cut(s)	278
BfaI	CTAG	1 cut(s)	279
BfuAI	ACCTGC	1 cut(s)	428
BglI	GCCNNNNNGGC	2 cut(s)	79, 692
Bme1390I	CCNGG	3 cut(s)	141, 510, 692
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	61, 449, 694
BmiI	GGNNCC	4 cut(s)	72, 451, 507, 628
BmrFI	CCNGG	3 cut(s)	141, 510, 692
BmrI	ACTGGG	1 cut(s)	691
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	691
BpiI	GAAGAC	1 cut(s)	116
BplI	GAGNNNNNCTC	2 cut(s)	459, 491
Bpu10I	CCTNAGC	2 cut(s)	75, 476
BpuMI	CCSGG	2 cut(s)	141, 510
BsaAI	YACGTR	2 cut(s)	67, 548
BsaHI	GRCGYC	1 cut(s)	216
BsaI	GGTCTC	1 cut(s)	104
BsaJI	CCNNGG	4 cut(s)	399, 466, 509, 637
BsaWI	WCCGGW	2 cut(s)	58, 113
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 438, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	458
Bse118I	RCCGGY	2 cut(s)	34, 113
Bse1I	ACTGG	3 cut(s)	13, 374, 697
BseBI	CCWGG	1 cut(s)	692
BseDI	CCNNGG	4 cut(s)	399, 466, 509, 637
BseGI	GGATG	2 cut(s)	607, 664
BseLI	CCNNNNNNNGG	1 cut(s)	458
BseMII	CTCAG	2 cut(s)	89, 490
BseNI	ACTGG	3 cut(s)	13, 374, 697
BseRI	GAGGAG	2 cut(s)	287, 459
BseX3I	CGGCCG	1 cut(s)	684
BseXI	GCAGC	6 cut(s)	300, 553, 632, 682, 685, 688
Bsh1236I	CGCG	2 cut(s)	176, 302
Bsh1285I	CGRYCG	1 cut(s)	687
BshFI	GGCC	5 cut(s)	38, 398, 450, 686, 695
BshNI	GGYRCC	2 cut(s)	70, 626
BshTI	ACCGGT	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	7 cut(s)	35, 59, 114, 141, 285, 509, 683
BslI	CCNNNNNNNGG	1 cut(s)	458
BsmAI	GTCTC	2 cut(s)	104, 636
BsmBI	CGTCTC	1 cut(s)	636
BsnI	GGCC	5 cut(s)	38, 398, 450, 686, 695
Bso31I	GGTCTC	1 cut(s)	104
BsoBI	CYCGRG	1 cut(s)	326
Bsp143I	GATC	3 cut(s)	348, 360, 562
BspACI	CCGC	8 cut(s)	79, 171, 174, 270, 419, 500, 536, 623
BspANI	GGCC	5 cut(s)	38, 398, 450, 686, 695
BspCNI	CTCAG	2 cut(s)	88, 489
BspFNI	CGCG	2 cut(s)	176, 302
BspLI	GGNNCC	4 cut(s)	72, 451, 507, 628
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	2 cut(s)	343, 557
BspT107I	GGYRCC	2 cut(s)	70, 626
BspTNI	GGTCTC	1 cut(s)	104
BsrFI	RCCGGY	2 cut(s)	34, 113
BsrI	ACTGG	3 cut(s)	13, 374, 697
BssAI	RCCGGY	2 cut(s)	34, 113
BssECI	CCNNGG	4 cut(s)	399, 466, 509, 637
BssMI	GATC	3 cut(s)	348, 360, 562
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	1 cut(s)	692
Bst4CI	ACNGT	5 cut(s)	7, 187, 197, 233, 578
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	1 cut(s)	216
BstAPI	GCANNNNNTGC	1 cut(s)	626
BstBAI	YACGTR	2 cut(s)	67, 548
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	2 cut(s)	75, 476
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	2 cut(s)	607, 664
BstFNI	CGCG	2 cut(s)	176, 302
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	3 cut(s)	351, 363, 565
BstMAI	GTCTC	2 cut(s)	104, 636
BstMBI	GATC	3 cut(s)	348, 360, 562
BstMCI	CGRYCG	1 cut(s)	687
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 522, 626, 676, 692
BstNI	CCWGG	1 cut(s)	692
BstSCI	CCNGG	3 cut(s)	139, 508, 690
BstUI	CGCG	2 cut(s)	176, 302
BstV1I	GCAGC	6 cut(s)	300, 553, 632, 682, 685, 688
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
BstZI	CGGCCG	1 cut(s)	684
BsuRI	GGCC	5 cut(s)	38, 398, 450, 686, 695
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	607, 664
BtsIMutI	CAGTG	2 cut(s)	192, 238
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	541
Cfr10I	RCCGGY	2 cut(s)	34, 113
Cfr13I	GGNCC	3 cut(s)	61, 449, 694
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	32, 117
CspAI	ACCGGT	1 cut(s)	113
CviQI	GTAC	2 cut(s)	32, 117
DdeI	CTNAG	2 cut(s)	75, 476
DpnI	GATC	3 cut(s)	350, 362, 564
DpnII	GATC	3 cut(s)	348, 360, 562
DraIII	CACNNNGTG	1 cut(s)	70
DrdI	GACNNNNNNGTC	2 cut(s)	221, 236
DseDI	GACNNNNNNGTC	2 cut(s)	221, 236
EaeI	YGGCCR	2 cut(s)	36, 684
EagI	CGGCCG	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EclXI	CGGCCG	1 cut(s)	684
Eco130I	CCWWGG	1 cut(s)	399
Eco31I	GGTCTC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	61
Eco52I	CGGCCG	1 cut(s)	684
Eco72I	CACGTG	1 cut(s)	67
Eco88I	CYCGRG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	449
EcoRI	GAATTC	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	690
EcoT14I	CCWWGG	1 cut(s)	399
ErhI	CCWWGG	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	636
FaiI	YATR	5 cut(s)	158, 203, 222, 383, 527
FauI	CCCGC	2 cut(s)	493, 616
FokI	GGATG	2 cut(s)	614, 671
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	540
HaeIII	GGCC	5 cut(s)	38, 398, 450, 686, 695
HapII	CCGG	7 cut(s)	35, 59, 114, 141, 285, 509, 683
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HinfI	GANTC	3 cut(s)	100, 471, 608
HpaII	CCGG	7 cut(s)	35, 59, 114, 141, 285, 509, 683
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	5 cut(s)	18, 109, 358, 572, 599
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	6 cut(s)	29, 32, 133, 201, 218, 458
HpyAV	CCTTC	4 cut(s)	146, 401, 420, 452
HpyCH4III	ACNGT	5 cut(s)	7, 187, 197, 233, 578
HpyCH4IV	ACGT	5 cut(s)	30, 66, 86, 216, 547
HpyCH4V	TGCA	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 522, 626, 676, 692
HpyF3I	CTNAG	2 cut(s)	75, 476
HpySE526I	ACGT	5 cut(s)	30, 66, 86, 216, 547
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	1 cut(s)	539
Kzo9I	GATC	3 cut(s)	348, 360, 562
LmnI	GCTCC	2 cut(s)	138, 513
Lsp1109I	GCAGC	6 cut(s)	300, 553, 632, 682, 685, 688
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	5 cut(s)	30, 66, 86, 216, 547
MaeIII	GTNAC	3 cut(s)	151, 223, 548
MalI	GATC	3 cut(s)	350, 362, 564
MboI	GATC	3 cut(s)	348, 360, 562
MboII	GAAGA	4 cut(s)	43, 97, 116, 156
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	5 cut(s)	47, 178, 483, 557, 648
MmeI	TCCRAC	2 cut(s)	152, 288
MspA1I	CMGCKG	2 cut(s)	79, 623
MspI	CCGG	7 cut(s)	35, 59, 114, 141, 285, 509, 683
MspR9I	CCNGG	3 cut(s)	141, 510, 692
MvaI	CCWGG	1 cut(s)	692
MvnI	CGCG	2 cut(s)	176, 302
MwoI	GCNNNNNNNGC	5 cut(s)	79, 522, 626, 676, 692
NciI	CCSGG	2 cut(s)	141, 510
NdeII	GATC	3 cut(s)	348, 360, 562
NlaIV	GGNNCC	4 cut(s)	72, 451, 507, 628
NmuCI	GTSAC	2 cut(s)	151, 223
PaqCI	CACCTGC	1 cut(s)	428
PfeI	GAWTC	3 cut(s)	100, 471, 608
PfoI	TCCNGGA	1 cut(s)	139
PinAI	ACCGGT	1 cut(s)	113
PmaCI	CACGTG	1 cut(s)	67
PmlI	CACGTG	1 cut(s)	67
Ppu21I	YACGTR	2 cut(s)	67, 548
Psp6I	CCWGG	1 cut(s)	690
PspCI	CACGTG	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	690
PspN4I	GGNNCC	4 cut(s)	72, 451, 507, 628
PspPI	GGNCC	3 cut(s)	61, 449, 694
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	2 cut(s)	33, 118
RsaNI	GTAC	2 cut(s)	32, 117
Sau3AI	GATC	3 cut(s)	348, 360, 562
Sau96I	GGNCC	3 cut(s)	61, 449, 694
ScrFI	CCNGG	3 cut(s)	141, 510, 692
SfaNI	GCATC	1 cut(s)	253
SfiI	GGCCNNNNNGGCC	1 cut(s)	692
SinI	GGWCC	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	278
Sse9I	AATT	5 cut(s)	47, 178, 483, 557, 648
SsiI	CCGC	8 cut(s)	79, 171, 174, 270, 419, 500, 536, 623
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	3 cut(s)	139, 508, 690
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	5 cut(s)	7, 187, 197, 233, 578
TaiI	ACGT	5 cut(s)	33, 69, 89, 219, 550
TaqI	TCGA	3 cut(s)	108, 456, 611
TasI	AATT	5 cut(s)	47, 178, 483, 557, 648
TauI	GCSGC	4 cut(s)	82, 176, 273, 539
TfiI	GAWTC	3 cut(s)	100, 471, 608
TscAI	CASTG	2 cut(s)	192, 238
TseFI	GTSAC	2 cut(s)	151, 223
TseI	GCWGC	6 cut(s)	288, 541, 620, 670, 673, 676
Tsp45I	GTSAC	2 cut(s)	151, 223
TspDTI	ATGAA	1 cut(s)	597
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	192, 238
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	47
XspI	CTAG	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.