AT4G29980

FAS1 domain-containing protein SELMODRAFT_448915-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005034
Physical Location & Seq
Reverse (-)
14664941 .. 14665583
643 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29980.1

Sequence Viewer

Length: 510 bp
ATGGCAACCACCAAGCACCTCCTCCTCTTCCTCCTCATCATCGCTATCATCACCATTACATCTTCCACTTCACTTCCATTTCTCACGACGGAGCAAAACCAAATCGCAACCAAAATCATAGACGCAATGGTCTCAAGTGGCTCTTTCGAAGATTGGAGCGGAGCGTTCCTCAACAACAACGACGAATTAAACGGTCCAGTCCTAACTTCAACTCTCTTCCTCCCCAAAACATCCGTGGAAGGAATCAACGCCACGTCACCACTAGTTGCTTCTTACCATATTGTTCCACAATGGCTTGACTTCTCCGTCATAAGTCTCATGATGCCTTTCTCTCGCATCCCTACACTCCTCTCTGGACACTCTATAGTCGTTACCAACAATTCAGCTTCTGGTTTTACTCTTGATGGTGTTCTCATCTCTGAGCCAGATTTATTCGTCTCTCCTACTATAGTTATCCATCGAATGGCTTTTCCATTTAACTTCTCTCGTTACGGTGGTGGCGATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

169

Amino Acids

18.31

Weight (kDa)

4.88

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 128, 305
AccB7I CCANNNNNTGG 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 159
AciI CCGC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 1 cut(s) 210
AhlI ACTAGT 1 cut(s) 262
AjiI CACGTC 1 cut(s) 255
AluBI AGCT 1 cut(s) 386
AluI AGCT 1 cut(s) 386
Alw26I GTCTC 3 cut(s) 136, 320, 442
AlwNI CAGNNNCTG 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 194
AsuHPI GGTGA 2 cut(s) 43, 249
AsuII TTCGAA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 194
BccI CCATC 2 cut(s) 398, 465
BcoDI GTCTC 3 cut(s) 136, 320, 442
BcuI ACTAGT 1 cut(s) 262
BfaI CTAG 1 cut(s) 263
BfmI CTRYAG 2 cut(s) 363, 447
Bme18I GGWCC 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 194
BmsI GCATC 2 cut(s) 312, 345
BplI GAGNNNNNCTC 2 cut(s) 153, 185
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 1 cut(s) 234
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 197
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 230, 336
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 197
BseRI GAGGAG 4 cut(s) 11, 14, 23, 338
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 3 cut(s) 136, 320, 442
BsmBI CGTCTC 1 cut(s) 442
Bso31I GGTCTC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 147
BspACI CCGC 1 cut(s) 159
BspCNI CTCAG 1 cut(s) 412
BspHI TCATGA 1 cut(s) 318
BspT104I TTCGAA 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 194, 494
Bst6I CTCTTC 2 cut(s) 32, 221
BstBI TTCGAA 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 420
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 230, 336
BstMAI GTCTC 3 cut(s) 136, 320, 442
BstSFI CTRYAG 2 cut(s) 363, 447
BtgI CCRYGG 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 255
BtsCI GGATG 2 cut(s) 230, 336
CaiI CAGNNNCTG 1 cut(s) 389
CciI TCATGA 1 cut(s) 318
Cfr13I GGNCC 1 cut(s) 194
CseI GACGC 1 cut(s) 131
CviAII CATG 1 cut(s) 319
CviJI RGCY 5 cut(s) 141, 295, 386, 424, 467
CviKI_1 RGCY 5 cut(s) 141, 295, 386, 424, 467
DdeI CTNAG 1 cut(s) 420
DrdI GACNNNNNNGTC 2 cut(s) 128, 305
DseDI GACNNNNNNGTC 2 cut(s) 128, 305
Eam1104I CTCTTC 2 cut(s) 32, 221
EarI CTCTTC 2 cut(s) 32, 221
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 194
Esp3I CGTCTC 1 cut(s) 442
FaeI CATG 1 cut(s) 322
FaiI YATR 8 cut(s) 119, 279, 311, 320, 365, 449, 506, 508
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 1 cut(s) 318
FokI GGATG 2 cut(s) 217, 323
FspBI CTAG 1 cut(s) 263
HgaI GACGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 322
HinfI GANTC 1 cut(s) 243
HphI GGTGA 2 cut(s) 43, 249
Hpy188I TCNGA 1 cut(s) 421
Hpy188III TCNNGA 4 cut(s) 85, 319, 354, 401
Hpy99I CGWCG 2 cut(s) 91, 185
HpyAV CCTTC 1 cut(s) 233
HpyCH4III ACNGT 2 cut(s) 194, 494
HpyCH4IV ACGT 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 1 cut(s) 322
LmnI GCTCC 3 cut(s) 91, 156, 161
LpnPI CCDG 4 cut(s) 210, 339, 375, 438
LweI GCATC 2 cut(s) 312, 345
MaeI CTAG 1 cut(s) 263
MaeII ACGT 1 cut(s) 254
MaeIII GTNAC 3 cut(s) 255, 370, 488
MbiI CCGCTC 1 cut(s) 159
MboII GAAGA 4 cut(s) 19, 54, 161, 208
MluCI AATT 2 cut(s) 185, 379
MnlI CCTC 8 cut(s) 29, 32, 35, 41, 44, 179, 230, 359
MseI TTAA 2 cut(s) 188, 477
NlaIII CATG 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 255
NspV TTCGAA 1 cut(s) 147
PagI TCATGA 1 cut(s) 318
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PfeI GAWTC 1 cut(s) 243
PflMI CCANNNNNTGG 1 cut(s) 463
PspPI GGNCC 1 cut(s) 194
PstNI CAGNNNCTG 1 cut(s) 389
SaqAI TTAA 2 cut(s) 188, 477
Sau96I GGNCC 1 cut(s) 194
SetI ASST 3 cut(s) 21, 257, 388
SfaNI GCATC 2 cut(s) 312, 345
SfcI CTRYAG 2 cut(s) 363, 447
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 133
SmoI CTYRAG 1 cut(s) 133
SpeI ACTAGT 1 cut(s) 262
Sse9I AATT 2 cut(s) 185, 379
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 263
TaaI ACNGT 2 cut(s) 194, 494
TaiI ACGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 147, 460
TasI AATT 2 cut(s) 185, 379
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 2 cut(s) 188, 477
Tru9I TTAA 2 cut(s) 188, 477
TseFI GTSAC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 255
TspGWI ACGGA 3 cut(s) 104, 223, 295
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XspI CTAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.