Rroxscaffold_1G00059350

Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005034
Physical Location & Seq
Forward (+)
81359474 .. 81360337
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00059350.1

Sequence Viewer

Length: 864 bp
ATGGCGCCTCCATTTCTCTTCATTCTCCTCATCGCCGCCTCTCTCACCCTCTTCAATCCATCCTCCTCCGCCGCCGCCTTCGCTTCTCCCCCAACCACCTCACCCCCATCACCATCGCCACCTCCACCTCCACCTCCATCACCATCACCGCCGCCGCCGTCACCTCCATCATCACCGCCGCCGCTGCGATCAAGAATCTCGAGACCATCACGACTTCCGCCGTCGCCTCCATCTCCACTGCCTCAGCCTCCTCCGGCGGCAAGAGCGACGGGGCAGCAACTCAACAACATCATCGACGCTTTGATCGGCTCAGGAGACTTCGGGAGCTGGGTCAACATCATCACGGCCGCGAATCCGCTCGCCCTTCCACTGAGCGCCACCGTCTTCGTGCCTCAAAACGACGCCGTGTCGCGCGTGCCCGCCACCGACCCGTTCCTGTTGCCTTACCACGTGGTGCCTCAGCGGCTCACCTTCGCCGACCTCCGCCTCTTCAAGACCAACTCTCGCCTCCCGACTCTCCTTCCCGGAAAGTTCATCGTCGTCACCAGCAATTCCGAGTCCAATTTCACCGTCGACGACTCGACTATCACCCAGCCCGACGTCTACGTCACCGCCAACGTCGTCGTCCACGGCGTCGCTAGGGTTCTTGATTACTCTGTTTACGGCGTCGCAACCGTCGACTCTATGCCGAAGCCAAAGCAGCAGCCGTCGCCAGCGCCGCCGAGTCCAGGGCAGCTTCTTCCCGCCGGCGTCAGCATCCCGCCGTGGAAGTCCGGTGCGACAACGCCGTGCCTCTGCGTTCAGTTTCCGGTTGGATTAATGGTGGCTTGTGCAGTTTTGGGGTGGAGGAATTACATTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

287

Amino Acids

30.15

Weight (kDa)

9.37

Isoelectric Point (pI)

82.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 118 - 216 3.2e-11 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 605
AatII GACGTC 1 cut(s) 603
AccB1I GGYRCC 2 cut(s) 4, 454
AccBSI CCGCTC 1 cut(s) 358
AccI GTMKAC 3 cut(s) 573, 603, 678
AccII CGCG 3 cut(s) 350, 412, 414
AcoI YGGCCR 1 cut(s) 345
AcvI CACGTG 1 cut(s) 451
AcyI GRCGYC 6 cut(s) 5, 402, 600, 633, 666, 750
AdeI CACNNNGTG 1 cut(s) 454
AfiI CCNNNNNNNGG 1 cut(s) 728
AgsI TTSAA 2 cut(s) 55, 493
AhdI GACNNNNNGTC 1 cut(s) 406
AjnI CCWGG 1 cut(s) 727
AluBI AGCT 2 cut(s) 327, 736
AluI AGCT 2 cut(s) 327, 736
Alw26I GTCTC 2 cut(s) 196, 309
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 5 cut(s) 184, 274, 700, 703, 733
AseI ATTAAT 1 cut(s) 818
AspLEI GCGC 4 cut(s) 7, 377, 414, 718
AsuC2I CCSGG 1 cut(s) 525
AvaI CYCGRG 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 420
BanI GGYRCC 2 cut(s) 4, 454
BbrPI CACGTG 1 cut(s) 451
BbsI GAAGAC 1 cut(s) 376
BbvCI CCTCAGC 2 cut(s) 243, 459
BbvI GCAGC 5 cut(s) 171, 286, 712, 715, 745
BccI CCATC 8 cut(s) 67, 115, 121, 145, 151, 175, 214, 238
BceAI ACGGC 9 cut(s) 142, 205, 360, 389, 646, 679, 691, 748, 772
BciT130I CCWGG 1 cut(s) 729
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 196, 309
BfaI CTAG 1 cut(s) 639
BfoI RGCGCY 3 cut(s) 8, 378, 719
BglI GCCNNNNNGGC 1 cut(s) 463
Bme1390I CCNGG 2 cut(s) 525, 729
BmeRI GACNNNNNGTC 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 199
BmiI GGNNCC 2 cut(s) 6, 456
BmrFI CCNGG 2 cut(s) 525, 729
BmsI GCATC 1 cut(s) 765
BpiI GAAGAC 1 cut(s) 376
Bpu10I CCTNAGC 3 cut(s) 243, 310, 459
BpuMI CCSGG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 6 cut(s) 5, 402, 600, 633, 666, 750
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 628, 728, 764
BsaWI WCCGGW 2 cut(s) 773, 808
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse118I RCCGGY 1 cut(s) 746
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 628, 728, 764
BseGI GGATG 2 cut(s) 59, 756
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMII CTCAG 4 cut(s) 257, 324, 362, 473
BseRI GAGGAG 3 cut(s) 17, 55, 240
BseSI GKGCMC 1 cut(s) 420
BseX3I CGGCCG 1 cut(s) 345
BseXI GCAGC 5 cut(s) 171, 286, 712, 715, 745
BseYI CCCAGC 2 cut(s) 327, 591
BsgI GTGCAG 1 cut(s) 852
Bsh1236I CGCG 3 cut(s) 350, 412, 414
Bsh1285I CGRYCG 1 cut(s) 348
BshFI GGCC 1 cut(s) 347
BshNI GGYRCC 2 cut(s) 4, 454
BsiEI CGRYCG 1 cut(s) 348
BsiHKCI CYCGRG 1 cut(s) 199
BsiSI CCGG 5 cut(s) 254, 525, 747, 774, 809
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 2 cut(s) 196, 309
BsnI GGCC 1 cut(s) 347
Bso31I GGTCTC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 188, 303
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 4 cut(s) 256, 323, 363, 472
BspFNI CGCG 3 cut(s) 350, 412, 414
BspLI GGNNCC 2 cut(s) 6, 456
BspT107I GGYRCC 2 cut(s) 4, 454
BspTNI GGTCTC 1 cut(s) 196
BsrBI CCGCTC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 746
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 3 cut(s) 628, 728, 764
BssMI GATC 2 cut(s) 188, 303
BssNI GRCGYC 6 cut(s) 5, 402, 600, 633, 666, 750
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 3 cut(s) 382, 571, 676
Bst6I CTCTTC 3 cut(s) 23, 56, 494
BstACI GRCGYC 6 cut(s) 5, 402, 600, 633, 666, 750
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 5 cut(s) 360, 416, 420, 714, 748
BstDEI CTNAG 4 cut(s) 243, 310, 371, 459
BstDSI CCRYGG 2 cut(s) 628, 764
BstF5I GGATG 2 cut(s) 59, 756
BstFNI CGCG 3 cut(s) 350, 412, 414
BstH2I RGCGCY 3 cut(s) 8, 378, 719
BstHHI GCGC 4 cut(s) 7, 377, 414, 718
BstKTI GATC 2 cut(s) 191, 306
BstMAI GTCTC 2 cut(s) 196, 309
BstMBI GATC 2 cut(s) 188, 303
BstMCI CGRYCG 1 cut(s) 348
BstMWI GCNNNNNNNGC 7 cut(s) 80, 184, 263, 463, 700, 709, 718
BstNI CCWGG 1 cut(s) 729
BstSCI CCNGG 2 cut(s) 523, 727
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 3 cut(s) 350, 412, 414
BstV1I GCAGC 5 cut(s) 171, 286, 712, 715, 745
BstV2I GAAGAC 1 cut(s) 376
BstZI CGGCCG 1 cut(s) 345
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 2 cut(s) 628, 764
BtgZI GCGATG 2 cut(s) 16, 99
BtsCI GGATG 2 cut(s) 59, 756
BtsI GCAGTG 1 cut(s) 236
BtsIMutI CAGTG 2 cut(s) 236, 368
Cac8I GCNNGC 5 cut(s) 360, 416, 420, 714, 748
CfoI GCGC 4 cut(s) 7, 377, 414, 718
Cfr10I RCCGGY 1 cut(s) 746
CseI GACGC 5 cut(s) 305, 410, 622, 655, 739
DdeI CTNAG 4 cut(s) 243, 310, 371, 459
DinI GGCGCC 1 cut(s) 6
DpnI GATC 2 cut(s) 190, 305
DpnII GATC 2 cut(s) 188, 303
DraIII CACNNNGTG 1 cut(s) 454
DrdI GACNNNNNNGTC 1 cut(s) 605
DriI GACNNNNNGTC 1 cut(s) 406
DseDI GACNNNNNNGTC 1 cut(s) 605
EaeI YGGCCR 1 cut(s) 345
EagI CGGCCG 1 cut(s) 345
Eam1104I CTCTTC 3 cut(s) 23, 56, 494
Eam1105I GACNNNNNGTC 1 cut(s) 406
EarI CTCTTC 3 cut(s) 23, 56, 494
EciI GGCGGA 3 cut(s) 58, 207, 473
EclXI CGGCCG 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 196
Eco52I CGGCCG 1 cut(s) 345
Eco72I CACGTG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 727
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaiI YATR 1 cut(s) 686
FauI CCCGC 3 cut(s) 427, 751, 768
FblI GTMKAC 3 cut(s) 573, 603, 678
FokI GGATG 2 cut(s) 46, 743
FspBI CTAG 1 cut(s) 639
GlaI GCGC 4 cut(s) 6, 376, 413, 717
GsaI CCCAGC 2 cut(s) 331, 595
HaeII RGCGCY 3 cut(s) 8, 378, 719
HaeIII GGCC 1 cut(s) 347
HapII CCGG 5 cut(s) 254, 525, 747, 774, 809
HgaI GACGC 5 cut(s) 305, 410, 622, 655, 739
HhaI GCGC 4 cut(s) 7, 377, 414, 718
Hin1I GRCGYC 6 cut(s) 5, 402, 600, 633, 666, 750
Hin6I GCGC 4 cut(s) 5, 375, 412, 716
HinP1I GCGC 4 cut(s) 5, 375, 412, 716
HincII GTYRAC 3 cut(s) 334, 574, 679
HindII GTYRAC 3 cut(s) 334, 574, 679
HinfI GANTC 7 cut(s) 195, 352, 514, 557, 578, 680, 724
HpaII CCGG 5 cut(s) 254, 525, 747, 774, 809
Hpy166II GTNNAC 6 cut(s) 334, 574, 604, 628, 661, 679
Hpy188I TCNGA 1 cut(s) 556
Hpy188III TCNNGA 9 cut(s) 192, 199, 201, 210, 312, 322, 493, 511, 647
Hpy8I GTNNAC 6 cut(s) 334, 574, 604, 628, 661, 679
HpyAV CCTTC 4 cut(s) 88, 374, 481, 530
HpyCH4III ACNGT 3 cut(s) 382, 571, 676
HpyCH4IV ACGT 4 cut(s) 450, 600, 606, 618
HpyCH4V TGCA 1 cut(s) 833
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 184, 263, 463, 700, 709, 718
HpyF3I CTNAG 4 cut(s) 243, 310, 371, 459
HpySE526I ACGT 4 cut(s) 450, 600, 606, 618
Hsp92I GRCGYC 6 cut(s) 5, 402, 600, 633, 666, 750
HspAI GCGC 4 cut(s) 5, 375, 412, 716
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 746
KroNI GCCGGC 1 cut(s) 748
Kzo9I GATC 2 cut(s) 188, 303
LmnI GCTCC 1 cut(s) 324
Lsp1109I GCAGC 5 cut(s) 171, 286, 712, 715, 745
LweI GCATC 1 cut(s) 765
MaeI CTAG 1 cut(s) 639
MaeII ACGT 4 cut(s) 450, 600, 606, 618
MaeIII GTNAC 3 cut(s) 159, 541, 607
MalI GATC 2 cut(s) 190, 305
MbiI CCGCTC 1 cut(s) 358
MboI GATC 2 cut(s) 188, 303
MboII GAAGA 5 cut(s) 10, 43, 376, 481, 731
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 3 cut(s) 550, 562, 850
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 5 cut(s) 508, 566, 572, 674, 733
MmeI TCCRAC 1 cut(s) 793
MreI CGCCGGCG 1 cut(s) 746
MroNI GCCGGC 1 cut(s) 746
MseI TTAA 1 cut(s) 818
MspA1I CMGCKG 2 cut(s) 184, 463
MspI CCGG 5 cut(s) 254, 525, 747, 774, 809
MspR9I CCNGG 2 cut(s) 525, 729
MvaI CCWGG 1 cut(s) 729
MvnI CGCG 3 cut(s) 350, 412, 414
MwoI GCNNNNNNNGC 7 cut(s) 80, 184, 263, 463, 700, 709, 718
NaeI GCCGGC 1 cut(s) 748
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 525
NdeII GATC 2 cut(s) 188, 303
NgoMIV GCCGGC 1 cut(s) 746
NlaIV GGNNCC 2 cut(s) 6, 456
NmeAIII GCCGAG 1 cut(s) 747
NmuCI GTSAC 3 cut(s) 159, 541, 607
PaeR7I CTCGAG 1 cut(s) 199
PcsI WCGNNNNNNNCGW 2 cut(s) 630, 675
PdiI GCCGGC 1 cut(s) 748
PfeI GAWTC 2 cut(s) 195, 352
PfoI TCCNGGA 1 cut(s) 523
PleI GAGTC 5 cut(s) 508, 565, 572, 674, 732
PluTI GGCGCC 1 cut(s) 8
PmaCI CACGTG 1 cut(s) 451
PmlI CACGTG 1 cut(s) 451
PpsI GAGTC 5 cut(s) 508, 565, 572, 674, 732
Ppu21I YACGTR 1 cut(s) 451
PshBI ATTAAT 1 cut(s) 818
Psp6I CCWGG 1 cut(s) 727
PspCI CACGTG 1 cut(s) 451
PspFI CCCAGC 2 cut(s) 327, 591
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 2 cut(s) 6, 456
SalI GTCGAC 2 cut(s) 572, 677
SaqAI TTAA 1 cut(s) 818
Sau3AI GATC 2 cut(s) 188, 303
SchI GAGTC 5 cut(s) 508, 566, 572, 674, 733
ScrFI CCNGG 2 cut(s) 525, 729
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 1 cut(s) 765
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 199
SgrAI CRCCGGYG 1 cut(s) 746
SgrDI CGTCGACG 1 cut(s) 572
SlaI CTCGAG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 3 cut(s) 550, 562, 850
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 523, 727
TaaI ACNGT 3 cut(s) 382, 571, 676
TaiI ACGT 4 cut(s) 453, 603, 609, 621
TaqI TCGA 5 cut(s) 200, 294, 573, 581, 678
TasI AATT 3 cut(s) 550, 562, 850
TfiI GAWTC 2 cut(s) 195, 352
Tru1I TTAA 1 cut(s) 818
Tru9I TTAA 1 cut(s) 818
TscAI CASTG 2 cut(s) 243, 375
TseFI GTSAC 3 cut(s) 159, 541, 607
TseI GCWGC 5 cut(s) 184, 274, 700, 703, 733
Tsp45I GTSAC 3 cut(s) 159, 541, 607
TspDTI ATGAA 2 cut(s) 10, 523
TspRI CASTG 2 cut(s) 243, 375
VspI ATTAAT 1 cut(s) 818
XhoI CTCGAG 1 cut(s) 199
XmiI GTMKAC 3 cut(s) 573, 603, 678
XspI CTAG 1 cut(s) 639
ZraI GACGTC 1 cut(s) 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.